BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0017 (PAB0017) DE:Hypothetical protein
(339 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75187 hypothetical protein PAB0017 - Pyrococcus abyssi (st... 676 0.0
pir||G71220 hypothetical protein PH0026 - Pyrococcus horikoshii ... 526 e-148
pir||C75205 hypothetical protein PAB2243 - Pyrococcus abyssi (st... 127 2e-28
pir||E71240 hypothetical protein PH0183 - Pyrococcus horikoshii ... 118 9e-26
>pir||H75187 hypothetical protein PAB0017 - Pyrococcus abyssi (strain Orsay)
>gi|5457460|emb|CAB48951.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 339
Score = 676 bits (1725), Expect = 0.0
Identities = 339/339 (100%), Positives = 339/339 (100%)
Query: 1 MSLMEEWELALKNKDCEKLLEIFDEYFEQIEEDKIEEELKRVGEVAIECENFDLLHEVAH 60
MSLMEEWELALKNKDCEKLLEIFDEYFEQIEEDKIEEELKRVGEVAIECENFDLLHEVAH
Sbjct: 1 MSLMEEWELALKNKDCEKLLEIFDEYFEQIEEDKIEEELKRVGEVAIECENFDLLHEVAH 60
Query: 61 LYEHLGKTQEGIELYKRIVEKRKNKDPEDYAEALYYLADAYEHFGMPEEALKVYNELLEL 120
LYEHLGKTQEGIELYKRIVEKRKNKDPEDYAEALYYLADAYEHFGMPEEALKVYNELLEL
Sbjct: 61 LYEHLGKTQEGIELYKRIVEKRKNKDPEDYAEALYYLADAYEHFGMPEEALKVYNELLEL 120
Query: 121 ERKLNNEKEIALTLANIAIVKDELGETEEAIKLMEEARGLFEKLNDERNFLISLIDLAHF 180
ERKLNNEKEIALTLANIAIVKDELGETEEAIKLMEEARGLFEKLNDERNFLISLIDLAHF
Sbjct: 121 ERKLNNEKEIALTLANIAIVKDELGETEEAIKLMEEARGLFEKLNDERNFLISLIDLAHF 180
Query: 181 NYELGKYDVALELIREVLGNPIDKEIEVNARLVESEVYSGQGKYKDAALSLRNALQRAED 240
NYELGKYDVALELIREVLGNPIDKEIEVNARLVESEVYSGQGKYKDAALSLRNALQRAED
Sbjct: 181 NYELGKYDVALELIREVLGNPIDKEIEVNARLVESEVYSGQGKYKDAALSLRNALQRAED 240
Query: 241 DEELFGLAFDSIIEFLEDLFNEGKYSELSEIPKLFAELFEDDTRHFFEAIAKLAEWRLGN 300
DEELFGLAFDSIIEFLEDLFNEGKYSELSEIPKLFAELFEDDTRHFFEAIAKLAEWRLGN
Sbjct: 241 DEELFGLAFDSIIEFLEDLFNEGKYSELSEIPKLFAELFEDDTRHFFEAIAKLAEWRLGN 300
Query: 301 ENARKDFEELYNKIENEELRQIIDEWKRPKLSLSLGLSL 339
ENARKDFEELYNKIENEELRQIIDEWKRPKLSLSLGLSL
Sbjct: 301 ENARKDFEELYNKIENEELRQIIDEWKRPKLSLSLGLSL 339
>pir||G71220 hypothetical protein PH0026 - Pyrococcus horikoshii
>gi|3256411|dbj|BAA29094.1| (AP000001) 338aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 338
Score = 526 bits (1340), Expect = e-148
Identities = 245/334 (73%), Positives = 297/334 (88%)
Query: 4 MEEWELALKNKDCEKLLEIFDEYFEQIEEDKIEEELKRVGEVAIECENFDLLHEVAHLYE 63
