BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0032 56930 57319 130 !not a gene!
         (130 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71224 hypothetical protein PH0055 - Pyrococcus horikoshii ...   220  7e-57

>pir||D71224 hypothetical protein PH0055 - Pyrococcus horikoshii
           >gi|3256440|dbj|BAA29123.1| (AP000001) 103aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 103
           
 Score =  220 bits (554), Expect = 7e-57
 Identities = 100/103 (97%), Positives = 100/103 (97%)

Query: 1   MGTLHRLLSPGPTSSPHPRERAPWPLPLLPSGPCGVWGLKGVSTALQPCLPHRAPRGTRT 60
           MGTLHRLLSPGPTSSPHPRERAPWPLPLLPSGPCGVWG KGVSTALQPCLPHRAPRGTRT
Sbjct: 1   MGTLHRLLSPGPTSSPHPRERAPWPLPLLPSGPCGVWGPKGVSTALQPCLPHRAPRGTRT 60

Query: 61  HRSALASGGGFGNRPSGFGPGISAVSGYRGRRTPRPSPPPINY 103
           HRSALAS GGFGNRPSGFGPGISAVSGYRGRRTPRPSPPPI Y
Sbjct: 61  HRSALASRGGFGNRPSGFGPGISAVSGYRGRRTPRPSPPPIMY 103


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.140    0.466 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62807992
Number of Sequences: 2977
Number of extensions: 3166390
Number of successful extensions: 14137
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14136
Number of HSP's gapped (non-prelim): 1
length of query: 130
length of database: 189,106,746
effective HSP length: 45
effective length of query: 85
effective length of database: 162,174,831
effective search space: 13784860635
effective search space used: 13784860635
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)