BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZH10RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 936 0.0
>3x_Contig1794
Length = 36744
Score = 936 bits (472), Expect = 0.0
Identities = 558/584 (95%), Gaps = 2/584 (0%)
Strand = Plus / Minus
Query: 52 acacatttgttactgttttcgtaaattgttttgattaacagatcactaccagtactttgt 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22635 acacatttgttactgttttcgtaaattgttttgattaacagatcactaccagtactttgt 22576
Query: 112 gatgaggagggaatatagtcctgatgggaaattgctgtctcaattggattctttggatca 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22575 gatgaggagggaatatagtcctgatgggaaattgctgtctcaattggattctttggatca 22516
Query: 172 tatacaacatatgcttgaatttgagagtaatcttcgaacaagaactggaaatctctgaca 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22515 tatacaacatatgcttgaatttgagagtaatcttcgaacaagaactggaaatctctgaca 22456
Query: 232 accaacttatttgtattccttctttcaactatgtgatcctgagattcccagatgtatttt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22455 accaacttatttgtattccttctttcaactatgtgatcctgagattcccagatgtatttt 22396
Query: 292 actttgcttggtttaacagtatcagcctgaactgtcttagttaaccaccaagtactttgc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22395 actttgcttggtttaacagtatcagcctgaactgtcttagttaaccaccaagtactttgc 22336
Query: 352 tttgagaactctaattctggaatagtacctggttcaaatttcgccgtagttgtccgtctt 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22335 tttgagaactctaattctggaatagtacctggttcaaatttcgccgtagttgtccgtctt 22276
Query: 412 aatggctggaaactggccggaatttgtggagcagcagatgaaagagtggctggtgattag 471
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 22275 aatggctggaaactggccggaatttgtggagcagcagatgaaggagtggctggtgatgag 22216
Query: 472 tttgctgcacctggaatagtctgaattgaaagtcttcgttgcggtgcatttaaatgaggc 531
|||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct: 22215 tttgctgcacctggaatagtctgaattgaaggtcttcgttgcggtgcattagaaggaggc 22156
Query: 532 cattgtggagggcccccactgttttgtcctgga-gaacaagggccacaacgggctgtttt 590
|| |||||||||| |||||| || || ||||| || || |||| || |||||||||||
Sbjct: 22155 aatggtggagggccgccactgcttggtactggaggagcaggggcagcagcgggctgtttt 22096
Query: 591 tttggcaatttttgttcaaggtttttcggttttaacccttaaaa 634
|||||| ||| || || || |||||||||||||| |||||||
Sbjct: 22095 gttggcagtttctgctc-agtgttttcggttttaacgcttaaaa 22053
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7571
Number of Sequences: 1807
Number of extensions: 7571
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)