BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0025 (cbib) DE:cobalamin biosynthesis protein B
(290 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75190 cobalamin biosynthesis protein B PAB0025 - Pyrococcu... 580 e-165
sp|O58114|COBD_PYRHO PROBABLE COBALAMIN BIOSYNTHESIS PROTEIN COB... 391 e-108
gi|11498934 cobalamin biosynthesis protein (cbiB) [Archaeoglobus... 232 3e-60
sp|Q58710|COBD_METJA PROBABLE COBALAMIN BIOSYNTHESIS PROTEIN COB... 202 4e-51
sp|O27460|COBD_METTH PROBABLE COBALAMIN BIOSYNTHESIS PROTEIN COB... 184 9e-46
gb|AAK43329.1| Cobalamin biosynthesis protein B (cbiB) [Sulfolob... 169 4e-41
emb|CAC11224.1| (AL445063) COBYRIC ACID SYNTHASE related protein... 167 2e-40
sp|Q52683|COBD_RHOCA COBALAMIN BIOSYNTHESIS PROTEIN COBD >gi|744... 152 4e-36
pir||S52223 hypothetical protein 945 - Rhodobacter capsulatus >g... 151 8e-36
emb|CAB40735.1| (AJ011317) CobD protein [Methylobacterium sp. CM4] 139 4e-32
dbj|BAB05307.1| (AP001512) cobalamin biosynthesis [Bacillus halo... 137 1e-31
sp|P21634|COBD_PSEDE COBALAMIN BIOSYNTHESIS PROTEIN COBD >gi|949... 137 2e-31
pir||A83486 cobalamin biosynthetic protein CobD PA1275 [imported... 135 7e-31
gi|10957439 cobalamin biosynthesis protein CobD, putative [Deino... 127 1e-28
sp|Q05600|CBIB_SALTY CBIB PROTEIN >gi|154421|gb|AAA27253.1| (L12... 126 3e-28
gb|AAG19854.1| (AE005070) Vng1578h [Halobacterium sp. NRC-1] 116 4e-25
sp|P74475|COBD_SYNY3 COBALAMIN BIOSYNTHESIS PROTEIN COBD >gi|744... 106 3e-22
sp|Q10518|COBD_MYCTU COBALAMIN BIOSYNTHESIS PROTEIN COBD >gi|744... 99 4e-20
emb|CAB59463.1| (AL132644) cobalamin biosynthesis protein [Strep... 93 4e-18
sp|Q9YAA0|COBD_AERPE PROBABLE COBALAMIN BIOSYNTHESIS PROTEIN COB... 93 4e-18
gb|AAG23557.1|AF244608_1 (AF244608) cobalamin biosynthesis prote... 73 3e-12
>pir||C75190 cobalamin biosynthesis protein B PAB0025 - Pyrococcus abyssi
(strain Orsay) >gi|5457479|emb|CAB48970.1| (AJ248283)
cobalamin biosynthesis protein B [Pyrococcus abyssi]
Length = 290
Score = 580 bits (1478), Expect = e-165
Identities = 290/290 (100%), Positives = 290/290 (100%)
Query: 1 MNPLILLGLALIWDLLLGEPPAKIHPVVWFGKIAGFLDNRWRRRGKIGFLAGAFVTFIIV 60
MNPLILLGLALIWDLLLGEPPAKIHPVVWFGKIAGFLDNRWRRRGKIGFLAGAFVTFIIV
Sbjct: 1 MNPLILLGLALIWDLLLGEPPAKIHPVVWFGKIAGFLDNRWRRRGKIGFLAGAFVTFIIV 60
Query: 61 ALAFFLSLIPSYLTFPLDYLLAIYLLKSSFAIRSLYEHVARTVTEDIEEKRKTVSMIVSR 120
ALAFFLSLIPSYLTFPLDYLLAIYLLKSSFAIRSLYEHVARTVTEDIEEKRKTVSMIVSR
Sbjct: 61 ALAFFLSLIPSYLTFPLDYLLAIYLLKSSFAIRSLYEHVARTVTEDIEEKRKTVSMIVSR 120
Query: 121 DVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNTLDAMFGYRDER 180
DVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNTLDAMFGYRDER
Sbjct: 121 DVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNTLDAMFGYRDER 180
Query: 181 YEYFGKFPARLDDILNFIPARLTVLLYLPFGVKVLKYYKLARFKINSDKPIAAMSAVLGV 240
YEYFGKFPARLDDILNFIPARLTVLLYLPFGVKVLKYYKLARFKINSDKPIAAMSAVLGV
Sbjct: 181 YEYFGKFPARLDDILNFIPARLTVLLYLPFGVKVLKYYKLARFKINSDKPIAAMSAVLGV 240
Query: 241 WLEKPGAYRFPGREPRDEDIKRALDVYKLVVAEYLSIVFVLKVVQLCLNP 290
WLEKPGAYRFPGREPRDEDIKRALDVYKLVVAEYLSIVFVLKVVQLCLNP
Sbjct: 241 WLEKPGAYRFPGREPRDEDIKRALDVYKLVVAEYLSIVFVLKVVQLCLNP 290
>sp|O58114|COBD_PYRHO PROBABLE COBALAMIN BIOSYNTHESIS PROTEIN COBD
>gi|7447318|pir||E71145 probable cobalamin biosynthesis
protein D - Pyrococcus horikoshii
>gi|3256767|dbj|BAA29450.1| (AP000002) 283aa long
hypothetical cobalamin biosynthesis protein D
[Pyrococcus horikoshii]
Length = 283
Score = 391 bits (994), Expect = e-108
Identities = 189/274 (68%), Positives = 229/274 (82%), Gaps = 2/274 (0%)
