BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0003 1882 2190 103 !not a gene!
         (103 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71218 hypothetical protein PH0004 - Pyrococcus horikoshii ...   168  2e-41
emb|CAB44711.1| (AJ242955) hypothetical protein (P4(21)n) [Mus m...    70  7e-12

>pir||A71218 hypothetical protein PH0004 - Pyrococcus horikoshii
           >gi|3256389|dbj|BAA29072.1| (AP000001) 103aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 103
           
 Score =  168 bits (420), Expect = 2e-41
 Identities = 87/103 (84%), Positives = 92/103 (88%)

Query: 1   MSEALASLLRPYSAFLALLIPSIVKGSVTTETVKAPIFFAISAMTGAAPVPVPPPRPHVT 60
           MSEA ASLLRPYSAFLALLIPSIV GSVTTETV+APIF AISA+TGAAPVPVPPPRP VT
Sbjct: 1   MSEAFASLLRPYSAFLALLIPSIVNGSVTTETVRAPIFLAISAITGAAPVPVPPPRPQVT 60

Query: 61  KTISAPSKASLSSLSLSLAASSPIFGSFPAPRPLVNSLPMRIF 103
           KT+SAPS+ASL SLSLS AASSPI GS PAP PLV SLP+ IF
Sbjct: 61  KTMSAPSRASLISLSLSFAASSPILGSLPAPSPLVISLPISIF 103


>emb|CAB44711.1| (AJ242955) hypothetical protein (P4(21)n) [Mus musculus]
           >gi|5103287|dbj|BAA78905.1| (AB028868) The protein is
           similar with AMYH_YEAST GLUCOAMYLASE S1/S2 PRECURSOR
           (Acc#P08640). [Mus musculus]
           Length = 400
           
 Score = 69.9 bits (168), Expect = 7e-12
 Identities = 41/79 (51%), Positives = 47/79 (58%)

Query: 24  VKGSVTTETVKAPIFFAISAMTGAAPVPVPPPRPHVTKTISAPSKASLSSLSLSLAASSP 83
           + G VTT TVKAP   AI A TGAAP+PVPPP P V  T+   SKA   S + S AA  P
Sbjct: 207 LNGRVTTATVKAPCSLAIRATTGAAPLPVPPPMPAVITTMFGTSKAEAMSSADSSAAFVP 266

Query: 84  IFGSFPAPRPLVNSLPMRI 102
             G   AP+P VN  P+ I
Sbjct: 267 RSGFEGAPKPPVNFGPISI 285


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.131    0.369 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35041193
Number of Sequences: 2977
Number of extensions: 1385582
Number of successful extensions: 12150
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12147
Number of HSP's gapped (non-prelim): 2
length of query: 103
length of database: 189,106,746
effective HSP length: 56
effective length of query: 47
effective length of database: 155,591,474
effective search space: 7312799278
effective search space used: 7312799278
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 159 (66.3 bits)