M EWELALKNKDC+KLLE+FD+YF+++ EDK+EEELKRVGEVA+ECE+FDL+HE+AH+YE
Sbjct: 5 MNEWELALKNKDCKKLLELFDDYFDEVSEDKLEEELKRVGEVAVECEDFDLIHEIAHIYE 64
Query: 64 HLGKTQEGIELYKRIVEKRKNKDPEDYAEALYYLADAYEHFGMPEEALKVYNELLELERK 123
HLG+ ++GI+LYKRIVEKRK ++ EDYAEALYYLADAY+HFGMPEEALK Y ELLELE++
Sbjct: 65 HLGEAEKGIDLYKRIVEKRKGRNTEDYAEALYYLADAYDHFGMPEEALKTYEELLELEKR 124
Query: 124 LNNEKEIALTLANIAIVKDELGETEEAIKLMEEARGLFEKLNDERNFLISLIDLAHFNYE 183
+ N++EI LTLAN+AI+KDELG EEAIKLMEEAR +FE+L DE N+LISLIDLAHF YE
Sbjct: 125 IGNKREIGLTLANLAIIKDELGNVEEAIKLMEEARKIFEELKDENNYLISLIDLAHFKYE 184
Query: 184 LGKYDVALELIREVLGNPIDKEIEVNARLVESEVYSGQGKYKDAALSLRNALQRAEDDEE 243
LG+Y+ A++LIREVL NP+DKEIEVNARLVESE+Y+G+ KYK+AA+SLRNALQR+EDDEE
Sbjct: 185 LGEYEEAMKLIREVLRNPVDKEIEVNARLVESEIYAGERKYKEAAISLRNALQRSEDDEE 244
Query: 244 LFGLAFDSIIEFLEDLFNEGKYSELSEIPKLFAELFEDDTRHFFEAIAKLAEWRLGNENA 303
LF L FDS+ EFLE LFNE +Y EL E+ LFAELFEDDT++FF AI LAEWRLGNE A
Sbjct: 245 LFSLVFDSLTEFLEGLFNESRYRELVEVSPLFAELFEDDTKYFFNAIKGLAEWRLGNEKA 304
Query: 304 RKDFEELYNKIENEELRQIIDEWKRPKLSLSLGL 337
R++FEE Y I+NEEL+ ++DEW+RPKLSL L L
Sbjct: 305 REEFEENYKNIQNEELKALLDEWRRPKLSLGLNL 338
>pir||C75205 hypothetical protein PAB2243 - Pyrococcus abyssi (strain Orsay)
>gi|5457599|emb|CAB49090.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 316
Score = 127 bits (316), Expect = 2e-28
Identities = 101/325 (31%), Positives = 161/325 (49%), Gaps = 17/325 (5%)
Query: 1 MSLMEEWELALKNKDCEKLLEIFDEYFEQIEEDKIEEELKRVGEVAIECENFDLLHEVAH 60
M E EL LK D E+ E+ + +++E+++++E L+ +VA E + +LL V +
Sbjct: 1 MKAQEILEL-LKTGDIERAKEMLSKSIDELEDEELKEILEVAEKVAREKGDVELLKMVTY 59
Query: 61 LYEHLGKTQEGIELYKRIVEKRKNKDPEDYAEALYYLADAYEHFGMPEEALKVYNELLEL 120
Y GI+ K E K K E L+ LAD Y G PE AL++Y +LLE
Sbjct: 60 YYAEFF----GIDKLKEFEEFAKGKGKE----GLFQLADLYSLLGYPERALQIYRDLLEG 111
Query: 121 ERKLNNEKEIALTLANIAIVKDELGETEEAIKLMEEARGLFEKLNDERNFLISLIDLAHF 180
E + + I IA + DEL E E+A+ +E+A F+K + + LA+
Sbjct: 112 EE---DNETIGEIYYGIATIHDELQEYEKALDAIEKAVDAFKKCGCREKLEQAELYLAYI 168
Query: 181 NYELGKYDVALELIREVLGNPIDKEIEVNARLVESEVYSGQGKYKDAALSLRNALQRAED 240
+E GK + A E + ++L D EI+ LV E++ + Y+ A +L
Sbjct: 169 TFENGKIEEAKETLGKLLAETEDSEIKAQVHLVFKEIFEDEENYEAAIHEALYSLLEG-G 227
Query: 241 DEELFGLAFDSIIEFLEDLFNEGKYSEL-SEIPKLFAELFEDDTRHFFEAIAKLAEWRLG 299