Query: 9 LALIWDLLLGEPPAKIHPVVWFGKIAGFLDNRWRRRGK-IGFLAGAFVTFIIVALAFFLS 67
LAL WDLLLGEPPA +HPVVWFGK+ F+D+ + RR I FLAG F T ++++ AF LS
Sbjct: 6 LALGWDLLLGEPPAVVHPVVWFGKLIAFIDSHYSRRSPAIDFLAGLFATLVVLSFAFLLS 65
Query: 68 LIPSYLTFPLDYLLAIYLLKSSFAIRSLYEHVARTVTEDIEEKRKTVSMIVSRDVKVLDL 127
++P Y +PL+YLL++YLLKSSFAIRSLYEHV RT+ +D+EE RK VSMIVSRD L
Sbjct: 66 ILPLYAPYPLNYLLSVYLLKSSFAIRSLYEHVRRTMKDDVEEMRKEVSMIVSRDTSKLGR 125
Query: 128 AHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNTLDAMFGYRDERYEYFGKF 187
HL SA+IESLAEN NDSVVAPLFY++LFGLPGA+VYRAVNTLDAM GYR RYEYFGKF
Sbjct: 126 EHLISASIESLAENTNDSVVAPLFYYLLFGLPGALVYRAVNTLDAMVGYRTSRYEYFGKF 185
Query: 188 PARLDDILNFIPARLTVLLYLPFGV-KVLKYYKLARFKINSDKPIAAMSAVLGVWLEKPG 246
ARLDDILNF+PAR+TVLL+LP +V++YYK+ARFK+NSDKPIAAMSAVLG+WLEKP
Sbjct: 186 SARLDDILNFLPARITVLLFLPLNPRRVIRYYKMARFKVNSDKPIAAMSAVLGIWLEKPN 245
Query: 247 AYRFPGREPRDEDIKRALDVYKLVVAEYLSIVFV 280
YRFPGR+PR EDI+RAL VY +VV+E++ ++ +
Sbjct: 246 IYRFPGRDPRMEDIERALKVYVIVVSEWILLLLL 279
>gi|11498934 cobalamin biosynthesis protein (cbiB) [Archaeoglobus fulgidus]
>gi|6225179|sp|O28933|COBD_ARCFU PROBABLE COBALAMIN
BIOSYNTHESIS PROTEIN COBD >gi|7447320|pir||G69416
cobalamin biosynthesis protein (cbiB) homolog -
Archaeoglobus fulgidus >gi|2649237|gb|AAB89908.1|
(AE001011) cobalamin biosynthesis protein (cbiB)
[Archaeoglobus fulgidus]
Length = 290
Score = 232 bits (586), Expect = 3e-60
Identities = 131/286 (45%), Positives = 177/286 (61%), Gaps = 8/286 (2%)
Query: 4 LILLGLALIWDLLLGEPPAKIHPVVWFGKIAGFLDNRWRRRGKIGFLAGAFVTFIIVALA 63
+++L L+ D +GEPPA +HPVVW+GK+ L+ R+ + GAF I++ A
Sbjct: 5 VVVLLTTLMLDAAVGEPPALLHPVVWYGKLISLLERAKFRKMLVEIFYGAFCCLIVITFA 64
Query: 64 FFLSLIPSYLTFPLDYLLAIYLLKSSFAIRSLYEHVARTVTEDIEEKRKTVSMIVSRDVK 123
LSL+P +PL++L A+YLL SS +++S+ H V ++ RK V MIVSR+ +
Sbjct: 65 LILSLLP--FPYPLNFLWAVYLLFSSISVKSMVNHARVCVESGVD--RKAVQMIVSRNTE 120
Query: 124 VLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNTLDAMFGYRDERYEY 183
L L SA IES+AEN D VVAPLFYF +FG+ GA+VYRAVNT DAM GYR RYE
Sbjct: 121 ELSEEQLCSAVIESVAENYVDGVVAPLFYFSIFGVAGAVVYRAVNTCDAMVGYRKGRYEA 180
Query: 184 FGKFPARLDDILNFIPARLTVLLYLPFGVKVLKYYKLARFKINSDKPIAAMSAVLGVWLE 243
FGKF ARLDDILN+IPARL++L + Y K+N IAAMS +LGV LE
Sbjct: 181 FGKFAARLDDILNYIPARLSLLFFELLKRGAFSYGLKRNVKLNG-CAIAAMSYLLGVKLE 239
Query: 244 KPGAYRFPGREPRDEDIKRALDVY---KLVVAEYLSIVFVLKVVQL 286
KPG Y PG EP DI+RA+ + ++ + +I +++V L
Sbjct: 240 KPGYYSLPGIEPSAADIERAIKAFVRLTVIAVIFTTIAVSIRIVLL 285
>sp|Q58710|COBD_METJA PROBABLE COBALAMIN BIOSYNTHESIS PROTEIN COBD
>gi|2127814|pir||A64464 cobalamin biosynthesis protein D
homolog - Methanococcus jannaschii
>gi|1591953|gb|AAB99321.1| (U67571) cobalamin
biosynthesis protein B (cbiB) [Methanococcus jannaschii]
Length = 307
Score = 202 bits (509), Expect = 4e-51
Identities = 122/303 (40%), Positives = 181/303 (59%), Gaps = 28/303 (9%)
Query: 1 MNPLILLGLALIWDLLLGEPPAKIHPVVWFGKIAGFLDNRWR----RRGKIGFLAGAFVT 56
+NP+IL LA+I+D ++GE P IHP VW GK+ FL+N ++ + FL G+ T
Sbjct: 2 LNPIILF-LAIIFDRIIGELPESIHPTVWIGKLIAFLENIFKSTNCKNKYRDFLFGSLTT 60
Query: 57 FIIV----ALAFFLSLIPSYLTFPLDYLLAIYLLKSSFAIRSLYEHVARTV----TEDIE 108
FI + +AFF+ L FPL+Y++ +LL ++ +SL+E + + D+E
Sbjct: 61 FITLLVVGVIAFFVDKCIMLLPFPLNYIIYGFLLSTTIGYKSLFEFCKKPIEYIKNGDLE 120
Query: 109 EKRKTVSMIVSRDVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVN 168
RK V IVSRD LD H+ SAA+ESL+EN+ DS++ LFY + FGLPGA VYRA+N
Sbjct: 121 GARKAVQHIVSRDASKLDKEHVLSAAVESLSENITDSIIGALFYAIFFGLPGAFVYRAIN 180
Query: 169 TLDAMFGYRDERYEYFGKFPARLDDILNFIPARLTVLLYL---PF---GVKVLKYYKLAR 222
