BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC9ZH12RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1664 922 0.0
>3x_Contig1664
Length = 15696
Score = 922 bits (465), Expect = 0.0
Identities = 583/616 (94%), Gaps = 6/616 (0%)
Strand = Plus / Minus
Query: 47 atccttcaattccttgtgtctagcgaacaattcagcttcagatttctgtaacttcttttc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8235 atccttcaattccttgtgtctagcgaacaattcagcttcagatttctgtaacttcttttc 8176
Query: 107 cttttcttcaactttctgttggaatactgccttcatttcagcttccaatttagctagttt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8175 cttttcttcaactttctgttggaatactgccttcatttcagcttccaatttagctagttt 8116
Query: 167 gacttcgtgtagttgtttttcctccttttgtctagtttctggatcgaaattcttgaagac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8115 gacttcgtgtagttgtttttcctccttttgtctagtttctggatcgaaattcttgaagac 8056
Query: 227 actgttgtcttgtttgatacccaatcctaatagcttttcagatctatatttttcgtataa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8055 actgttgtcttgtttgatacccaatcctaatagcttttcagatctatatttttcgtataa 7996
Query: 287 tactttgttagtcctttcgcgtaattcttccaagtattgtctaattaatagatctcttaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7995 tactttgttagtcctttcgcgtaattcttccaagtattgtctaattaatagatctcttaa 7936
Query: 347 atatacaaaatcagaatgttttgtgttgtcaacttcgatgacaccccatgggtaagccct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7935 atatacaaaatcagaatgttttgtgttgtcaacttcgatgacaccccatgggtaagccct 7876
Query: 407 acctctaacttttctaccgtcttctgtagagacttgttcataggaaccgacaatggcaaa 466
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 7875 acctctaacttttctaccgtcttctgtagtgacttgttcagtggaaccgacaatggcaaa 7816
Query: 467 aggaatcttttcaaagattgtttcaattgaagtttcatctcccagaatatatttttgagg 526
|||||||||||||||||| ||||| ||||||||||||||||||| ||| | | ||||||
Sbjct: 7815 aggaatcttttcaaagatgttttcagttgaagtttcatctcccagcatagaatattgagg 7756
Query: 527 aggttcaaacaactgccccctgggctcgtttccagttgtttccttgatgggggctttgaa 586
|||||||||||||| | | | |||| | ||| |||||||| |||||||| |||||||||
Sbjct: 7755 tggttcaaacaactg-cacgttggcttg-ttctagttgttt-cttgatggtggctttgaa 7699
Query: 587 agttacaatttcttcgccagttaaaaaggtccaattttggcggttacggggattcaagtt 646
||| |||||||||||| ||||||| | | || ||||||| | ||||||| |||||||
Sbjct: 7698 agtgacaatttcttcgtcagttaagatg--tcagatttggcgataacgggga-tcaagtt 7642
Query: 647 ccatttggaatgaacc 662
|||||||||||||||
Sbjct: 7641 acatttggaatgaacc 7626
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,487
Number of Sequences: 1807
Number of extensions: 14487
Number of successful extensions: 123
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)