BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0023 (PAB0023) DE:Hypothetical protein
(204 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75189 hypothetical protein PAB0023 - Pyrococcus abyssi (st... 412 e-114
pir||F71229 hypothetical protein PH0096 - Pyrococcus horikoshii ... 268 3e-71
gi|11425166 CGI-83 protein [Homo sapiens] 77 1e-13
gi|7705793 CGI-83 protein [Homo sapiens] >gi|11359880|pir||T4460... 77 1e-13
emb|CAC11234.1| (AL445063) conserved hypothetical protein [Therm... 74 1e-12
dbj|BAB05556.1| (AP001513) unknown conserved protein [Bacillus h... 73 2e-12
pir||B69900 conserved hypothetical protein yobT - Bacillus subti... 72 4e-12
pir||B75083 probable hydroxyacylglutathione hydrolase (EC 3.1.2.... 68 8e-11
>pir||A75189 hypothetical protein PAB0023 - Pyrococcus abyssi (strain Orsay)
>gi|5457469|emb|CAB48960.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 204
Score = 412 bits (1047), Expect = e-114
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MILMEEVIPGIYRIFDTFVNVYIVDRGDHLVLVDTGIESTCEKIIEAVKKLGKPLKAVIL 60
MILMEEVIPGIYRIFDTFVNVYIVDRGDHLVLVDTGIESTCEKIIEAVKKLGKPLKAVIL
Sbjct: 1 MILMEEVIPGIYRIFDTFVNVYIVDRGDHLVLVDTGIESTCEKIIEAVKKLGKPLKAVIL 60
Query: 61 THGHMDHTGSLRCLKEVLNPIVASQEEEVEMIERNTGVKVDVKLKDGELFEGFRVLHKPG 120
THGHMDHTGSLRCLKEVLNPIVASQEEEVEMIERNTGVKVDVKLKDGELFEGFRVLHKPG
Sbjct: 61 THGHMDHTGSLRCLKEVLNPIVASQEEEVEMIERNTGVKVDVKLKDGELFEGFRVLHKPG 120
Query: 121 HTKGSICLLDEDSKSLFVGDLVVEENGKLKEVPHQYSMDPEMNRKRIIELLEVEFENLMP 180
HTKGSICLLDEDSKSLFVGDLVVEENGKLKEVPHQYSMDPEMNRKRIIELLEVEFENLMP
Sbjct: 121 HTKGSICLLDEDSKSLFVGDLVVEENGKLKEVPHQYSMDPEMNRKRIIELLEVEFENLMP 180
Query: 181 AHGNPIIGKGKEKIRELVESFNLS 204
AHGNPIIGKGKEKIRELVESFNLS
Sbjct: 181 AHGNPIIGKGKEKIRELVESFNLS 204
>pir||F71229 hypothetical protein PH0096 - Pyrococcus horikoshii
>gi|3256482|dbj|BAA29165.1| (AP000001) 198aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 198
Score = 268 bits (678), Expect = 3e-71
Identities = 124/192 (64%), Positives = 158/192 (81%)
Query: 11 IYRIFDTFVNVYIVDRGDHLVLVDTGIESTCEKIIEAVKKLGKPLKAVILTHGHMDHTGS 70
I+RI D FVNVYI+DRGDHLVL+DTGIESTCEKI++ +++LGKPLK VI+TH H+DHTGS
Sbjct: 2 IHRIKDEFVNVYIIDRGDHLVLIDTGIESTCEKILKKIEELGKPLKTVIITHYHLDHTGS 61
Query: 71 LRCLKEVLNPIVASQEEEVEMIERNTGVKVDVKLKDGELFEGFRVLHKPGHTKGSICLLD 130
L+C+K+ V + EEEV+ IE TGV+VDV +KDG++ EG +V H PGHT+GSICLLD
Sbjct: 62 LKCVKDGTGAKVVAHEEEVKAIEEKTGVRVDVPVKDGDVVEGLKVFHMPGHTRGSICLLD 121
Query: 131 EDSKSLFVGDLVVEENGKLKEVPHQYSMDPEMNRKRIIELLEVEFENLMPAHGNPIIGKG 190
E+S +LFVGDL+VE +GKL EVP QYS DP MNR+RI ELL +EF+ + PAHG P++
Sbjct: 122 EESGALFVGDLMVERDGKLYEVPQQYSEDPMMNRERIKELLNIEFKAIYPAHGEPVLENA 181
Query: 191 KEKIRELVESFN 202
KEK++ELVESF+
Sbjct: 182 KEKVKELVESFS 193
>gi|11425166 CGI-83 protein [Homo sapiens]
Length = 259
Score = 77.3 bits (187), Expect = 1e-13
Identities = 61/204 (29%), Positives = 103/204 (49%), Gaps = 36/204 (17%)
Query: 20 NVYIVDRGDHLVLVDTGIESTCEKII---EAVKKLGKPLKAVILTHGHMDHTGSLR---- 72