TLDAM GY++E+Y ++GK ARLDDI NFIP+R+ +L + PF VK Y L
Sbjct: 181 TLDAMIGYKNEKYLWYGKLAARLDDIANFIPSRIAGILLIITAPFYKGDVKKAIYGFLKE 240
Query: 223 F----KINSDKPIAAMSAVLGVWLEKPGAYRFPGREPRDEDIKRALDVYKLVVAEYLSIV 278
NS +A ++ L + LEK G Y+ + D++++L+ +K V +Y +V
Sbjct: 241 ANKVPSPNSGYTMATLANALNITLEKIGYYKLGSGK---IDVEKSLNAFKAV--DYTVVV 295
Query: 279 FVL 281
F++
Sbjct: 296 FLI 298
>sp|O27460|COBD_METTH PROBABLE COBALAMIN BIOSYNTHESIS PROTEIN COBD
>gi|7447313|pir||F69054 cobalamin biosynthesis protein B
- Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622521|gb|AAB85886.1| (AE000903) cobalamin
biosynthesis protein B [Methanobacterium
thermoautotrophicum]
Length = 297
Score = 184 bits (463), Expect = 9e-46
Identities = 119/285 (41%), Positives = 163/285 (56%), Gaps = 24/285 (8%)
Query: 1 MNPLILLGLALIWDLLLGEPPAKIHPVVWFGKIAGFLDNRWRRRGKIGFLAGAFVTFIIV 60
M+ + +L LA+I DLL+GEPP ++HPVVW G W R + I V
Sbjct: 1 MSEVSVLLLAVILDLLIGEPPHRLHPVVWMGSAV-----EWMRNILGNSRISGIILTIAV 55
Query: 61 ALAFFLSL-IPSYLTFPLDYLLAIYLLKSSFAIRSLYE---HVARTVTEDIEEKRKTVSM 116
A F L L + ++L PL+ +++ LL + +IR L V ++ EDIE+ R+ +SM
Sbjct: 56 AAPFTLPLFLINHLQDPLNLIISSILLSAVISIRMLVTSALEVGGSLKEDIEDARRKLSM 115
Query: 117 IVSRDVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNTLDAMFGY 176
+VSRD L + SAAIE+L EN+ DSV AP+FYF+L GLPGA +YR VNTLDAM GY
Sbjct: 116 LVSRDTTSLSDEQITSAAIETLTENITDSVTAPIFYFILLGLPGAFLYRVVNTLDAMVGY 175
Query: 177 RDERYEYFGKFPARLDDILNFIPARLTVLLYLPFGVKVLKYYKLARFKI----------- 225
D G FPARLDDILN+IP+R+T +L +P + + ++ F+I
Sbjct: 176 LDSENRDIGWFPARLDDILNYIPSRITGVLMVPAALLLGMNWR-GSFRILLRDARRTPSP 234
Query: 226 NSDKPIAAMSAVLGVWLEKPGAYRFPGREPRDE-DIKRALDVYKL 269
NS +AA + L V LEKPG Y +P D D ++ LD KL
Sbjct: 235 NSGFTMAAAAGALSVQLEKPGVYVL--GDPCDGLDNEKLLDAVKL 277
>gb|AAK43329.1| Cobalamin biosynthesis protein B (cbiB) [Sulfolobus solfataricus]
Length = 305
Score = 169 bits (423), Expect = 4e-41
Identities = 105/288 (36%), Positives = 162/288 (55%), Gaps = 20/288 (6%)
Query: 4 LILLGLALIWDLLLGEPPAKIHPVVWFGKIAGFLDNRWRRR--GKIGFLAGAFVTFIIVA 61
L +L LALIWDL + EPP IHPVVW GKI+ L ++ G I ++ +I
Sbjct: 2 LFILALALIWDLTISEPPIYIHPVVWTGKISEILIKPYKGYFYGVILWILSVLPPLLIFV 61
Query: 62 LAFFLSLIPSYLTFPLDYLLAIYLLKSSFAIRSLYEHVARTVTEDIEEKRKTVSMIVSRD 121
++ IP YL ++ + LK++F+I+ LY+ V + D ++ R IV RD
Sbjct: 62 YLPIVAEIPIYLKI----IILTFSLKTTFSIKMLYDIVTKGSRLD-DQARYYAQQIVRRD 116
Query: 122 VKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNTLDAMFGYRDERY 181
+ + H+ SA IESL E+ D + +P+F+F++FGL GAM+ R NT+D+M GY+
Sbjct: 117 LSKSEKGHIASALIESLFESTVDGITSPIFWFLIFGLIGAMLQRLANTMDSMVGYKTPEL 176
Query: 182 EYFGKFPARLDDILNFIPARLTVLLYLPFGV----------KVLKYYKLARFKINSDKPI 231
G F A++D ILN+IPARLT ++ L G+ K L+ K+ +N+ PI
Sbjct: 177 RKEGWFSAKIDTILNYIPARLTGMIMLIAGLILGLDVKQGWKALREAKME--SVNAKYPI 234
Query: 232 AAMSAVLGVWLEKPGAYRFP-GREPRDEDIKRALDVYKLVVAEYLSIV 278
A + +L V LEK G Y+ G P ++DI++AL ++KL + Y ++
Sbjct: 235 AIAAGLLNVSLEKVGHYKVGFGNLPCEDDIEKALKLFKLSLILYFLVI 282
>emb|CAC11224.1| (AL445063) COBYRIC ACID SYNTHASE related protein [Thermoplasma
acidophilum]
Length = 304
Score = 167 bits (418), Expect = 2e-40
Identities = 104/299 (34%), Positives = 175/299 (57%), Gaps = 22/299 (7%)
Query: 4 LILLGLALIWDLLLGEPPAKIHPVVWFGKIAGFLDNRWRRRGKIGFLAGAFVTFIIV--A 61
+IL+G A+ D++ GEP IHPVV+ GK++ ++ +R F +IV A
Sbjct: 3 IILIG-AIAIDIIFGEPKEYIHPVVFSGKVSKRIETYFRHHDNRIVYGSIFAVAVIVITA 61
Query: 62 LAFFLSLIPSYLTFPLDYLLAIYLLKSSFAIRSLYEHVARTVTE-----DIEEKRKTVSM 116
+ +FL++ S + ++++ +LK++F+I ++ +H+ R V E +I + R +S
Sbjct: 62 IPYFLAIYVSSFVLVIYVIVSMVILKTTFSISAMGDHI-RLVVESLKNGNISDARVYLSR 120
