BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0012 14888 15406 173 !not a gene!
         (173 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71219 hypothetical protein PH0018 - Pyrococcus horikoshii ...   298  2e-80
pir||S59860 hypothetical protein - Sulfolobus shibatae                160  8e-39
gb|AAA87625.1| (L34691) ORF [Sulfolobus shibatae]                     160  1e-38
pir||D72512 hypothetical protein APE2073 - Aeropyrum pernix (str...   113  1e-24

>pir||G71219 hypothetical protein PH0018 - Pyrococcus horikoshii
           >gi|3256403|dbj|BAA29086.1| (AP000001) 173aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 173
           
 Score =  298 bits (756), Expect = 2e-80
 Identities = 159/173 (91%), Positives = 162/173 (92%)

Query: 1   MVGPFSLWAAMTLTRVSIGSSPAFSAKVLGMTLRASAKASIANCSLPPTSLAYSSSLMLS 60
           MV PFSLWAAMTLT VSIGS PAFSA VLG+TLRASAKASIANCSLPPTS AYSSSLMLS
Sbjct: 1   MVCPFSLWAAMTLTSVSIGSRPAFSASVLGITLRASAKASIANCSLPPTSFAYSSSLMLS 60

Query: 61  SISAAPPPAMIFPSSRMSLTTLTASSRALSTSSTTCSVPPLMRIVTALGFLQPSTKIMFS 120
           SIS APPPA+IFPSS MSLTTL ASSRALSTSSTTCSVPPLM IVTALGFLQPSTKIMFS
Sbjct: 61  SISLAPPPAIIFPSSSMSLTTLMASSRALSTSSTTCSVPPLMSIVTALGFLQPSTKIMFS 120

Query: 121 PATFLSSTSSASPRSSGVRSLMLVTILAPVAFASFSMSLFLTLLTARIPYLAK 173
           PATFLSSTSSASPRSSGVRSLMLVTILAPVA ASFSMSLFLTLLTA IPYLA+
Sbjct: 121 PATFLSSTSSASPRSSGVRSLMLVTILAPVALASFSMSLFLTLLTANIPYLAR 173


>pir||S59860 hypothetical protein - Sulfolobus shibatae
           Length = 388
           
 Score =  160 bits (401), Expect = 8e-39
 Identities = 93/173 (53%), Positives = 116/173 (66%), Gaps = 1/173 (0%)

Query: 1   MVGPFSLWAAMTLTRVSIGSSPAFSAKVLGMTLRASAKASIANCSLPPTSLAYSSSLMLS 60
           +V P +  A  +++   I SSPA SAK++G++  ASA ASIANCSLPPT LAYS + + +
Sbjct: 21  LVNPLACLALKSIS-ADIASSPAVSAKIIGISSNASANASIANCSLPPTLLAYSLNFIAN 79

Query: 61  SISAAPPPAMIFPSSRMSLTTLTASSRALSTSSTTCSVPPLMRIVTALGFLQPSTKIMFS 120
           S S APPP  I  S+ M L    AS   LS SS   S  PL +I TA  FL PS   + S
Sbjct: 80  SNSIAPPPGNITGSNNMFLRACNASFILLSASSNAISFEPLNKIFTAFRFLAPSINTILS 139

Query: 121 PATFLSSTSSASPRSSGVRSLMLVTILAPVAFASFSMSLFLTLLTARIPYLAK 173
             T LSST+SA P+SSGV SL+L+ ILAP AF++FS+SL LTLLTA IP+LAK
Sbjct: 140 FPTLLSSTNSAYPKSSGVASLILLIILAPNAFSNFSISLLLTLLTANIPFLAK 192


>gb|AAA87625.1| (L34691) ORF [Sulfolobus shibatae]
           Length = 388
           
 Score =  160 bits (400), Expect = 1e-38
 Identities = 93/173 (53%), Positives = 116/173 (66%), Gaps = 1/173 (0%)

Query: 1   MVGPFSLWAAMTLTRVSIGSSPAFSAKVLGMTLRASAKASIANCSLPPTSLAYSSSLMLS 60
           +V P +  A  +++   I SSPA SAK++G++  ASA ASIANCSLPPT LAYS + + +
Sbjct: 21  LVNPLACLALKSIS-ADIASSPAVSAKIVGISSNASANASIANCSLPPTLLAYSLNFIAN 79

Query: 61  SISAAPPPAMIFPSSRMSLTTLTASSRALSTSSTTCSVPPLMRIVTALGFLQPSTKIMFS 120
           S S APPP  I  S+ M L    AS   LS SS   S  PL +I TA  FL PS   + S
Sbjct: 80  SNSIAPPPGNITGSNNMFLRACNASFILLSASSNAISFEPLNKIFTAFRFLAPSINTILS 139

Query: 121 PATFLSSTSSASPRSSGVRSLMLVTILAPVAFASFSMSLFLTLLTARIPYLAK 173
             T LSST+SA P+SSGV SL+L+ ILAP AF++FS+SL LTLLTA IP+LAK
Sbjct: 140 FPTLLSSTNSAYPKSSGVASLILLIILAPNAFSNFSISLLLTLLTANIPFLAK 192


>pir||D72512 hypothetical protein APE2073 - Aeropyrum pernix (strain K1)
           >gi|5105772|dbj|BAA81084.1| (AP000063) 177aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 177
           
 Score =  113 bits (280), Expect = 1e-24
 Identities = 66/124 (53%), Positives = 77/124 (61%)

Query: 8   WAAMTLTRVSIGSSPAFSAKVLGMTLRASAKASIANCSLPPTSLAYSSSLMLSSISAAPP 67
           WA ++ TR SIGS PA  A+  G    A A AS A+  LP +  AYS S + +S S APP
Sbjct: 54  WALLSFTRTSIGSWPALWARACGRASTALANASTASWVLPGSLDAYSYSTLATSASTAPP 113

Query: 68  PAMIFPSSRMSLTTLTASSRALSTSSTTCSVPPLMRIVTALGFLQPSTKIMFSPATFLSS 127
           PA I PS   S TTL+AS R LS SST+ S PPL  +VT  GFL PS   + S  TFLSS
Sbjct: 114 PATILPSIMASATTLSASWRDLSASSTSLSKPPLSSMVTLFGFLAPSMNTILSSPTFLSS 173

Query: 128 TSSA 131
           TSSA
Sbjct: 174 TSSA 177


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.125    0.341 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49451330
Number of Sequences: 2977
Number of extensions: 1535877
Number of successful extensions: 10773
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10768
Number of HSP's gapped (non-prelim): 4
length of query: 173
length of database: 189,106,746
effective HSP length: 62
effective length of query: 111
effective length of database: 152,000,552
effective search space: 16872061272
effective search space used: 16872061272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)