N Y+V G +L+DTG + E I +A+ + ++ +++TH H DH+G +
Sbjct: 32 NTYLVGTGPRRILIDTGEPAIPEYISCLKQALTEFNTAIQEIVVTHWHRDHSGGIGDICK 91
Query: 73 --------CLKEV-LNPIVASQEEEVEMIERNTGVKVDVKLKDGELF--EG--FRVLHKP 119
C+K++ NP Q EE+ G + V LKDG++ EG RVL+ P
Sbjct: 92 SINNDTTYCIKKLPRNP----QREEII----GNGEQQYVYLKDGDVIKTEGATLRVLYTP 143
Query: 120 GHTKGSICLLDEDSKSLFVGDLVVEENGKLKEVPHQYSMDPEMNRKRIIELLEVEFENLM 179
GHT + LL E+ ++F GD ++ E + E + Y MN + ELL+++ + +
Sbjct: 144 GHTDDHMALLLEEENAIFSGDCILGEGTTVFEDLYDY-----MNSLK--ELLKIKADIIY 196
Query: 180 PAHGNPIIGKGKEKIRELVESFNL 203
P HG P+I + KI++ + N+
Sbjct: 197 PGHG-PVIHNAEAKIQQYISHRNI 219
>gi|7705793 CGI-83 protein [Homo sapiens] >gi|11359880|pir||T44603 hypothetical
protein CGI-83 [imported] - human
>gi|4929635|gb|AAD34078.1|AF151841_1 (AF151841) CGI-83
protein [Homo sapiens]
Length = 288
Score = 77.3 bits (187), Expect = 1e-13
Identities = 61/204 (29%), Positives = 103/204 (49%), Gaps = 36/204 (17%)
Query: 20 NVYIVDRGDHLVLVDTGIESTCEKII---EAVKKLGKPLKAVILTHGHMDHTGSLR---- 72
N Y+V G +L+DTG + E I +A+ + ++ +++TH H DH+G +
Sbjct: 32 NTYLVGTGPRRILIDTGEPAIPEYISCLKQALTEFNTAIQEIVVTHWHRDHSGGIGDICK 91
Query: 73 --------CLKEV-LNPIVASQEEEVEMIERNTGVKVDVKLKDGELF--EG--FRVLHKP 119
C+K++ NP Q EE+ G + V LKDG++ EG RVL+ P
Sbjct: 92 SINNDTTYCIKKLPRNP----QREEII----GNGEQQYVYLKDGDVIKTEGATLRVLYTP 143
Query: 120 GHTKGSICLLDEDSKSLFVGDLVVEENGKLKEVPHQYSMDPEMNRKRIIELLEVEFENLM 179
GHT + LL E+ ++F GD ++ E + E + Y MN + ELL+++ + +
Sbjct: 144 GHTDDHMALLLEEENAIFSGDCILGEGTTVFEDLYDY-----MNSLK--ELLKIKADIIY 196
Query: 180 PAHGNPIIGKGKEKIRELVESFNL 203
P HG P+I + KI++ + N+
Sbjct: 197 PGHG-PVIHNAEAKIQQYISHRNI 219
>emb|CAC11234.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 207
Score = 73.7 bits (178), Expect = 1e-12
Identities = 55/200 (27%), Positives = 88/200 (43%), Gaps = 20/200 (10%)
Query: 6 EVIPGIYRIFDTFVNVYIVDRGDHLVLVDTGIESTCEKIIEAVKKLGKPLKAVILTHGHM 65
++ G+ RI N Y++ +L+DTG +KII+ K G VI+TH H
Sbjct: 7 KISEGVERIDGVTANSYLLTLDGKNILIDTGTAGGGKKIIDYFNKNGTKPDYVIVTHHHA 66
Query: 66 DHTGSLRCLKEVLNPIVASQEEEVEMIERN--------------TGV-----KVDVKLKD 106
DH G L+ + E NP + + E+++I TG+ DVK
Sbjct: 67 DHVGGLKEISERFNPEIYVPDLEMKIIRGEEDPPKPRSFFGRMITGMLKFEPVKDVKPVS 126
Query: 107 GELFEGFRVLHKPGHTKGSICLLDEDSKSLFVGDLVVEENGKLKEVPHQYSMDPEMNRKR 166
G + PGHT GS + ED LF GD VE G+LK + +S + +
Sbjct: 127 KASIPGIEEMATPGHTIGSTSYIVEDLHILFSGDAAVESGGELK-INKSFSYEINSAERS 185
Query: 167 IIELLEVEFENLMPAHGNPI 186
+ + ++ ++P HG+ +
Sbjct: 186 LEIIKGMKGYLVLPGHGDKV 205
>dbj|BAB05556.1| (AP001513) unknown conserved protein [Bacillus halodurans]
Length = 236
Score = 73.4 bits (177), Expect = 2e-12
Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 25/203 (12%)
Query: 6 EVIPGIYRIFDTFV---NVYIVDRGDHLVLVDTGIESTCEKIIEAVKKLGKPLKAVILTH 62
+V P IY++ F+ + +IV + + +VDTG+ ++I++ +KLGK +K V+LTH
Sbjct: 5 QVSPHIYKLESWFLLKMSAWIVKEDEGVYIVDTGMPYMGKRILKEAEKLGK-VKGVLLTH 63
