BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0006 (PAB0006) DE:Hypothetical protein
(205 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75185 hypothetical protein PAB0006 - Pyrococcus abyssi (st... 432 e-120
pir||G71218 hypothetical protein PH0010 - Pyrococcus horikoshii ... 413 e-115
sp|Q58220|Y810_METJA HYPOTHETICAL PROTEIN MJ0810 >gi|2128521|pir... 220 7e-57
pir||D69214 conserved hypothetical protein MTH857 - Methanobacte... 211 6e-54
gi|11499551 conserved hypothetical protein [Archaeoglobus fulgid... 202 3e-51
pir||E70425 conserved hypothetical protein aq_1444 - Aquifex aeo... 197 1e-49
emb|CAC11381.1| (AL445063) conserved hypothetical protein [Therm... 168 4e-41
pir||A72705 hypothetical protein APE1056 - Aeropyrum pernix (str... 168 7e-41
gb|AAK40539.1| Conserved hypothetical protein [Sulfolobus solfat... 167 1e-40
pir||B72239 conserved hypothetical protein - Thermotoga maritima... 117 1e-25
gb|AAG20599.1| (AE005130) Vng2543c [Halobacterium sp. NRC-1] 77 2e-13
>pir||F75185 hypothetical protein PAB0006 - Pyrococcus abyssi (strain Orsay)
>gi|5457442|emb|CAB48933.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 205
Score = 432 bits (1100), Expect = e-120
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MAKIKDEWGEFLVRLARRAIEEYLKTGKEIEPPKDTPKELWEKMGVFVTLNRHNVPPQTA 60
MAKIKDEWGEFLVRLARRAIEEYLKTGKEIEPPKDTPKELWEKMGVFVTLNRHNVPPQTA
Sbjct: 1 MAKIKDEWGEFLVRLARRAIEEYLKTGKEIEPPKDTPKELWEKMGVFVTLNRHNVPPQTA 60
Query: 61 LRGCIGFPLPIYPLVKATIKAAIYSAVDDPRFPPVKLEEMDNIIVEVSVLTPPELIEGPP 120
LRGCIGFPLPIYPLVKATIKAAIYSAVDDPRFPPVKLEEMDNIIVEVSVLTPPELIEGPP
Sbjct: 61 LRGCIGFPLPIYPLVKATIKAAIYSAVDDPRFPPVKLEEMDNIIVEVSVLTPPELIEGPP 120
Query: 121 EERPKKIKVGRDGLIVEKGIYSGLLLPQVPIEWGWDEEEFLAETCWKAGLPPDCWLDEDT 180
EERPKKIKVGRDGLIVEKGIYSGLLLPQVPIEWGWDEEEFLAETCWKAGLPPDCWLDEDT
Sbjct: 121 EERPKKIKVGRDGLIVEKGIYSGLLLPQVPIEWGWDEEEFLAETCWKAGLPPDCWLDEDT 180
Query: 181 KVYRFTAEIFEEEYPRGPVRRKSLV 205
KVYRFTAEIFEEEYPRGPVRRKSLV
Sbjct: 181 KVYRFTAEIFEEEYPRGPVRRKSLV 205
>pir||G71218 hypothetical protein PH0010 - Pyrococcus horikoshii
>gi|3256395|dbj|BAA29078.1| (AP000001) 206aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 206
Score = 413 bits (1051), Expect = e-115
Identities = 191/203 (94%), Positives = 200/203 (98%)
Query: 3 KIKDEWGEFLVRLARRAIEEYLKTGKEIEPPKDTPKELWEKMGVFVTLNRHNVPPQTALR 62
KIKDEWGEFLVRLARRAIEEYLKTGKEIEPPKDTP ELWEKMGVFVTLNR+NVPPQTALR
