BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0027 (PAB0027) DE:Hypothetical protein
         (561 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75191 hypothetical protein PAB0027 - Pyrococcus abyssi (st...  1120  0.0
pir||E71223 hypothetical protein PH0048 - Pyrococcus horikoshii ...   903  0.0

>pir||F75191 hypothetical protein PAB0027 - Pyrococcus abyssi (strain Orsay)
           >gi|5457490|emb|CAB48981.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 561
           
 Score = 1120 bits (2865), Expect = 0.0
 Identities = 561/561 (100%), Positives = 561/561 (100%)

Query: 1   MVNKMMSFLKEVEGFKSENVFRDVVEISRYHRIQGSREIVDAAEYVAKRLSEIGIEYEFL 60
           MVNKMMSFLKEVEGFKSENVFRDVVEISRYHRIQGSREIVDAAEYVAKRLSEIGIEYEFL
Sbjct: 1   MVNKMMSFLKEVEGFKSENVFRDVVEISRYHRIQGSREIVDAAEYVAKRLSEIGIEYEFL 60

Query: 61  NDRYDGKRYHLTLPSPIAWELKRGKLEFEDKVLTTNDSPLLVMAHSPSGEAEGEVLPIFK 120
           NDRYDGKRYHLTLPSPIAWELKRGKLEFEDKVLTTNDSPLLVMAHSPSGEAEGEVLPIFK
Sbjct: 61  NDRYDGKRYHLTLPSPIAWELKRGKLEFEDKVLTTNDSPLLVMAHSPSGEAEGEVLPIFK 120

Query: 121 DEDWEKAEGKIVLVGEDWREAYKRANEAGARAFIAYRKGTGRAFPYIGLFLTKKDLEWAR 180
           DEDWEKAEGKIVLVGEDWREAYKRANEAGARAFIAYRKGTGRAFPYIGLFLTKKDLEWAR
Sbjct: 121 DEDWEKAEGKIVLVGEDWREAYKRANEAGARAFIAYRKGTGRAFPYIGLFLTKKDLEWAR 180

Query: 181 IPALTVPETFANELINKAKKGGAKVKVEVETEIKESEVLPVLYAKIGEPPYLLFSAHICH 240
           IPALTVPETFANELINKAKKGGAKVKVEVETEIKESEVLPVLYAKIGEPPYLLFSAHICH
Sbjct: 181 IPALTVPETFANELINKAKKGGAKVKVEVETEIKESEVLPVLYAKIGEPPYLLFSAHICH 240

Query: 241 PRPGANDNASGSAMLIELARVLKGKEGRVGFAFLWIPEYHGTQAFIPKAKLDEIYANINL 300
           PRPGANDNASGSAMLIELARVLKGKEGRVGFAFLWIPEYHGTQAFIPKAKLDEIYANINL
Sbjct: 241 PRPGANDNASGSAMLIELARVLKGKEGRVGFAFLWIPEYHGTQAFIPKAKLDEIYANINL 300

Query: 301 DMVGGSEDRAKSTIMLVRTPLSRFSLLPGVLGTFLQLINSGGKSFSGSPLPRMKLKEYPY 360
           DMVGGSEDRAKSTIMLVRTPLSRFSLLPGVLGTFLQLINSGGKSFSGSPLPRMKLKEYPY
Sbjct: 301 DMVGGSEDRAKSTIMLVRTPLSRFSLLPGVLGTFLQLINSGGKSFSGSPLPRMKLKEYPY 360

Query: 361 EMGSDHDIFNIFGIPGVMPITWPDSYYHTSADTPEKLSLESLEIIGKAVAATAVFLAKAE 420
           EMGSDHDIFNIFGIPGVMPITWPDSYYHTSADTPEKLSLESLEIIGKAVAATAVFLAKAE
Sbjct: 361 EMGSDHDIFNIFGIPGVMPITWPDSYYHTSADTPEKLSLESLEIIGKAVAATAVFLAKAE 420

Query: 421 KEELERVARGFAMKYLGELNLERKIEVAESLVMNGLSRDSKFLGLNVGHEIEEEGSIKWV 480
           KEELERVARGFAMKYLGELNLERKIEVAESLVMNGLSRDSKFLGLNVGHEIEEEGSIKWV
Sbjct: 421 KEELERVARGFAMKYLGELNLERKIEVAESLVMNGLSRDSKFLGLNVGHEIEEEGSIKWV 480

Query: 481 EKGIISLKALEYKNEELAKRYKEITEERMISVHIHEYLMLSEIVEEEKAIKALKDEYGEV 540
           EKGIISLKALEYKNEELAKRYKEITEERMISVHIHEYLMLSEIVEEEKAIKALKDEYGEV
Sbjct: 481 EKGIISLKALEYKNEELAKRYKEITEERMISVHIHEYLMLSEIVEEEKAIKALKDEYGEV 540

Query: 541 KEEKIKEAIKVLKDAGVIKTK 561
           KEEKIKEAIKVLKDAGVIKTK
Sbjct: 541 KEEKIKEAIKVLKDAGVIKTK 561


>pir||E71223 hypothetical protein PH0048 - Pyrococcus horikoshii
           >gi|3256433|dbj|BAA29116.1| (AP000001) 565aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 565
           
