BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0011 (PAB0011) DE:Hypothetical protein
         (248 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75186 hypothetical protein PAB0011 - Pyrococcus abyssi (st...   501  e-141

>pir||E75186 hypothetical protein PAB0011 - Pyrococcus abyssi (strain Orsay)
           >gi|5457449|emb|CAB48940.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 248
           
 Score =  501 bits (1276), Expect = e-141
 Identities = 248/248 (100%), Positives = 248/248 (100%)

Query: 1   MDILVIGDLHGVSIKIDVLKIPDIAIQLGDLSNYGEPDIIENLISELVTQLDPVPLLVIP 60
           MDILVIGDLHGVSIKIDVLKIPDIAIQLGDLSNYGEPDIIENLISELVTQLDPVPLLVIP
Sbjct: 1   MDILVIGDLHGVSIKIDVLKIPDIAIQLGDLSNYGEPDIIENLISELVTQLDPVPLLVIP 60

Query: 61  GNHDIYGLNDIFAAFQRFNKLVKRAGAIPLMEGPLILEEIGIVGVPGWYDYSLAPGYLNM 120
           GNHDIYGLNDIFAAFQRFNKLVKRAGAIPLMEGPLILEEIGIVGVPGWYDYSLAPGYLNM
Sbjct: 61  GNHDIYGLNDIFAAFQRFNKLVKRAGAIPLMEGPLILEEIGIVGVPGWYDYSLAPGYLNM 120

Query: 121 TKDEYEIKAFGFRRLEDADYIKSSLSDEELVRWNLNLLEKFISEIRESVNDVILALHFAP 180
           TKDEYEIKAFGFRRLEDADYIKSSLSDEELVRWNLNLLEKFISEIRESVNDVILALHFAP
Sbjct: 121 TKDEYEIKAFGFRRLEDADYIKSSLSDEELVRWNLNLLEKFISEIRESVNDVILALHFAP 180

Query: 181 FKDSLKYTGNPEIDYFSAYMGSQRFGEFALRHNIGLIVHGHTHRSIEYYIGKTKVVSVGL 240
           FKDSLKYTGNPEIDYFSAYMGSQRFGEFALRHNIGLIVHGHTHRSIEYYIGKTKVVSVGL
Sbjct: 181 FKDSLKYTGNPEIDYFSAYMGSQRFGEFALRHNIGLIVHGHTHRSIEYYIGKTKVVSVGL 240

Query: 241 RETELISL 248
           RETELISL
Sbjct: 241 RETELISL 248


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.144    0.420 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94503775
Number of Sequences: 2977
Number of extensions: 4095818
Number of successful extensions: 8182
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8181
Number of HSP's gapped (non-prelim): 1
length of query: 248
length of database: 189,106,746
effective HSP length: 52
effective length of query: 196
effective length of database: 157,985,422
effective search space: 30965142712
effective search space used: 30965142712
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)