Sbjct: 4 KIKDEWGEFLVRLARRAIEEYLKTGKEIEPPKDTPPELWEKMGVFVTLNRYNVPPQTALR 63
Query: 63 GCIGFPLPIYPLVKATIKAAIYSAVDDPRFPPVKLEEMDNIIVEVSVLTPPELIEGPPEE 122
GCIGFP PIYPLV+ATIKAAIYSAVDDPRFPPVKLEEMDN++VEVSVLTPPELIEGPPEE
Sbjct: 64 GCIGFPTPIYPLVEATIKAAIYSAVDDPRFPPVKLEEMDNLVVEVSVLTPPELIEGPPEE 123
Query: 123 RPKKIKVGRDGLIVEKGIYSGLLLPQVPIEWGWDEEEFLAETCWKAGLPPDCWLDEDTKV 182
RP+KIKVGRDGLIVEKGIYSGLLLPQVP+EWGWDEEEFLAETCWKAGLPPDCWLDEDTKV
Sbjct: 124 RPRKIKVGRDGLIVEKGIYSGLLLPQVPVEWGWDEEEFLAETCWKAGLPPDCWLDEDTKV 183
Query: 183 YRFTAEIFEEEYPRGPVRRKSLV 205
Y+FTAEIFEEEYPRGP++RK LV
Sbjct: 184 YKFTAEIFEEEYPRGPIKRKPLV 206
>sp|Q58220|Y810_METJA HYPOTHETICAL PROTEIN MJ0810 >gi|2128521|pir||B64401 hypothetical
protein MJ0810 - Methanococcus jannaschii
>gi|1592310|gb|AAB98809.1| (U67525) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 225
Score = 220 bits (556), Expect = 7e-57
Identities = 118/200 (59%), Positives = 141/200 (70%), Gaps = 6/200 (3%)
Query: 7 EWGEFLVRLARRAIEEYLKTGKEIEPPKDTPKELWEKMGVFVTLNRHNVPPQTALRGCIG 66
E G F VR AR IE YL GK+I + P+ EK G F TL+ + P LRGCIG
Sbjct: 31 EEGTFAVRYARAVIENYL-AGKKIVI-ESYPEVFNEKRGCFCTLHTY---PDKELRGCIG 85
Query: 67 FPLPIYPLVKATIKAAIYSAVDDPRFPPVKLEEMDNIIVEVSVLTPPELIE-GPPEERPK 125
P PI PL++A +AAI +A DPRFPPV LEEMD+I+VEVS+LTPPELI+ P+E +
Sbjct: 86 IPEPIMPLIEALEEAAISAATKDPRFPPVTLEEMDSIVVEVSILTPPELIKVNHPKEYLE 145
Query: 126 KIKVGRDGLIVEKGIYSGLLLPQVPIEWGWDEEEFLAETCWKAGLPPDCWLDEDTKVYRF 185
KIK+GRDGLI+E G Y GLLLPQVP+E+GWD EE+LA C KAGLPPD WL E K+YRF
Sbjct: 146 KIKIGRDGLIIEYGFYRGLLLPQVPVEYGWDVEEYLAHLCLKAGLPPDMWLAEGVKIYRF 205
Query: 186 TAEIFEEEYPRGPVRRKSLV 205
A+IFEE PRG V K L+
Sbjct: 206 EAQIFEEVEPRGEVIEKKLL 225
>pir||D69214 conserved hypothetical protein MTH857 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621949|gb|AAB85355.1| (AE000862) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 192
Score = 211 bits (531), Expect = 6e-54
Identities = 108/193 (55%), Positives = 134/193 (68%), Gaps = 6/193 (3%)
Query: 2 AKIKDEWGEFLVRLARRAIEEYLKTGKEIEPPKDTPKELWEKMGVFVTLNRHNVPPQTAL 61
A + + G LV++AR AIEE+L+ K + P D P ++ GVFVTL + L
Sbjct: 4 APLSRDEGRTLVKIARMAIEEHLRGSKNLRLPDDLPDVFRQRRGVFVTLEKKG-----NL 58
Query: 62 RGCIGFPLPIYPLVKATIKAAIYSAVDDPRFPPVKLEEMDNIIVEVSVLTPPELIE-GPP 120
RGCIG+P P+ PL+ A I+AAI +A DPRFPPVK EE+D+I VEVSVLTPPE +E P
Sbjct: 59 RGCIGYPEPVKPLIDALIEAAISAATGDPRFPPVKPEELDDIDVEVSVLTPPEPLEVESP 118
Query: 121 EERPKKIKVGRDGLIVEKGIYSGLLLPQVPIEWGWDEEEFLAETCWKAGLPPDCWLDEDT 180