Query: 63 GHMDHTGSLRCLKEVLNPIVASQEEEVEMIERNT--------------GVKVDVKL-KDG 107
GH DH G L+ + ++ + V +++ +E GV + + +DG
Sbjct: 64 GHSDHVGGLKKILDIQDLPVYVHTLDIKHMEGKEPFPGRKKREYLVEPGVAKPLPVDEDG 123
Query: 108 EL--FEGFRVLHKPGHTKGSICLLDEDSKSLFVGDLVVEENGKLKEVPHQYS--MDPEMN 163
E F H PGH+ G +C + + L GDL + GKL++ ++ M+ +
Sbjct: 124 EFRCFGNLVPYHTPGHSPGHVCYYHKKDRVLIGGDLFTSKRGKLQQPIKMFTADMNEAVR 183
Query: 164 RKRIIELLEVEFENLMPAHGNPI 186
I++ L+ ++ HGN I
Sbjct: 184 SGEIVKKLQPSKVSI--CHGNDI 204
>pir||B69900 conserved hypothetical protein yobT - Bacillus subtilis
>gi|2619046|gb|AAB84470.1| (AF027868) YobT [Bacillus
subtilis] >gi|2634301|emb|CAB13800.1| (Z99114) similar
to hypothetical proteins [Bacillus subtilis]
Length = 233
Score = 72.2 bits (174), Expect = 4e-12
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 20/142 (14%)
Query: 19 VNVYIVDRGDHLVLVDTGIESTCEKIIEAVKKLGKPLKAVILTHGHMDHTGSLRCLKEVL 78
VN Y+V+ + + L+D + + + II+AV +LGKPL+ ++LTH H DH GSL L +
Sbjct: 21 VNCYLVEEENEVTLIDAALPGSYKGIIQAVNQLGKPLQHILLTHAHGDHVGSLDTLAQTF 80
Query: 79 -NPIVASQEEEVEMIERNTGVKVDVK-------------------LKDGELFEGFRVLHK 118
+ V E + +++ +T ++ D L GE +
Sbjct: 81 PHAKVMISERDSFLLQGDTSLRQDEPQTPIKGGIPKHIQTKPHQLLTGGETIGSLLAIPT 140
Query: 119 PGHTKGSICLLDEDSKSLFVGD 140
PGHT GS+ LD + +L GD
Sbjct: 141 PGHTPGSMSFLDTRNGTLIAGD 162
>pir||B75083 probable hydroxyacylglutathione hydrolase (EC 3.1.2.6) PAB0703
[imported] - Pyrococcus abyssi (strain Orsay)
>gi|5458479|emb|CAB49967.1| (AJ248286)
HYDROXYACYLGLUTATHIONE HYDROLASE related (EC 3.1.2.6)
(GLYOXALASE II) [Pyrococcus abyssi]
Length = 222
Score = 67.9 bits (163), Expect = 8e-11
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 34/196 (17%)
Query: 20 NVYIVDRGDHLVLVDTGIESTCEKIIEAVKKLG--KPLKAVIL--THGHMDHTGSLRCLK 75
NVY + D L++VDTG K ++ + G + + VI+ TH H DH G K
Sbjct: 21 NVYFLKSKDELLIVDTGTGVYWNKYLDTARNEGWLENVSKVIIFNTHEHFDHVGGNLVFK 80
Query: 76 EVLNPI-VASQEEEVEMIERNTGV--------------KVDVKLKDGELFE----GFRVL 116
E L + AS + + +E +V++KL+DG+ + R++
Sbjct: 81 EKLKVVEFASHKLTAKALEEGDDYIILSYYYGRRYDPHEVELKLEDGDEIKVGKVKLRLI 140
Query: 117 HKPGHTKGSICLLDEDSKSLFVGDLVVEENGKLKEVPHQYSMDPEMNRKRIIELLEV--- 173
H PGHT+GS CL E+ + +F GD V ++ P N +I+E LE+
Sbjct: 141 HTPGHTRGSSCLYYEEERIMFTGDTVFLGTYGRTDL-------PTGNEDKIVESLELLKS 193
Query: 174 -EFENLMPAHGNPIIG 188
+ +P HG I G
Sbjct: 194 FDVRLGLPGHGRVIKG 209
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.141 0.397
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78538283
Number of Sequences: 2977
Number of extensions: 3321828
Number of successful extensions: 11694
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 11682
Number of HSP's gapped (non-prelim): 8
length of query: 204
length of database: 189,106,746
effective HSP length: 55
effective length of query: 149
effective length of database: 156,189,961
effective search space: 23272304189
effective search space used: 23272304189
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)