Query: 117 IVSRDVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNTLDAMFGY 176
+V RD L+ ++SAAIE++AE L D + PLF+F+ G+PGA V R +NTLD+M GY
Sbjct: 121 VVRRDTSNLNENEISSAAIETIAEGLVDGYMTPLFFFIFLGIPGAFVARIINTLDSMCGY 180
Query: 177 RDERYEYFGKFPARLDDILNFIPARLTVLLYLPFGVKVLKYYK--------LARF-KINS 227
+D FG+F A +D ++N+IPARL+ ++ F VL Y ++RF +N+
Sbjct: 181 KDRENFEFGRFSAFMDTVINYIPARLS-WFFIGFSADVLNYRHKVISPRKYVSRFDSVNA 239
Query: 228 DKPIAAMSAVLGVWLEKPGAY--RFPGREPRDEDIKRALDVYKLVVAEYLSIVFVLKVV 284
PI+ M+ L + LEK G+Y G +P DI+R++ V+ + V Y +I+FVL ++
Sbjct: 240 GWPISTMACALNLRLEKRGSYIVNDEGYQPSVRDIERSMHVFYVAVYSY-TIIFVLPLL 297
>sp|Q52683|COBD_RHOCA COBALAMIN BIOSYNTHESIS PROTEIN COBD >gi|7447319|pir||T03524 cobD
protein - Rhodobacter capsulatus
>gi|3128325|gb|AAC16177.1| (AF010496) CobD protein
[Rhodobacter capsulatus]
Length = 314
Score = 152 bits (381), Expect = 4e-36
Identities = 105/311 (33%), Positives = 157/311 (49%), Gaps = 28/311 (9%)
Query: 1 MNPLILLGLALIWDLLLGEPPAKI----HPVVWFGKIAGFLDNRWRRRGKIGFLAGAFVT 56
MN ++ +A+ DL LG P A HPV W G + L+ W +G++ L G V
Sbjct: 1 MNFAAMMVVAIGIDLALGWPDALYKRIGHPVTWIGALIARLEKGWNFKGRLRRLRGVLVA 60
Query: 57 FIIVALAFFLSLIPSYLTFPLDY---LLAIYLLKSSFAIRSLYEHVART----VTEDIEE 109
++ ++L L P + L+ L A+RS+++HVA + D+
Sbjct: 61 LAVIGTTVVIALAVQ-LWLPAGWPGVLIGGILAWPFVALRSMHDHVAAVAKPLIAGDLPG 119
Query: 110 KRKTVSMIVSRDVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNT 169
R+ VSMIV RD LD + AA+ESLAEN +D +VAPLF+ + GLPG Y+A+NT
Sbjct: 120 ARQAVSMIVGRDPSQLDQPGVARAALESLAENSSDGIVAPLFWGCVAGLPGIAGYKAINT 179
Query: 170 LDAMFGYRDERYEYFGKFPARLDDILNFIPARLTVLLYL------PFGVKVLKYYKLARF 223
LD+M G+R +RYE FG AR+DD++N IPARLT L + + V+ +
Sbjct: 180 LDSMIGHRTDRYEEFGWASARIDDLVNLIPARLTGLFFALASPCRARALAVMARDARSHR 239
Query: 224 KINSDKPIAAMSAVLGVWLEKPGAY----------RFPGREPRDEDIKRALDVYKLVVAE 273
N+ P AAM+ L V L P Y +PR D+ R L +Y+ +A
Sbjct: 240 SPNAGWPEAAMAGALAVRLSGPRIYADRVANEPWLNGTAPDPRPADLARGLALYRRAMAG 299
Query: 274 YLSIVFVLKVV 284
++ ++ V+
Sbjct: 300 MTLVIGLVAVL 310
>pir||S52223 hypothetical protein 945 - Rhodobacter capsulatus
>gi|609232|emb|CAA86581.1| (Z46611) (=ORF945)
[Rhodobacter capsulatus]
Length = 314
Score = 151 bits (378), Expect = 8e-36
Identities = 104/311 (33%), Positives = 157/311 (50%), Gaps = 28/311 (9%)
Query: 1 MNPLILLGLALIWDLLLGEPPAKI----HPVVWFGKIAGFLDNRWRRRGKIGFLAGAFVT 56
MN ++ +A+ DL LG P A HPV W ++ L+ W +G++ L G V
Sbjct: 1 MNFAAMMVVAIGIDLALGWPDALYKRIGHPVTWIARLIARLEKGWNFKGRLRRLRGVLVA 60
Query: 57 FIIVALAFFLSLIPSYLTFPLDY---LLAIYLLKSSFAIRSLYEHVART----VTEDIEE 109
++ ++L L P + L+ L A+RS+++HVA + D+
Sbjct: 61 LAVIGTTVVIALAVQ-LWLPAGWPGVLIGGILAWPFVALRSMHDHVAAVAKPLIAGDLPG 119
Query: 110 KRKTVSMIVSRDVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNT 169
R+ VSMIV RD LD + AA+ESLAEN +D +VAPLF+ + GLPG Y+A+NT
Sbjct: 120 ARQAVSMIVGRDPSQLDQPGVARAALESLAENSSDGIVAPLFWGCVAGLPGIAGYKAINT 179
Query: 170 LDAMFGYRDERYEYFGKFPARLDDILNFIPARLTVLLYL------PFGVKVLKYYKLARF 223
LD+M G+R +RYE FG AR+DD++N IPARLT L + + V+ +
Sbjct: 180 LDSMIGHRTDRYEEFGWASARIDDLVNLIPARLTGLFFALASPCRARALAVMARDARSHR 239
Query: 224 KINSDKPIAAMSAVLGVWLEKPGAY----------RFPGREPRDEDIKRALDVYKLVVAE 273
N+ P AAM+ L V L P Y +PR D+ R L +Y+ +A
Sbjct: 240 SPNAGWPEAAMAGALAVRLSGPRIYADRVANEPWLNGTAPDPRPADLARGLALYRRAMAG 299
Query: 274 YLSIVFVLKVV 284
++ ++ V+
Sbjct: 300 MTLVIGLVAVL 310
>emb|CAB40735.1| (AJ011317) CobD protein [Methylobacterium sp. CM4]
Length = 330
Score = 139 bits (347), Expect = 4e-32
Identities = 112/313 (35%), Positives = 152/313 (47%), Gaps = 36/313 (11%)
Query: 4 LILLGLALIWDLLLGEPPAKI----HPVVWFGKIAGFLDNRWRRRGKIGF--LAGAFVTF 57
