BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0014 (PAB0014) DE:Hypothetical protein
         (259 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75186 hypothetical protein PAB0014 - Pyrococcus abyssi (st...   529  e-149
pir||H71219 hypothetical protein PH0019 - Pyrococcus horikoshii ...   129  4e-29

>pir||G75186 hypothetical protein PAB0014 - Pyrococcus abyssi (strain Orsay)
           >gi|5457451|emb|CAB48942.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 259
           
 Score =  529 bits (1347), Expect = e-149
 Identities = 259/259 (100%), Positives = 259/259 (100%)

Query: 1   MGRKMKLLKVVLMTTLILAVISAGCIGSNSTQTTTTLTPEDIYEKIENQTQFAGIWHINF 60
           MGRKMKLLKVVLMTTLILAVISAGCIGSNSTQTTTTLTPEDIYEKIENQTQFAGIWHINF
Sbjct: 1   MGRKMKLLKVVLMTTLILAVISAGCIGSNSTQTTTTLTPEDIYEKIENQTQFAGIWHINF 60

Query: 61  SVNGSIVSRMDAYSYVTPEEIKVVRHSKGRIENEEWESISYINWSSRYNVGELNMLMRIG 120
           SVNGSIVSRMDAYSYVTPEEIKVVRHSKGRIENEEWESISYINWSSRYNVGELNMLMRIG
Sbjct: 61  SVNGSIVSRMDAYSYVTPEEIKVVRHSKGRIENEEWESISYINWSSRYNVGELNMLMRIG 120

Query: 121 NTSQPFRDAQFMNFTLAKKLAYPIGEIYLAFSPNFNFTKSKHFTTCNGNSCRIRVVREDS 180
           NTSQPFRDAQFMNFTLAKKLAYPIGEIYLAFSPNFNFTKSKHFTTCNGNSCRIRVVREDS
Sbjct: 121 NTSQPFRDAQFMNFTLAKKLAYPIGEIYLAFSPNFNFTKSKHFTTCNGNSCRIRVVREDS 180

Query: 181 KIPLMDQQGGMYTIEYVEANATLKDDKVKEIKIYVRTSRGEEEFMECKFLHPGESWDDII 240
           KIPLMDQQGGMYTIEYVEANATLKDDKVKEIKIYVRTSRGEEEFMECKFLHPGESWDDII
Sbjct: 181 KIPLMDQQGGMYTIEYVEANATLKDDKVKEIKIYVRTSRGEEEFMECKFLHPGESWDDII 240

Query: 241 KKIEEESRIFENQTQAILR 259
           KKIEEESRIFENQTQAILR
Sbjct: 241 KKIEEESRIFENQTQAILR 259


>pir||H71219 hypothetical protein PH0019 - Pyrococcus horikoshii
           >gi|3256404|dbj|BAA29087.1| (AP000001) 242aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 242
           
 Score =  129 bits (320), Expect = 4e-29
 Identities = 78/242 (32%), Positives = 136/242 (55%), Gaps = 19/242 (7%)

Query: 9   KVVLMTTLILAVISAGCIGSNSTQTTTTLTPEDIYEKIENQTQFAGIWHINF--SVNGSI 66
           K++L++ ++L +I AGCIG  +T+T  + +  D+Y K++N+T  A  W +    S NG +
Sbjct: 3   KLLLVSAVLLTLIVAGCIGGTTTETKVSRS--DLYSKLKNETTLAVTWSMELLNSTNGDV 60

Query: 67  VSRMDAYSYVTPEEIKVVRHSKGRIENEEWESISYINWSSRYNVGELNMLMRIGNTSQPF 126
           ++R +  + V P  I   R S+G      W S S I W    N G+L MLM I N ++ F
Sbjct: 61  LARSNGKAVVYPNLIISYRESRGN----NWLSKSLITWKD--NHGKLIMLMTIDNQTKKF 114

Query: 127 RDAQFMNFTLAKKLAYPIGEIYLAFSPNFNFTKSKHFTTCNGNSCRIRVVREDSKIPLMD 186
            D++  N T+A+ +A+P GE+ +    N  F  ++  T+CN + C + +VRE S++ L +
Sbjct: 115 EDSKEFNVTIARMMAFPRGELEMLLLDNLKFNSTRVKTSCN-DKCTLNIVRERSQV-LFN 172

Query: 187 QQGGMYTIEYVEANATLKDD--KVKEIKIYVRTSRGEEEFMECKFLHPGESWDDIIKKIE 244
            +G  ++I Y+E N T   D  ++ ++ I+++TS    E +  +F   GE     + K++
Sbjct: 173 ARGEAWSIIYMEGNVTFNPDNWEISQVVIFMKTSEDLAERITYQFYREGE-----VDKLK 227

Query: 245 EE 246
           EE
Sbjct: 228 EE 229


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.134    0.387 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95280870
Number of Sequences: 2977
Number of extensions: 3952813
Number of successful extensions: 9313
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9308
Number of HSP's gapped (non-prelim): 2
length of query: 259
length of database: 189,106,746
effective HSP length: 57
effective length of query: 202
effective length of database: 154,992,987
effective search space: 31308583374
effective search space used: 31308583374
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)