+ P I+VG DGLIVE+G GLLLPQV EWGWD EEFL TC KAGLPPDC+ D +T
Sbjct: 119 ADYPSLIRVGVDGLIVERGWARGLLLPQVATEWGWDAEEFLCNTCMKAGLPPDCFYDPET 178
Query: 181 KVYRFTAEIFEEE 193
+VYRF A+IF E+
Sbjct: 179 RVYRFQAQIFHED 191
>gi|11499551 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483190|pir||H69495 conserved hypothetical protein
AF1969 - Archaeoglobus fulgidus
>gi|2648572|gb|AAB89286.1| (AE000967) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 202
Score = 202 bits (508), Expect = 3e-51
Identities = 106/193 (54%), Positives = 135/193 (69%), Gaps = 8/193 (4%)
Query: 7 EWGEFLVRLARRAIEEYLKTGKEIEPPKDTPKELWEKMGVFVTLNRHNVPPQTALRGCIG 66
E GE VRLAR AIE YL+ K ++ D +K GVF TL +H LRGCIG
Sbjct: 8 EEGEKAVRLAREAIEHYLEERKILQKRLDGVFS--QKRGVFTTLTKHG-----NLRGCIG 60
Query: 67 FPLPIYPLVKATIKAAIYSAVDDPRFPPVKLEEMDNIIVEVSVLTPPELIEGPPEERPKK 126
FP P+ L +A I++AI +AVDDPRF PV+L EM+ IIVEV++LTPPE I+ P++ P
Sbjct: 61 FPYPVKRLDEAIIESAIAAAVDDPRFEPVRLSEMNEIIVEVTILTPPERIDAKPKDLPNH 120
Query: 127 IKVGRDGLIVEKGIYSGLLLPQVPIEWGWDEEEFLAETCWKAGLPPDCWLDEDTKVYRFT 186
+++GR GLIV+ G +SGLLLPQV +E+ D EEFL+ETC KAGLPPDCWL +VYRF
Sbjct: 121 VEIGRHGLIVKMGPFSGLLLPQVAVEYNMDAEEFLSETCMKAGLPPDCWL-TGAEVYRFE 179
Query: 187 AEIFEEEYPRGPV 199
+IF+E+ PRG V
Sbjct: 180 GQIFKEKEPRGEV 192
>pir||E70425 conserved hypothetical protein aq_1444 - Aquifex aeolicus
>gi|2983840|gb|AAC07395.1| (AE000740) hypothetical
protein [Aquifex aeolicus]
Length = 195
Score = 197 bits (495), Expect = 1e-49
Identities = 96/193 (49%), Positives = 134/193 (68%), Gaps = 4/193 (2%)
Query: 12 LVRLARRAIEEYLKTGKEIEPPKDTPKELWEKMGVFVTLNRHNVPPQTALRGCIGFPLPI 71
LV L R A+ + GKEI+ P+ ++ MGVF TL + P+ LRGCIG PLP+
Sbjct: 6 LVHLGRYAVWNAFE-GKEIKVPEALKEKYSRNMGVFTTLKTY---PEHNLRGCIGVPLPV 61
Query: 72 YPLVKATIKAAIYSAVDDPRFPPVKLEEMDNIIVEVSVLTPPELIEGPPEERPKKIKVGR 131
YPL AT+ +++ +A DPRF P+K EE D ++ E+++LTPPE ++ P EE P++I++G+
Sbjct: 62 YPLWYATVYSSLQAAFQDPRFYPLKKEEFDKVLWEITLLTPPEELKVPKEELPEQIEIGK 121
Query: 132 DGLIVEKGIYSGLLLPQVPIEWGWDEEEFLAETCWKAGLPPDCWLDEDTKVYRFTAEIFE 191
GLI+EKG GLLLPQVP+E+GW EFL TC KAGLP DCW D++TKVY F+ E+++
Sbjct: 122 HGLIIEKGEQKGLLLPQVPVEYGWSPVEFLEYTCLKAGLPKDCWKDKETKVYVFSGEVYQ 181
Query: 192 EEYPRGPVRRKSL 204
E+ P G V R +L
Sbjct: 182 EKEPFGEVERVNL 194
>emb|CAC11381.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 206
Score = 168 bits (422), Expect = 4e-41
Identities = 90/194 (46%), Positives = 120/194 (61%), Gaps = 5/194 (2%)
Query: 9 GEFLVRLARRAIEEYLKTGKEIEPPKDTPKELWEKMGVFVTLNRHNVPPQTALRGCIGFP 68