E+F +AFD I+ + L E K+ E+ S +P A L + FFE I ++A +R G
Sbjct: 228 RGEVFDVAFDGFIDLMWQLILEDKFDEIASNMPMFKAAL--PELGDFFEGIRRIALYRKG 285
Query: 300 NENARKDFEELYNKIENEELRQIID 324
E R+D E+ KI++E L I++
Sbjct: 286 -EIGREDVSEIIMKIKDERLVSILE 309
>pir||E71240 hypothetical protein PH0183 - Pyrococcus horikoshii
>gi|3256569|dbj|BAA29252.1| (AP000001) 318aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 318
Score = 118 bits (293), Expect = 9e-26
Identities = 91/316 (28%), Positives = 163/316 (50%), Gaps = 16/316 (5%)
Query: 11 LKNKDCEKLLEIFDEYFEQIEEDKIEEELKRVGEVAIECENFDLLHEVAHLYEHLGKTQE 70
LK D EK + + + + +++++E L+ VA E E+ +LL V + Y
Sbjct: 10 LKKGDLEKAKDALSKEIDNLSDEELKEILEVAESVAKEKEDIELLKLVVYYYAEFF---- 65
Query: 71 GIELYKRIVEKRKNKDPEDYAEALYYLADAYEHFGMPEEALKVYNELLELERKLNNEKE- 129
GI+ + K K E L +LAD Y G PE+AL +Y ELL+ + L EKE
Sbjct: 66 GIDKLEEFEGIAKEKG----YEGLMHLADLYSLLGYPEKALDIYRELLKTD--LIKEKEH 119
Query: 130 IALTLANIAIVKDELGETEEAIKLMEEARGLFEKLNDERNFLISLIDLAHFNYELGKYDV 189
I IA + DEL E ++A++ + EA F++ N+ + + A+ +E G D
Sbjct: 120 IGEIYYGIATIHDELQEYDKALEAINEAVKAFKESNNVEKLHQAEVYRAYITFENGDRDK 179
Query: 190 ALELIREVLGNPIDKEIEVNARLVESEVYSGQGKYKDAAL-SLRNALQRAEDDEELFGLA 248
A E++ +L + ++EI+ LV E++ + Y+ A SL + ++ D E+F LA
Sbjct: 180 AKEILAGLLPHVTNREIKAQIHLVFKEIFEDEENYEAAIQESLYSLIEGI--DTEVFDLA 237
Query: 249 FDSIIEFLEDLFNEGKYSELSEIPKLFAELFEDDTRHFFEAIAKLAEWRLGNENARKDFE 308
FD +I+ + +L E K+ E+ + +F ++ + FFE + ++A +R G + R++
Sbjct: 238 FDGLIDLIWELILEDKFEEIYKSMPMF-KVAIPSLKDFFEGVRRIAMYREG-KIGREEVS 295
Query: 309 ELYNKIENEELRQIID 324
E+ K+++E L I++
Sbjct: 296 EILMKVKDERLVSILE 311
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.137 0.376
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124375890
Number of Sequences: 2977
Number of extensions: 5424701
Number of successful extensions: 19609
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19589
Number of HSP's gapped (non-prelim): 4
length of query: 339
length of database: 189,106,746
effective HSP length: 59
effective length of query: 280
effective length of database: 153,796,013
effective search space: 43062883640
effective search space used: 43062883640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 165 (68.7 bits)