BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0022 30882 31304 141 !not a gene!
         (141 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C71221 hypothetical protein PH0030 - Pyrococcus horikoshii ...    90  9e-18

>pir||C71221 hypothetical protein PH0030 - Pyrococcus horikoshii
          >gi|3256415|dbj|BAA29098.1| (AP000001) 112aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 112
          
 Score = 90.5 bits (221), Expect = 9e-18
 Identities = 46/99 (46%), Positives = 63/99 (63%)

Query: 1  MLVLWILRELLVKFIPEFLELLRIRDFRLLPRLNYHRFKILAPHDSPETTSSTSPLRVID 60
          MLVL I  + LV+FIPE  +LLRI + R    LN +  K+L PH+  + TSST  L ++D
Sbjct: 1  MLVLRIRGKPLVEFIPEGFKLLRISNLRFFSWLNNYGLKLLTPHNRSKATSSTGSLGIVD 60

Query: 61 YVSYLHQPFTSWAYGGYASIWILPPELFGHFIIPLSPEV 99
          Y+SY ++P +   YGGY    IL P+    FI+PLSPE+
Sbjct: 61 YISYPYEPLSGRTYGGYTCFRILLPQFPSCFIVPLSPEL 99


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.146    0.489 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64645826
Number of Sequences: 2977
Number of extensions: 2889683
Number of successful extensions: 10632
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10631
Number of HSP's gapped (non-prelim): 1
length of query: 141
length of database: 189,106,746
effective HSP length: 44
effective length of query: 97
effective length of database: 162,773,318
effective search space: 15789011846
effective search space used: 15789011846
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 161 (67.1 bits)