LI+L LAL+ + G P A HPV W G++ LD R RG+ G L G
Sbjct: 13 LIILALALLIEAAAGYPDALYRALGHPVTWIGRLIAALD-RGLNRGEPGARRLKGVLALL 71
Query: 58 IIVALA----FFLSLIPSYLTFPLDYLLAIYLLKSSFAIRSLYEHVARTVT----EDIEE 109
+++A A L+ + L +LA L + A RSL +HV R E +
Sbjct: 72 VLLAAATGAGLALTALAGLAGPVLGLVLAALLCATLPAQRSLDQHVIRVAAALRREGLPA 131
Query: 110 KRKTVSMIVSRDVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNT 169
R+ VSMIV RD + LD A + AAIESLAEN +D +VAP F+ L GLPG ++Y+A NT
Sbjct: 132 GRRAVSMIVGRDPETLDEAAVCRAAIESLAENFSDGIVAPAFWIGLGGLPGGLLYKAANT 191
Query: 170 LDAMFGYRDERYEYFGKFPARLDDILNFIPARLTVLLY-----LPFGVKVLKYYKLARFK 224
D+M G+R R+ FG AR DD++N +RLT LL L G + R
Sbjct: 192 ADSMIGHRTPRHGAFGWAAARFDDLINLPASRLTALLIMAAARLTKGASARGAWAAVRRD 251
Query: 225 I------NSDKPIAAMSAVLGVWLEKPGAY---------RFPGR-EPRDEDIKRALDVYK 268
N+ P AAM+ LG+ L P Y GR E EDI+RA+ +Y+
Sbjct: 252 AGRHRSPNAGWPEAAMAGALGLRLAGPRVYGGERVTDSWMGDGRAEAGPEDIERAIRIYR 311
Query: 269 LVVAEYLSIVFVL 281
A + +L
Sbjct: 312 TACALLFGLAAIL 324
>dbj|BAB05307.1| (AP001512) cobalamin biosynthesis [Bacillus halodurans]
Length = 319
Score = 137 bits (342), Expect = 1e-31
Identities = 102/306 (33%), Positives = 155/306 (50%), Gaps = 28/306 (9%)
Query: 4 LILLGLALIWDLLLGEPPAKIHPVVWFGKIAGFLDNRW---RRRGKIGFLAGAFVTFIIV 60
+I + A I D LG+P HPVV GK+ + + RW R R + G L V I+
Sbjct: 6 VIAIVSAFILDKWLGDPKWLPHPVVGMGKLITYFERRWNCGRWRREKGVLLLLTVLLIVT 65
Query: 61 ALAFFLSLIPSYLTFPLDYLLAIYLLKSSFAIRSLYE---HVARTV-TEDIEEKRKTVSM 116
AL+ L + + L ++ L+ S+ A + L E VAR + T ++ E R+ +S
Sbjct: 66 ALSLALVWLSYQVHLLLGVIVEALLIASTIAAKGLKEAAEEVARPLATRNLLEARRKLSY 125
Query: 117 IVSRDVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNTLDAMFGY 176
IV RD LD + AIE++AEN +D V APLFY ++ G P A++YRA NT D+M GY
Sbjct: 126 IVGRDTDQLDEKEIARGAIETVAENTSDGVTAPLFYALIGGAPLALLYRATNTCDSMVGY 185
Query: 177 RDERYEYFGKFPARLDDILNFIPARLTVLLYL---------PFG--VKVLKYYKLARFKI 225
++ERY FG A+ DD+LN++P+R+T +L L P G +K+L
Sbjct: 186 KNERYRDFGWASAKFDDVLNWVPSRITGVLMLLLHRKRRQAPLGQSLKMLAREAKKHPSP 245
Query: 226 NSDKPIAAMSAVLGVWLEKPGAYR----------FPGREPRDEDIKRALDVYKLVVAEYL 275
NS AAM+ +L V L Y+ + + +DI ++ + V +L
Sbjct: 246 NSGWGEAAMALLLHVTLGGTNTYQGMTSERAKMGYGTKAMTAKDIDESIAIMNRTVLGFL 305
Query: 276 SIVFVL 281
+F+L
Sbjct: 306 VFLFLL 311
>sp|P21634|COBD_PSEDE COBALAMIN BIOSYNTHESIS PROTEIN COBD >gi|94951|pir||E36144 cobD
protein - Pseudomonas sp >gi|151149|gb|AAA25776.1|
(M59236) ORF 5 [Pseudomonas denitrificans]
Length = 323
Score = 137 bits (341), Expect = 2e-31
Identities = 99/272 (36%), Positives = 141/272 (51%), Gaps = 28/272 (10%)
Query: 4 LILLGLALIWDLLLGEPP---AKI-HPVVWFGKIAGFLDNRWRRR----GKIGFLAGAFV 55
L++L LAL+ D ++G+P A++ HPVV+FGK GF D R R F +
Sbjct: 6 LLILALALVIDRVVGDPDWLWARVPHPVVFFGKAIGFFDARLNREDLEDSARKFRGVVAI 65
Query: 56 TFIIVALAFFLSLIPSYLTF--PLDYLLAIYLLKSSFAIRSLYEHVARTV----TEDIEE 109
++ A+F L+ PL +LL L+ A +SL +HV R +E
Sbjct: 66 LLLLGISAWFGHLLHRLFAVLGPLGFLLEAVLVAVFLAQKSLADHVRRVAGGLRQGGLEG 125
Query: 110 KRKTVSMIVSRDVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNT 169
R VSMIV RD K LD + AAIESLAEN +D VVAP F++ + GLPG + Y+ +NT
Sbjct: 126 GRAAVSMIVGRDPKTLDEPAVCRAAIESLAENFSDGVVAPAFWYAVAGLPGLLAYKMLNT 185
Query: 170 LDAMFGYRDERYEYFGKFPARLDDILNFIPARLTVLLYLPFGVKVLKYYKLARFKI---- 225
D+M G++ +Y +FG ARLDD+ N ARL++LL + G + + A+ +
Sbjct: 186 ADSMIGHKSPKYLHFGWASARLDDLANLPAARLSILL-ISAGALIHRGASAAKDALTVAL 244
Query: 226 ---------NSDKPIAAMSAVLGVWLEKPGAY 248
NS P AAM+ L + L P Y
Sbjct: 245 RDHGLHRSPNSGWPEAAMAGALDLQLAGPRIY 276
>pir||A83486 cobalamin biosynthetic protein CobD PA1275 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947209|gb|AAG04664.1|AE004557_5 (AE004557)
