BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZH09FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1584 1457 0.0
>3x_Contig1584
Length = 9710
Score = 1457 bits (735), Expect = 0.0
Identities = 825/846 (97%), Gaps = 7/846 (0%)
Strand = Plus / Minus
Query: 88 aaaagaagggttgggaaatttttttcttgtccgacaggctgagtaaatttgtaactgact 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 aaaagaagggttgggaaatttttttcttgtccgacaggctgagtaaatttgtaactgact 1262
Query: 148 ccattcgtatttagtttaatgtatttatttattgtaaaacgttggcctgttatttgtaca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ccattcgtatttagtttaatgtatttatttattgtaaaacgttggcctgttatttgtaca 1202
Query: 208 ggcatgtcatatatttatctgctagagtaacaatgttattttctcaatgtggtttgtaga 267
||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 ggcatgtcagagacgtatctgctagagtaacaatgttattttctcaatgtggtttgtaga 1142
Query: 268 tatttaatgtacaaaagggtttatctagggggtgaggaaggtttgaaattttattgttta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tatttaatgtacaaaagggtttatctagggggtgaggaaggtttgaaattttattgttta 1082
Query: 328 agcacaggcgtctccttccttttcaggttctgggtccactgttatcattgtgtcaattct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 agcacaggcgtctccttccttttcaggttctgggtccactgttatcattgtgtcaattct 1022
Query: 388 tagaatggcgatacatgcttccaaagccgatttcaaggatttaactttactgatggttgg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tagaatggcgatacatgcttccaaagccgatttcaaggatttaactttactgatggttgg 962
Query: 448 ctcaaggacaccggcatgaacttcatctacgatcttacccttgattagatctagtccgta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ctcaaggacaccggcatgaacttcatctacgatcttacccttgattagatctagtccgta 902
Query: 508 gttacggtactttctcctctttatgtcatctggtttcgcttgctggctagccgcatggta 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gttacggtactttctcctctttatgtcatctggtttcgcttgctggctagccgcatggta 842
Query: 568 cgatcttaacttggcgattaattcactggagtccttggcagcgttgacggctaaggtctt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cgatcttaacttggcgattaattcactggagtccttggcagcgttgacggctaaggtctt 782
Query: 628 ggggatcactagtaatgcgttggcaaattctgcaatagctagttgttctcttgatccaac 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ggggatcactagtaatgcgttggcaaattctgcaatagctagttgttctcttgatccaac 722
Query: 688 ggtagtagcaaagttatctaggtagatgttcaatgcagtttccacacatccaccacctgg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggtagtagcaaagttatctaggtagatgttcaatgcagtttccacacatccaccacctgg 662
Query: 748 tacgacattcccactttcaagtgtttcnttttactacgcatagcgagtcatgtaaggaac 807
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 661 tacgacattcccactttcaagtg-ttctctttactacgcatagcgagtcatgtaaggaac 603
Query: 808 gttccatttcttcttacgagtaatcgtttagaccacgtaatactatggaagacca-gaat 866
|||||||||| ||| ||||||||||||| ||||||||||||| ||||||||| | ||||
Sbjct: 602 gttccatttcgtctaacgagtaatcgttaggaccacgtaatacgatggaagacgaggaat 543
Query: 867 gttttttgagtgcctttgtatta-gatacactcatcatcttgaaaacttgg-ttggacca 924
| ||||||||||||| || |||| ||||||||||||||| ||||||||||| ||| ||||
Sbjct: 542 g-tttttgagtgcctctg-attaggatacactcatcatc-tgaaaacttggtttgaacca 486
Query: 925 cttctt 930
||||||
Sbjct: 485 cttctt 480
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6141
Number of Sequences: 1807
Number of extensions: 6141
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)