BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZH12FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1572 1384 0.0
>3x_Contig1572
Length = 12810
Score = 1384 bits (698), Expect = 0.0
Identities = 758/776 (97%), Gaps = 2/776 (0%)
Strand = Plus / Plus
Query: 89 tttctcctttcgctacttcttcagatttaacaccgacagggtcgtcgaatagtgacacgt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12036 tttctcctttcgctacttcttcagatttaacaccgacagggtcgtcgaatagtgacacgt 12095
Query: 149 caagtgcaatgttgtctaccagtgggacaacttcaagtcattcaaataatgaaaattcaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12096 caagtgcaatgttgtctaccagtgggacaacttcaagtcattcaaataatgaaaattcaa 12155
Query: 209 tatctttgatttattagggtgattctcagcattctatagactcacaatccgatcatagca 268
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12156 tatctttgaagtatgagggtgattctcagcattctatagactcacaatccgatcatagca 12215
Query: 269 atggaataaaatccatacagccaaatgccatgttggggaaacaatcttcggtaagtgatc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12216 atggaataaaatccatacagccaaatgccatgttggggaaacaatcttcggtaagtgatc 12275
Query: 329 cattaaaccagttatccgaagatatttcattggacgtgacaggaaatattcaaggacatg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12276 cattaaaccagttatccgaagatatttcattggacgtgacaggaaatattcaaggacatg 12335
Query: 389 atgctggtgttaaaccggtattatcggctgaaacaagttttaatacgtgttatgatgaag 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12336 atgctggtgttaaaccggtattatcggctgaaacaagttttaatacgtgttatgatgaag 12395
Query: 449 gatacgctttactaccagatttcttcgcagtaacatcagaagccaaagtggaactaccta 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12396 gatacgctttactaccagatttcttcgcagtaacatcagaagccaaagtggaactaccta 12455
Query: 509 ttgaatttccagacttgcaaaagtttttaccggtaaatcagtcagttgatcctgatattg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12456 ttgaatttccagacttgcaaaagtttttaccggtaaatcagtcagttgatcctgatattg 12515
Query: 569 ctttcagtgttaactccctataccaagtttattgaaatactttgtttgaaaatatacggn 628
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 12516 cttccagtgttaactccctataccaagtttattgtaatactttgtttgaaaatatacggt 12575
Query: 629 tcatgaagtttgatgatcttccattaacattgcaatcattttcatcgagttcaatatcat 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12576 tcatgaagtttgatgatcttccattaacattgcaatcattttcatcgagttcaatatcat 12635
Query: 689 caaaaatgtacaacttgtttatttctgaagaattgtacagatggggttcatcaatcagac 748
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 12636 caaaaatgtacaacttgtttatttctgaagaattgtacagat-gggttcatcaatcagac 12694
Query: 749 ctacttactcacaaggctctgaccaaaatgcttttcgagtttgattgttgacttcaacga 808
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 12695 ctacttactcacaaggctctgaccaagatgc-tttcgagtttgattgttgacttcaacga 12753
Query: 809 aaatccatagtttgtgcttcacaaattgncagactttttcaatgagtatatgaaga 864
|| |||| || ||||| | |||||||| ||||||||| ||||||||||||||||
Sbjct: 12754 aattccagaggttgtgttcaacaaattgtcagacttttcaaatgagtatatgaaga 12809
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7084
Number of Sequences: 1807
Number of extensions: 7084
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)