G VRLAR A YL+ K +PP D + EK GVF T+N + P LRGCIGFP
Sbjct: 18 GTKAVRLARAAASSYLRNEKLPDPPADPIFQ--EKHGVFTTINTY---PGNTLRGCIGFP 72
Query: 69 LPIYPLVKATIKAAIYSAVDDPRFPPVKLEEMDNIIVEVSVLTPPELIEGPPEERPKKIK 128
P YPL + I+++IY+A +DPRF P+K++E+ ++ EVS+LT P I PE+RPK +
Sbjct: 73 EPYYPLGEGIIRSSIYAATEDPRFEPMKIDEISHVTFEVSILTQPVEITVNPEDRPKAVH 132
Query: 129 VGRDGLIVEKGIYSGLLLPQVPIEWGWDEEEFLAETCWKAGLPPDCWLDEDTKVYRFTAE 188
+GRDGLI SGLLLPQV E+ + EEFL C KAGL CW + K+ +F A
Sbjct: 133 IGRDGLIAVYNGASGLLLPQVATEYRMNPEEFLEALCEKAGLWEGCWKYKKVKISKFQAT 192
Query: 189 IFEEEYPRGPVRRK 202
+F E+ P G V ++
Sbjct: 193 VFGEKDPEGVVEKR 206
>pir||A72705 hypothetical protein APE1056 - Aeropyrum pernix (strain K1)
>gi|5104726|dbj|BAA80041.1| (AP000060) 203aa long
hypothetical protein [Aeropyrum pernix]
Length = 203
Score = 168 bits (420), Expect = 7e-41
Identities = 89/192 (46%), Positives = 121/192 (62%), Gaps = 3/192 (1%)
Query: 13 VRLARRAIEEYLKTGKEIEPPKDTPKELWEKMGVFVTLNRHNVPPQTALRGCIGFPLPIY 72
+R+ARRA+EE+++ G+ ++ + +L FVTL R + LRGCIG P+
Sbjct: 1 MRIARRAVEEWVEHGRRLDV--EAGGKLGRPGAAFVTLERRS-GDGWELRGCIGVVRPVL 57
Query: 73 PLVKATIKAAIYSAVDDPRFPPVKLEEMDNIIVEVSVLTPPELIEGPPEERPKKIKVGRD 132
PLV+A + AA+ +A DPRF P+ EE+D + VEV+VL E + P ERP ++VG
Sbjct: 58 PLVEAVVTAAVDAASSDPRFEPLSREELDRVRVEVTVLGSMEPLPKKPHERPALVEVGLH 117
Query: 133 GLIVEKGIYSGLLLPQVPIEWGWDEEEFLAETCWKAGLPPDCWLDEDTKVYRFTAEIFEE 192
GL VEK Y+GLLLPQV ++ GWD FL C KAGLP CWL ED ++YRF A ++ E
Sbjct: 118 GLYVEKPPYAGLLLPQVAVDEGWDPILFLTWACIKAGLPGTCWLREDVEIYRFRAAVWRE 177
Query: 193 EYPRGPVRRKSL 204
PRGPV R+ L
Sbjct: 178 TEPRGPVVRRDL 189
>gb|AAK40539.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 227
Score = 167 bits (418), Expect = 1e-40
Identities = 97/200 (48%), Positives = 130/200 (64%), Gaps = 10/200 (5%)
Query: 3 KIKDEWGEFLVRLARRAIEEYLKTGKEIEPPKDTPKELWEKMGV-FVTLNR--HNVPPQT 59
++ +E G L+ +AR++I+E K K D P + +K G+ FVTL + +N +
Sbjct: 11 ELNEEIGRLLIEIARKSIKEEFKLDKLDLSKYDNP--ILDKKGLAFVTLEKIAYNT---S 65
Query: 60 ALRGCIGFPLPIYPLVKATIKAAIYSAVDDPRFPPVKLEEMDNIIVEVSVLTPPELIEGP 119
+LRGCIG+ + PL + AA +A DPRF P++ +E+ NII+EV+VLT PE I+
Sbjct: 66 SLRGCIGYVEAVAPLKQIAASAAKAAAFSDPRFNPLQEDELANIIIEVTVLTKPEEIKVK 125
Query: 120 PE-ERPKKIKVGRDGLIVEKGI-YSGLLLPQVPIEWGWDEEEFLAETCWKAGLPPDCWLD 177
+ PK IKVG DGLIVEKGI +SGLLLPQVP+E+ WDEE FLAETC KA L PDCWLD
Sbjct: 126 DRWDLPKIIKVGEDGLIVEKGILHSGLLLPQVPMEYCWDEETFLAETCIKASLEPDCWLD 185
Query: 178 EDTKVYRFTAEIFEEEYPRG 197
