BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZH11FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1572 1429 0.0
>3x_Contig1572
Length = 12810
Score = 1429 bits (721), Expect = 0.0
Identities = 765/775 (98%), Gaps = 4/775 (0%)
Strand = Plus / Plus
Query: 82 tttctcctttcgctacttcttcagatttaacaccgacagggtcgtcgaatagtgacacgt 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12036 tttctcctttcgctacttcttcagatttaacaccgacagggtcgtcgaatagtgacacgt 12095
Query: 142 caagtgcaatgttgtctaccagtgggacaacttcaagtcattcaaataatgaaaattcaa 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12096 caagtgcaatgttgtctaccagtgggacaacttcaagtcattcaaataatgaaaattcaa 12155
Query: 202 tatctttgaagtattatggtgattctcagcattctatagactcacaatccgatcatagca 261
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12156 tatctttgaagtatgagggtgattctcagcattctatagactcacaatccgatcatagca 12215
Query: 262 atggaataaaatccatacagccaaatgccatgttggggaaacaatcttcggtaagtgatc 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12216 atggaataaaatccatacagccaaatgccatgttggggaaacaatcttcggtaagtgatc 12275
Query: 322 cattaaaccagttatccgaagatatttcattggacgtgacaggaaatattcaaggacatg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12276 cattaaaccagttatccgaagatatttcattggacgtgacaggaaatattcaaggacatg 12335
Query: 382 atgctggtgttaaaccggtattatcggctgaaacaagttttaatacgtgttatgatgaag 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12336 atgctggtgttaaaccggtattatcggctgaaacaagttttaatacgtgttatgatgaag 12395
Query: 442 gatacgctttactaccagatttcttcgcagtaacatcagaagccaaagtggaactaccta 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12396 gatacgctttactaccagatttcttcgcagtaacatcagaagccaaagtggaactaccta 12455
Query: 502 ttgaatttccagacttgcaaaagtttttaccggtaaatcagtcagttgatcctgatattg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12456 ttgaatttccagacttgcaaaagtttttaccggtaaatcagtcagttgatcctgatattg 12515
Query: 562 cttccagtgttaactccctataccaagtttattgtaatactttgtttgaaaatatacggt 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12516 cttccagtgttaactccctataccaagtttattgtaatactttgtttgaaaatatacggt 12575
Query: 622 tcatgaagtttgatgatcttccattaacattgcaatcattttcatcgagttcaatatcat 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12576 tcatgaagtttgatgatcttccattaacattgcaatcattttcatcgagttcaatatcat 12635
Query: 682 caaaaatgtacaacttgtttatttctgaagaattgtacagatgggttcatcaatcagacc 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12636 caaaaatgtacaacttgtttatttctgaagaattgtacagatgggttcatcaatcagacc 12695
Query: 742 tacttactcacaaagctctgaccaagatgctttcgagtttgattgttgacttc-acgaaa 800
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 12696 tacttactcacaaggctctgaccaagatgctttcgagtttgattgttgacttcaacgaaa 12755
Query: 801 tt-cagnagttgtgttcaacana-tgtcagacttttc-aatgagtatatgaagat 852
|| ||| ||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct: 12756 ttccagaggttgtgttcaacaaattgtcagacttttcaaatgagtatatgaagat 12810
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6976
Number of Sequences: 1807
Number of extensions: 6976
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)