cobalamin biosynthetic protein CobD [Pseudomonas
aeruginosa]
Length = 312
Score = 135 bits (336), Expect = 7e-31
Identities = 102/304 (33%), Positives = 152/304 (49%), Gaps = 37/304 (12%)
Query: 6 LLG-LALIWDLLLGEPPAKIHPVVWFGKIAGFLDNRWRRRGKIG------------FLAG 52
LLG L ++ D GEP HP+V FG++A L+ R+ R G A
Sbjct: 4 LLGILGVVLDARFGEPQGW-HPLVAFGRLADRLERRFNRSRLAGEADPGVGWRSHGVTAW 62
Query: 53 AFVTFIIVALAFFLSLIPSYLTFPLDYLLAIYLLKSSFAIRSLYEHVARTVTE----DIE 108
+ LA+ L+ +P L +L+ L ++ +RSL EH D++
Sbjct: 63 VLAVLPLTLLAWALAELPY-----LGWLVQALALYAALGLRSLGEHAEPVALALRAGDLD 117
Query: 109 EKRKTVSMIVSRDVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVN 168
E R+ V +VSRD + LD A + AA ES+ EN +D+V A LF+F + G PG ++YR N
Sbjct: 118 EARRRVGYLVSRDTRELDQAGVARAATESVLENGSDAVYAALFWFAVAGAPGVVLYRLSN 177
Query: 169 TLDAMFGYRDERYEYFGKFPARLDDILNFIPARLTVLLYLPFG-----VKVLKYYKLARF 223
TLDAM+GYR+ R+E FG A++DDILN++PARL L Y G ++ +
Sbjct: 178 TLDAMWGYRNARFERFGWAAAKIDDILNYLPARLVALTYALLGDTRQALRCWREQAPQWD 237
Query: 224 KINSDKPIAAMSAVLGVWLEKPGAYR---------FPGREPRDEDIKRALDVYKLVVAEY 274
N+ +AA + LGV+L Y G +P+ DI RAL + + V +
Sbjct: 238 SPNAGPVMAAGAGALGVFLGGAAIYHGELHQRPLLGSGPQPQGRDIYRALALVRQGVLLW 297
Query: 275 LSIV 278
L ++
Sbjct: 298 LLVL 301
>gi|10957439 cobalamin biosynthesis protein CobD, putative [Deinococcus
radiodurans] >gi|7473449|pir||B75619 probable cobalamin
biosynthesis protein CobD - Deinococcus radiodurans
(strain R1) >gi|6460868|gb|AAF12572.1|AE001826_41
(AE001826) cobalamin biosynthesis protein CobD, putative
[Deinococcus radiodurans]
Length = 300
Score = 127 bits (317), Expect = 1e-28
Identities = 102/272 (37%), Positives = 135/272 (49%), Gaps = 19/272 (6%)
Query: 5 ILLGLALIWDLLLGEPPAKIHPVVWFGKIAGFLDNRW-RRRGKIGFLAGAFVTFIIVALA 63
+LL LAL LGEPPA HPV++ G + W + K F GA AL
Sbjct: 8 LLLALALD---TLGEPPAYFHPVIYMGNYLRWAQTHWCGKTAKQQFTQGAAGW----ALG 60
Query: 64 FFLSLIPSYLTFPLDYLLAIYLLKSSFAIRSLYEHVARTVTE----DIEEKRKTVSM-IV 118
L+ + L + + LLK A ++L++ VA D+ E R+ ++ +V
Sbjct: 61 AGLAAGAGWTASGLPWWVQGALLKPLLARKALFDAVAEVAGALEQGDVPEARRLLAWHLV 120
Query: 119 SRDVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNTLDAMFGYRD 178
SRD L A + AAIESLAENL+DSVVAPL + GLP A YR NT DAM+GYR
Sbjct: 121 SRDTSQLTAAEVAGAAIESLAENLSDSVVAPLLAYRAGGLPLAAAYRLTNTADAMWGYRT 180
Query: 179 ERYEYFGKFPARLDDILNFIPARLTVLLYLPF-GVKVLKYYKLAR---FKINSDKPIAAM 234
E GK A+ DD+ N PARLT L L G + + + R N+ P++A
Sbjct: 181 PELEDAGKAAAKADDLFNLAPARLTALCTLMVSGSQSWRVWVRDRRNPASPNAGHPMSAF 240
Query: 235 SAVLGVWLEKPGAY--RFPGREPRDEDIKRAL 264
+ LGV L+K G Y G P E + AL
Sbjct: 241 AGALGVRLDKRGVYVLNAAGAAPGPEHLAPAL 272
>sp|Q05600|CBIB_SALTY CBIB PROTEIN >gi|154421|gb|AAA27253.1| (L12006) putative
[Salmonella typhimurium]
Length = 319
Score = 126 bits (314), Expect = 3e-28
Identities = 86/262 (32%), Positives = 136/262 (51%), Gaps = 23/262 (8%)
Query: 9 LALIWDLLLGEPPAKIHPVVWFGKIAGFLDNRWRRR--GKIGFLAGAFVTFIIVA----- 61
+A + D ++G+P HPV W G++ F+ RR G G V +++V
Sbjct: 8 IAWVLDFIIGDPQHWPHPVRWIGRLITFVQRIVRRYCPGDKALRIGGGVMWVVVVGATWG 67
Query: 62 LAFFLSLIPSYLTFPLDYLLAIYLLKSSFAIRSLYEHVARTVTE-----DIEEKRKTVSM 116
+A+ + + + + + ++++ ++ A RSL H A+ V D+ E R +S
Sbjct: 68 VAWGVLALAQRIHPWFGWSVEVWMIFTTLAGRSL-AHAAQEVERPLRKNDLAESRIKLSW 126
Query: 117 IVSRDVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNTLDAMFGY 176
IV RD L A +N A +E++AEN D ++APLF+ L G P AM Y+AVNTLD+M GY
Sbjct: 127 IVGRDTSQLQPAQINRAVVETVAENTVDGIIAPLFFLFLGGAPLAMAYKAVNTLDSMVGY 186
Query: 177 RDERYEYFGKFPARLDDILNFIPARLT-VLLYLPFGVKVLKYYKLARF----KINSDKPI 231