++ RF IF+E P G
Sbjct: 186 SSVRIKRFHGIIFKETKPNG 205
>pir||B72239 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982118|gb|AAD36617.1|AE001801_4 (AE001801)
conserved hypothetical protein [Thermotoga maritima]
Length = 174
Score = 117 bits (290), Expect = 1e-25
Identities = 79/181 (43%), Positives = 108/181 (59%), Gaps = 16/181 (8%)
Query: 13 VRLARRAIEEYLKTGKEIEPPKDTPKELWEKM-GVFVTLNRHNVPPQTALRGCIGFPLPI 71
V+ A R IE Y++ GK IEP + P+EL+++ G FVTL++ + +LRGCIG LP
Sbjct: 8 VKWAIRVIENYVRYGKVIEPDESVPEELFKRRAGAFVTLHKTD----GSLRGCIGTYLPT 63
Query: 72 YPLVKATIKA-AIYSAVDDPRFPPVKLEEMDNIIVEVSVLTPPELIEGPPEERPKKIKVG 130
P + I+ AI +A DPRFPPV +E+D+I+V V +L+PPE + E PKK
Sbjct: 64 KPNLALEIRDNAIAAATQDPRFPPVSPDELDDIVVHVDILSPPEPVRDISELDPKKY--- 120
Query: 131 RDGLIVEKGIYSGLLLPQVPIEWGWDEEEFLAETCWKAGLPPDCWLDEDTKVYRFTAEIF 190
G+IV KG GLLLP IE EE L KAG+P W D+D ++YRFT E +
Sbjct: 121 --GVIVVKGWRRGLLLPD--IEGVDTVEEQLRIAKLKAGIPE--W-DDDVEIYRFTVERY 173
Query: 191 E 191
+
Sbjct: 174 K 174
>gb|AAG20599.1| (AE005130) Vng2543c [Halobacterium sp. NRC-1]
Length = 210
Score = 76.9 bits (186), Expect = 2e-13
Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 7 EWGEFLVRLARRAIEEYLKTGKEIEPPKDTPKELWEKMGVFVTLNRHNVPPQTALRGCIG 66
E G V LAR ++E +++ G+ E P + + FV L + + LRGC G
Sbjct: 12 EDGARTVELARESVEAFVQNGQR-EQPGSMRDAFYNRTSAFVRLE--STRGRGRLRGCAG 68
Query: 67 FPLPIYPLVK-------ATIKAAIYSAVDDPRFPPVKLEEMDNIIVEVSVLTPPELIEGP 119
I+ L A ++AAI +A + V+ E+ NI V V ++ L + P
Sbjct: 69 AHGSIHELGNHDQQLGHAIVEAAIEAASEASCGSEVEDAELPNIRVSVCTVSNLVLTDDP 128
Query: 120 PEERPKKIKVGRDGLIVEKGIYSGLLLPQVPIEWGWDEEEFLAETCWKAGLPPDCWLDED 179
E+ I++G G+ ++ G + P +P+E W E+L TC KA LP W DED
Sbjct: 129 IED----IELGVHGVAIDGDGQHGWMYPTLPVENDWSVFEYLDRTCRKANLPDGAWQDED 184
Query: 180 TKVYRFTAEIFEE 192
V F ++F E
Sbjct: 185 VMVTLFEGQVFRE 197
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.142 0.444
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89075096
Number of Sequences: 2977
Number of extensions: 4179067
Number of successful extensions: 9057
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9032
Number of HSP's gapped (non-prelim): 11
length of query: 205
length of database: 189,106,746
effective HSP length: 49
effective length of query: 156
effective length of database: 159,780,883
effective search space: 24925817748
effective search space used: 24925817748
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 163 (67.9 bits)