BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC9ZH11RM1.SCF screened BAC_end
         (878 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig975                                                          769   0.0  

>3x_Contig975 
          Length = 5628

 Score =  769 bits (388), Expect = 0.0
 Identities = 522/552 (94%), Gaps = 13/552 (2%)
 Strand = Plus / Plus

                                                                       
Query: 161 aaagaaacacagaagctaaatgaaatggaaagagtttcgctgccattactagacactgca 220
           |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 150 aaagaatcacagaagctaaatgaaatgtaaagagtttcgctgccattactagacactgca 209

                                                                       
Query: 221 gcgtccaggtgcctacactaatgtctctcggcaaaagaagagaagcagtacttgaaatcg 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gcgtccaggtgcctacactaatgtctctcggcaaaagaagagaagcagtacttgaaatcg 269

                                                                       
Query: 281 ggattataccaatgaagcaacggaagtaaactacaaaaaaaaatactatggttgcttaca 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ggattataccaatgaagcaacggaagtaaactacaaaaaaaaatactatggttgcttaca 329

                                                                       
Query: 341 tggaatgcagagtgttaatgctttctatttttttggccctatacttactcttaaatcaaa 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tggaatgcagagtgttaatgctttctatttttttggccctatacttactcttaaatcaaa 389

                                                                       
Query: 401 ctgcaaaatgctntggctgtactacaaattacatttgaatagtctcagtggtatgcgaca 460
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctgcaaaatgctttggctgtactacaaattacatttgaatagtctcagtggtatgcgaca 449

                                                                       
Query: 461 gttttgaacgaaaggagtcgncaacttcttacaat-acagcctta-ttttgcaaatctga 518
           |||||||||||| ||||||| |||||||||||||| ||||||||| ||||||||||||||
Sbjct: 450 gttttgaacgaagggagtcgccaacttcttacaataacagccttatttttgcaaatctga 509

                                                                       
Query: 519 ctgatcatcattagggttttc-aagttggtgagggtatattgggataac-aaaagttgaa 576
           ||||||||||||||||||||| |||||| ||||||||||| |||||||| |||||| |||
Sbjct: 510 ctgatcatcattagggttttcaaagttgttgagggtatatagggataacaaaaagtagaa 569

                                                                       
Query: 577 agcatactt-ggaagaatct-tgaaagacgt-gggatgaacca-gaatggaatatt--ga 630
           ||||||||| | |||| ||| |||||||||| || ||||| || |||||||||| |  ||
Sbjct: 570 agcatacttcgaaagattctctgaaagacgtcggaatgaagcaggaatggaataatagga 629

                                                                       
Query: 631 attcaaaggcaccttcgg-ctttcta-tnacttggactattcgctgctc-gatatttggt 687
           |||||||||||||||||| || |||| | ||||| |||||||||||||| |||||||| |
Sbjct: 630 attcaaaggcaccttcggcctctctactcacttgtactattcgctgctcggatatttgtt 689

                       
Query: 688 caactttcgaaa 699
           ||||||||||||
Sbjct: 690 caactttcgaaa 701


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7517
Number of Sequences: 1807
Number of extensions: 7517
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)