+ E+Y G AR+DD+ N++PARL+ +LL + G+ L ++ R + N P
Sbjct: 187 KHEKYRAIGMVSARMDDVANYLPARLSWLLLGIAAGLCRLSGWRALRIGWRDRYNHSSPN 246
Query: 232 AAMS-----AVLGVWLEKPGAY 248
A S LG+ L P Y
Sbjct: 247 CAWSEACVAGALGIQLGGPNNY 268
>gb|AAG19854.1| (AE005070) Vng1578h [Halobacterium sp. NRC-1]
Length = 308
Score = 116 bits (287), Expect = 4e-25
Identities = 88/262 (33%), Positives = 127/262 (47%), Gaps = 23/262 (8%)
Query: 5 ILLGLALIWDLLLGEPPAKIHPVVWFGKIAGFLDNRWRRRGKIGFLAGAFVTFIIVALAF 64
+ +G+AL D + EPPA HPV WFG+ G +D W R +G LA + A +
Sbjct: 9 VAVGVAL--DAAIAEPPAGCHPVAWFGRAVGVVDRPWTRPLAVGALAAIALPLAAAATVW 66
Query: 65 FLSLIPSYLTFPLDYLLAIYLLKSSFAIRSLYEH----VARTVTED-IEEKRKTVSMIVS 119
+ ++ + ++A ++ + + R L +A T TE+ ++ R+ + +
Sbjct: 67 AAVTVATWGSALAGAVVAGLVVFVTTSRRMLLAEASGVIAATRTENSLDAARRRLRALAG 126
Query: 120 RDVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFML--------FGLPGAMVYRAVNTLD 171
RD L L SAA+ES AENL D +VAPL F + G A +AVNTLD
Sbjct: 127 RDPDALSAGELRSAAVESTAENLADGLVAPLAAFAVGAAVVSLPVGAAAAAWVKAVNTLD 186
Query: 172 AMFGYRDERYEYFGKFPARLDDILNFIPARLTVLLY-----LPFGVKVLKYYKLARFKIN 226
+M GYR +R G ARLDD + ++PARL +L P V A N
Sbjct: 187 SMLGYRSKR---VGTASARLDDAVMWVPARLAAVLIAATARAPAAVSRAAADAGAPPSPN 243
Query: 227 SDKPIAAMSAVLGVWLEKPGAY 248
S P+A ++AVL L KPG Y
Sbjct: 244 SGWPMATLAAVLDCRLVKPGVY 265
>sp|P74475|COBD_SYNY3 COBALAMIN BIOSYNTHESIS PROTEIN COBD >gi|7447314|pir||S76447
hypothetical protein - Synechocystis sp. (strain PCC
6803) >gi|1653664|dbj|BAA18576.1| (D90915) CbiB protein
[Synechocystis sp.]
Length = 342
Score = 106 bits (263), Expect = 3e-22
Identities = 86/271 (31%), Positives = 134/271 (48%), Gaps = 26/271 (9%)
Query: 4 LILLGLALIWDLLLGEPPAKIHPVVWFGKIAGFLDNRWRRR---GKIGFLAGAFVTFIIV 60
+I+LG + + D LLG+P + HPV + G + F R+ L G F+ I+
Sbjct: 14 VIILGGSALLDFLLGDPKSWRHPVEFIGSVINFASQLIIRKVNDKNSRRLWGIFLGLKII 73
Query: 61 ALAFFLSLIPSYLTFPLDYLLAIYL----LKSSFAIRSLYEHVARTVTE-----DIEEKR 111
+ FL+ + YL + +LA+ + + S FA SL + A++V E D+ R
Sbjct: 74 ISSGFLAWLIVYLAEKVSPVLAVIIQIIGVASCFAGHSLAQ-AAQSVIEPLKAGDLPTAR 132
Query: 112 KTVSMIVSRDVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGL-------PGAMVY 164
+ +++ V RD L + A +ES+AEN D V +PLFY +L L P A+ Y
Sbjct: 133 QKLALFVGRDTNNLSEREILRATVESVAENTVDGVTSPLFYALLGILFPFVGPWPLAIAY 192
Query: 165 RAVNTLDAMFGYRDERYEYFGKFPARLDDILNFIPARLTVLLYLPFGVKVLKYYKLARF- 223
+A +TLD+M GY+ E Y G F ARL+D L ++P RLTV + K + + + R
Sbjct: 193 KAASTLDSMVGYKREPYTDLGWFSARLEDYLTWLPCRLTVFMLAILSGKPKQTWAIVRRD 252
Query: 224 -----KINSDKPIAAMSAVLGVWLEKPGAYR 249
NS A +A+LG+ L Y+
Sbjct: 253 GPLDPSPNSGWSEAIYAAILGIQLGGDNYYQ 283
>sp|Q10518|COBD_MYCTU COBALAMIN BIOSYNTHESIS PROTEIN COBD >gi|7447317|pir||H70777
probable cobD - Mycobacterium tuberculosis (strain
H37RV) >gi|1261938|emb|CAA94658.1| (Z70692) cobD
[Mycobacterium tuberculosis]
Length = 313
Score = 99.5 bits (244), Expect = 4e-20
Identities = 90/298 (30%), Positives = 134/298 (44%), Gaps = 42/298 (14%)
Query: 5 ILLGLALIWDLLLGEPPAKIHPVVWFGKIAGFLDNRWRRRGKIGFLAGAFVTFIIVALAF 64
+L+G L D++ G+P + HPV FG+ A L+ R G++ AGA ++V
Sbjct: 13 VLIGCLL--DVVFGDPK-RGHPVALFGRAAAKLEQITYRDGRV---AGAVHVGLLVGAVG 66
Query: 65 FLSL-----------IPSYLTFPLDYLLAIYLLKSSFAIRSLYEHVARTVTEDIEEKRKT 113
L + + T L L ++ I L E +D+E R+
Sbjct: 67 LLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLER------DDVEAARRL 120
Query: 114 VSMIVSRDVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNTLDAM 173
+ + RD L L AA+ES+AEN D+ V PL + G+P + YRA+NTLD+M
Sbjct: 121 LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM 180
