BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0013 15941 16267 109 !not a gene!
         (109 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D72686 hypothetical protein APE0908 - Aeropyrum pernix (str...   116  1e-25

>pir||D72686 hypothetical protein APE0908 - Aeropyrum pernix (strain K1)
           >gi|5104577|dbj|BAA79892.1| (AP000060) 159aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 159
           
 Score =  116 bits (287), Expect = 1e-25
 Identities = 64/105 (60%), Positives = 74/105 (69%)

Query: 2   MTMLGWMFWSSNSSAFLRSSPAMTTAVVVPSPASLSWVLATSTIILAAGCWMSISSRIVA 61
           M M+G  F S + SAF   +PA TT +VVPSP S SW LATST  LAAGC +SIS  IVA
Sbjct: 55  MIMVGCRFSSRSFSAFSSRAPARTTTLVVPSPTSASWALATSTSSLAAGCCISISFTIVA 114

Query: 62  PSFVITMSPRLSTSILSIPFGPRVVLTVSAIILAARMFILWASLP 106
           PS V  MSP+ STSILS P GPR++L++SA  LAA M  L ASLP
Sbjct: 115 PSLVTVMSPKASTSILSRPLGPRLLLSISASTLAASMLALRASLP 159


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.130    0.403 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35492722
Number of Sequences: 2977
Number of extensions: 1110759
Number of successful extensions: 4578
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4577
Number of HSP's gapped (non-prelim): 1
length of query: 109
length of database: 189,106,746
effective HSP length: 51
effective length of query: 58
effective length of database: 158,583,909
effective search space: 9197866722
effective search space used: 9197866722
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 159 (66.3 bits)