BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZH09RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1763 1316 0.0
>3x_Contig1763
Length = 22654
Score = 1316 bits (664), Expect = 0.0
Identities = 759/787 (96%), Gaps = 3/787 (0%)
Strand = Plus / Plus
Query: 47 cgccgatttgaagaaatataagttttattattgggtttgtatgcctactttccagtctga 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 cgccgatttgaagaaatataagttttattattgggtttgtatgcctactttccagtctga 988
Query: 107 ggggtcatcgtacgaaataatctcaacaaaatcaatcgaagatggtgtaaagaaggatat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 ggggtcatcgtacgaaataatctcaacaaaatcaatcgaagatggtgtaaagaaggatat 1048
Query: 167 atgggagcagaacagctttatctcctgtgttgtggatggaaagattcaggaagcatcacc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 atgggagcagaacagctttatctcctgtgttgtggatggaaagattcaggaagcatcacc 1108
Query: 227 tcagtatctcaaagtatgtcagaaagtcatcttcaaggacttcagtcggctgaagggcat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 tcagtatctcaaagtatgtcagaaagtcatcttcaaggacttcagtcggctgaagggcat 1168
Query: 287 tcctgccgcagttactaagaactttctaacggtttggagtcaaatatccacaaggaatac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 tcctgccgcagttactaagaactttctaacggtttggagtcaaatatccacaaggaatac 1228
Query: 347 gtacaccatatgtttccttcgtgatgataattccagcttcgcggcagagatcagagttac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 gtacaccatatgtttccttcgtgatgataattccagcttcgcggcagagatcagagttac 1288
Query: 407 cgggagcaatacaggatgtcttaaggtcagcggttgggagaaaaatggtcttggaaaatt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 cgggagcaatacaggatgtcttaaggtcagcggttgggagaaaaatggtcttggaaaatt 1348
Query: 467 agctccgaaatcggctgacttaagctcattgatggatcccgtgaagatagcagaacaatc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 agctccgaaatcggctgacttaagctcattgatggatcccgtgaagatagcagaacaatc 1408
Query: 527 cattgatctcaatctcaagctaatgaaatggangattgctcctgacattgatctagaaag 586
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1409 cattgatctcaatctcaagctaatgaaatggaggattgctcctgacattgatctagaaag 1468
Query: 587 aat-aagaacattaaagcattgatcttggggtcaggtacccctagttgctacgtggctag 645
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1469 aataaagaacattaaagcattgatcttggggtcaggtaccctaggttgctacgtggctag 1528
Query: 646 agctttattagcttggagtactcgtcatgttactttttgtcgacaacagcactgtctctt 705
|||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 1529 agctttattagcttggggtactcgtcatgtaac-ttttgtcgacaacagcactgtctctt 1587
Query: 706 tctcttatcccgtaaagcaaacattattcaactttgaaaattgggggcgacccaaggccg 765
||||| |||| |||| |||| ||||||||||||||||| |||| |||||||| |||||||
Sbjct: 1588 tctctaatccggtaaggcaaccattattcaactttgaagattgtgggcgaccaaaggccg 1647
Query: 766 aaactggcactgactctttgaaaaaaaaattttcttctggccgtttctgccggttttcat 825
|| ||| || ||||||| |||| || | |||| ||||| | ||||||||| |||| |||
Sbjct: 1648 aagctgccagtgactctctgaagaagatatttccttct-gtcgtttctgcaggttatcaa 1706
Query: 826 ttggaaa 832
|||||||
Sbjct: 1707 ttggaaa 1713
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7404
Number of Sequences: 1807
Number of extensions: 7404
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)