Query: 174 FGYRDERYEYFGKFPARLDDILNFIPARLTVLLYL---------PFG-VKVLKYYKLARF 223
GYR RY FG ARLDD N++ AR T +L + P G V+ +
Sbjct: 181 IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP 240
Query: 224 KINSDKPIAAMSAVLGVWLEKPGAYRF---------PGREPRDEDIKRALDVYKLVVA 272
N+ AA + L V L P Y GR P+ D++RA+ + ++V A
Sbjct: 241 SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQA 298
>emb|CAB59463.1| (AL132644) cobalamin biosynthesis protein [Streptomyces coelicolor
A3(2)]
Length = 327
Score = 92.8 bits (227), Expect = 4e-18
Identities = 74/206 (35%), Positives = 104/206 (49%), Gaps = 17/206 (8%)
Query: 11 LIWDLLLGEPPAKIHPVVWFGKIAGFLDN-RWRRRGKIGFL------AGAFVTFIIVALA 63
L+ DLLLG+P + HPV FG+ AG ++ WR G L GA V A A
Sbjct: 15 LLGDLLLGDP-RRGHPVAAFGRAAGAVERVLWRDHRGWGTLHTVVCAGGAAVLGSAAAHA 73
Query: 64 FFLSLIPSY-LTFPLDYLLA--IYLLKSSFAIRSLYEHVARTVTEDIEEKRKTVSMIVSR 120
S S LT + + L + + AI E D+E R + + R
Sbjct: 74 VRRSSAASVALTAAATWSVVGGTSLAREATAIGRALE------AGDVEAARARLPHLCGR 127
Query: 121 DVKVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNTLDAMFGYRDER 180
D + LD + A +ES+AEN +D+VV L + + G+PG + +RAVNTLDAM G++ R
Sbjct: 128 DPQALDADGIARAVVESVAENTSDAVVGALVWGAVAGVPGLLGFRAVNTLDAMVGHKSPR 187
Query: 181 YEYFGKFPARLDDILNFIPARLTVLL 206
Y +G ARLDD+ + ARLT +L
Sbjct: 188 YRRYGWASARLDDLAGWPGARLTAVL 213
>sp|Q9YAA0|COBD_AERPE PROBABLE COBALAMIN BIOSYNTHESIS PROTEIN COBD
>gi|7447316|pir||A72508 probable cobalamin biosynthesis
protein APE2039 - Aeropyrum pernix (strain K1)
>gi|5105737|dbj|BAA81049.1| (AP000063) 323aa long
hypothetical cobalamin biosynthesis protein [Aeropyrum
pernix]
Length = 323
Score = 92.8 bits (227), Expect = 4e-18
Identities = 74/203 (36%), Positives = 101/203 (49%), Gaps = 15/203 (7%)
Query: 68 LIPSYLTFPLDYLLAI-YLLKSSFAIRSLYEHVART----VTEDIEEKRKTVSMIVSRDV 122
L SYL P + LA+ ++K S +R L + + +E R+ V IV RD+
Sbjct: 85 LAASYLVHPALHTLAVGVIVKLSMPLRLLLDTCIKASRMAAAGRVECSRRLVQGIVRRDL 144
Query: 123 KVLDLAHLNSAAIESLAENLNDSVVAPLFYFMLFGLPGAMVYRAVNTLDAMFGYRDERYE 182
L + SA IES AE+L D +PL Y++L G GA++ R NTLD G++
Sbjct: 145 SGEPLGRVLSACIESTAESLVDGYTSPLTYYILLGPLGALLQRLSNTLDGAVGFKTPLLY 204
Query: 183 YFGKFPARLDDILNFIPARLT---VLLYLPF-GVKVLKYYK-LARF-----KINSDKPIA 232
G F A+ D +LNFIPARLT V L P G L + +AR +N+ PI+
Sbjct: 205 RQGWFSAKADTLLNFIPARLTAVMVALAAPLAGASTLGSLRCIARCARLLESVNAGYPIS 264
Query: 233 AMSAVLGVWLEKPGAYRFPGREP 255
A + L V LEK G Y G P
Sbjct: 265 AFAGALDVRLEKKGFYIVNGGAP 287
>gb|AAG23557.1|AF244608_1 (AF244608) cobalamin biosynthesis protein CobD [Carboxydothermus
hydrogenoformans]
Length = 149
Score = 73.4 bits (177), Expect = 3e-12
Identities = 33/61 (54%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 157 GLPGAMVYRAVNTLDAMFGYRDERYEYFGKFPARLDDILNFIPARLTVLLYLPFGVKVLK 216
GLPG YR VNTLD+M GY+ ERY YFG+ A+LDD+LN++PAR+T +L + +L+
Sbjct: 3 GLPGVWFYRTVNTLDSMVGYKSERYLYFGRIAAKLDDLLNYLPARITGVL-MVLAAFILR 61
Query: 217 Y 217
Y
Sbjct: 62 Y 62
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.146 0.437
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103805003
Number of Sequences: 2977
Number of extensions: 4106562
Number of successful extensions: 14187
Number of sequences better than 1.0e-10: 21
Number of HSP's better than 0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14127
Number of HSP's gapped (non-prelim): 23
length of query: 290
length of database: 189,106,746
effective HSP length: 51
effective length of query: 239
effective length of database: 158,583,909
effective search space: 37901554251
effective search space used: 37901554251
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 165 (68.7 bits)