BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC9ZH11RM1.SCF screened BAC_end (878 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig975 769 0.0 >3x_Contig975 Length = 5628 Score = 769 bits (388), Expect = 0.0 Identities = 522/552 (94%), Gaps = 13/552 (2%) Strand = Plus / Plus Query: 161 aaagaaacacagaagctaaatgaaatggaaagagtttcgctgccattactagacactgca 220 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 150 aaagaatcacagaagctaaatgaaatgtaaagagtttcgctgccattactagacactgca 209 Query: 221 gcgtccaggtgcctacactaatgtctctcggcaaaagaagagaagcagtacttgaaatcg 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 210 gcgtccaggtgcctacactaatgtctctcggcaaaagaagagaagcagtacttgaaatcg 269 Query: 281 ggattataccaatgaagcaacggaagtaaactacaaaaaaaaatactatggttgcttaca 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 270 ggattataccaatgaagcaacggaagtaaactacaaaaaaaaatactatggttgcttaca 329 Query: 341 tggaatgcagagtgttaatgctttctatttttttggccctatacttactcttaaatcaaa 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 330 tggaatgcagagtgttaatgctttctatttttttggccctatacttactcttaaatcaaa 389 Query: 401 ctgcaaaatgctntggctgtactacaaattacatttgaatagtctcagtggtatgcgaca 460 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 390 ctgcaaaatgctttggctgtactacaaattacatttgaatagtctcagtggtatgcgaca 449 Query: 461 gttttgaacgaaaggagtcgncaacttcttacaat-acagcctta-ttttgcaaatctga 518 |||||||||||| ||||||| |||||||||||||| ||||||||| |||||||||||||| Sbjct: 450 gttttgaacgaagggagtcgccaacttcttacaataacagccttatttttgcaaatctga 509 Query: 519 ctgatcatcattagggttttc-aagttggtgagggtatattgggataac-aaaagttgaa 576 ||||||||||||||||||||| |||||| ||||||||||| |||||||| |||||| ||| Sbjct: 510 ctgatcatcattagggttttcaaagttgttgagggtatatagggataacaaaaagtagaa 569 Query: 577 agcatactt-ggaagaatct-tgaaagacgt-gggatgaacca-gaatggaatatt--ga 630 ||||||||| | |||| ||| |||||||||| || ||||| || |||||||||| | || Sbjct: 570 agcatacttcgaaagattctctgaaagacgtcggaatgaagcaggaatggaataatagga 629 Query: 631 attcaaaggcaccttcgg-ctttcta-tnacttggactattcgctgctc-gatatttggt 687 |||||||||||||||||| || |||| | ||||| |||||||||||||| |||||||| | Sbjct: 630 attcaaaggcaccttcggcctctctactcacttgtactattcgctgctcggatatttgtt 689 Query: 688 caactttcgaaa 699 |||||||||||| Sbjct: 690 caactttcgaaa 701 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7517 Number of Sequences: 1807 Number of extensions: 7517 Number of successful extensions: 58 Number of sequences better than 1.0e-20: 1 length of query: 878 length of database: 10,358,551 effective HSP length: 16 effective length of query: 862 effective length of database: 10,329,639 effective search space: 8904148818 effective search space used: 8904148818 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)