 Score =  903 bits (2308), Expect = 0.0
 Identities = 432/556 (77%), Positives = 498/556 (88%), Gaps = 1/556 (0%)

Query: 5   MMSFLKEVEGFKSENVFRDVVEISRYHRIQGSREIVDAAEYVAKRLSEIGIEYEFLNDRY 64
           M  FLK  + F  ENVFRDVVEIS++HRIQGSR+IV A EYVA RL E+GI+Y+FLND Y
Sbjct: 8   MKEFLKAADKFNPENVFRDVVEISKFHRIQGSRDIVKATEYVASRLEELGIDYKFLNDIY 67

Query: 65  DGKRYHLTLPSPIAWELKRGKLEFEDKVLTTNDSPLLVMAHSPSGEAEGEVLPIFKDEDW 124
           DGK YHLTLPSPI WE+  G L+F++K LTT++SPLLVMAHSPSGEA+GEV+PIF++EDW
Sbjct: 68  DGKSYHLTLPSPIGWEIVEGSLKFKEKELTTSNSPLLVMAHSPSGEAKGEVIPIFREEDW 127

Query: 125 EKAEGKIVLVGEDWREAYKRANEAGARAFIAYRKGTGRAFPYIGLFLTKKDLEWARIPAL 184
           EKA+GKIVLVGEDWREAY++ANE GA+AFIAYRKGTG AFPYIGLFLTKKDLEWA+IPAL
Sbjct: 128 EKADGKIVLVGEDWREAYRKANEHGAKAFIAYRKGTGDAFPYIGLFLTKKDLEWAKIPAL 187

Query: 185 TVPETFANELINKAKKGGAKVKVEVETEIKESEVLPVLYAKIGEPPYLLFSAHICHPRPG 244
           TVPE+ ANELI K+KKGG +V+V V+TEIK+ E LP+LYAKIGEPPYLLFSAHICHP+PG
Sbjct: 188 TVPESVANELIEKSKKGGVEVEVSVKTEIKDRETLPLLYAKIGEPPYLLFSAHICHPKPG 247

Query: 245 ANDNASGSAMLIELARVLKGKEGRVGFAFLWIPEYHGTQAFIPKAKLDEIYANINLDMVG 304
           ANDNASGSAMLIELAR+LKG EGR+GFAFLWIPEYHGTQAFIPK  L+EIYANINLDMVG
Sbjct: 248 ANDNASGSAMLIELARILKGNEGRIGFAFLWIPEYHGTQAFIPKVNLNEIYANINLDMVG 307

Query: 305 GSEDRAKSTIMLVRTPLSRFSLLPGVLGTFLQLINSGGKSFSGSPLPRMKLKEYPYEMGS 364
           GSEDR+ STIMLVRTPLSRFSL+PGVL  FL+ +N+ GKSFSGSPLP +K KEYPYEMGS
Sbjct: 308 GSEDRSNSTIMLVRTPLSRFSLVPGVLELFLKEVNAEGKSFSGSPLPSVKFKEYPYEMGS 367

Query: 365 DHDIFNIFGIPGVMPITWPDSYYHTSADTPEKLSLESLEIIGKAVAATAVFLAKAEKEEL 424
           DHDIFN + IPGVMPITWPD YYHTSADTPEKLSL +L IIG+AV AT +F+AKAEKEE+
Sbjct: 368 DHDIFNFYSIPGVMPITWPDRYYHTSADTPEKLSLRTLSIIGRAVVATGLFIAKAEKEEV 427

Query: 425 ERVARGFAMKYLGELNLERKIEVAESLVMNGLSRDSKFLGLNVGHEIEEEGSIKWVEKGI 484
           ERVARGFAMKYLGEL+++RKIEVAESLVMNGLSRDS FLGLNVGHE+E  G +KW EKGI
Sbjct: 428 ERVARGFAMKYLGELSMQRKIEVAESLVMNGLSRDSGFLGLNVGHELESNGWVKWKEKGI 487

Query: 485 ISLKALEYKNEELAKRYKEITEE-RMISVHIHEYLMLSEIVEEEKAIKALKDEYGEVKEE 543
           IS+K LEYKNE +A+R KEI EE RMI+VH+HEYLMLSE+++ EKA+KALKDEYGEVKEE
Sbjct: 488 ISIKGLEYKNESIARRLKEIVEEDRMINVHLHEYLMLSELLDNEKAMKALKDEYGEVKEE 547

Query: 544 KIKEAIKVLKDAGVIK 559
           KI   +++L++A +I+
Sbjct: 548 KIMRGVELLEEAKIIE 563


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.136    0.386 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209715685
Number of Sequences: 2977
Number of extensions: 9324955
Number of successful extensions: 26390
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26387
Number of HSP's gapped (non-prelim): 2
length of query: 561
length of database: 189,106,746
effective HSP length: 59
effective length of query: 502
effective length of database: 153,796,013
effective search space: 77205598526
effective search space used: 77205598526
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 167 (69.5 bits)