BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0033 (rps15P) DE:SSU ribosomal protein S15P (rps15P)
(158 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75192 ssu ribosomal protein s15p (rps15p) PAB0033 - Pyroco... 326 1e-88
sp|O57805|RS15_PYRHO 30S RIBOSOMAL PROTEIN S15P/S13E >gi|7440403... 322 1e-87
sp|P54012|RS15_METJA 30S RIBOSOMAL PROTEIN S15P/S13E >gi|2826237... 212 1e-54
pir||D64304 ribosomal protein S13.eR - Methanococcus jannaschii 212 1e-54
sp|Q9YCX3|RS15_AERPE 30S RIBOSOMAL PROTEIN S15P/S13E >gi|7440406... 178 3e-44
sp|O27474|RS15_METTH 30S RIBOSOMAL PROTEIN S15P/S13E >gi|7440404... 172 2e-42
gi|11498407 SSU ribosomal protein S15P (rps15P) [Archaeoglobus f... 166 1e-40
gb|AAK40737.1| SSU ribosomal protein S13E (rpS13E) [Sulfolobus s... 159 1e-38
sp|Q05761|RS13_MAIZE 40S RIBOSOMAL PROTEIN S13 >gi|419802|pir||S... 146 1e-34
dbj|BAA96366.1| (AB043974) cytoplasmic ribosomal protein S13 [Pa... 139 1e-32
dbj|BAA88058.1| (AB031739) cytoplasmic ribosomal protein S13 [Ar... 139 1e-32
sp|P49203|RS13_ARATH 40S RIBOSOMAL PROTEIN S13 138 5e-32
gb|AAF97216.1|AF268611_42 (AF268611) 30S ribosomal protein S15 [... 135 2e-31
sp|P46298|RS13_PEA 40S RIBOSOMAL PROTEIN S13 >gi|480095|pir||S36... 134 4e-31
sp|P52811|RS13_ANOGA 40S RIBOSOMAL PROTEIN S13 >gi|1245447|gb|AA... 134 4e-31
sp|P14015|RS13_BRUPA 40S RIBOSOMAL PROTEIN S13 (17.4K PROTEIN) (... 132 2e-30
pir||T01338 ribosomal protein S13, cytosolic - Arabidopsis thali... 132 2e-30
pir||T47888 ribosomal protein S13-like - Arabidopsis thaliana >g... 132 2e-30
pir||R3KW13 ribosomal protein S13.e, cytosolic - nematode (Brugi... 132 3e-30
emb|CAB64592.1| (AL135958) 40S ribosomal protein S13 [Leishmania... 131 4e-30
gi|4506685 ribosomal protein S13 [Homo sapiens] >gi|11439533|ref... 130 8e-30
sp|P49393|RS13_XENLA 40S RIBOSOMAL PROTEIN S13 >gi|1362685|pir||... 129 2e-29
emb|CAC12257.1| (AL445066) probable 30S ribosomal protein S13 [T... 129 2e-29
sp|P28189|RS13_SCHPO 40S RIBOSOMAL PROTEIN S13 >gi|101074|pir||S... 128 3e-29
gb|AAD26692.1|AF116857_1 (AF116857) 40S ribosomal protein S13 [C... 128 3e-29
sp|P78571|RS13_AGABI 40S RIBOSOMAL PROTEIN S13 >gi|1742935|emb|C... 127 9e-29
gb|AAG13286.1|AF266166_1 (AF266166) ribosomal protein S13 [Gilli... 126 2e-28
sp|Q03334|RS13_DROME 40S RIBOSOMAL PROTEIN S13 >gi|2133715|pir||... 125 2e-28
sp|P51404|RS13_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S13 >gi|1109... 125 2e-28
emb|CAA09748.1| (AJ011706) 40S ribosomal protein S13 [Lumbricus ... 124 5e-28
emb|CAA79496.1| (Z19052) ribosomal protein S17 [Drosophila melan... 123 1e-27
sp|P47772|RS13_ICTPU 40S RIBOSOMAL PROTEIN S13 >gi|1363914|pir||... 122 3e-27
sp|P33192|RS13_CANMA 40S RIBOSOMAL PROTEIN S13 (S15) >gi|1071978... 121 5e-27
gi|6320269 Ribosomal protein S13 (S27a) (YS15); Rps13p [Saccharo... 119 2e-26
gb|AAG19256.1| (AE005021) 30S ribosomal protein S15P; Rps15p [Ha... 111 3e-24
sp|P05762|RS15_HALMA 30S RIBOSOMAL PROTEIN S15P (HMAS15) (HS11) ... 106 2e-22
prf||1202284A protein H-S11,ribosomal [Haloarcula marismortui] 104 6e-22
sp|P27072|RS13_MUSDO 40S RIBOSOMAL PROTEIN S13 >gi|103536|pir||S... 99 2e-20
gb|AAC15854.1| (L05090) ribosomal protein S13 [Homo sapiens] 92 2e-18
gb|AAD05366.1| (U58510) small subunit ribosomal protein S13 [Chl... 88 5e-17
>pir||F75192 ssu ribosomal protein s15p (rps15p) PAB0033 - Pyrococcus abyssi
(strain Orsay) >gi|5457498|emb|CAB48989.1| (AJ248283)
SSU ribosomal protein S15P (rps15P) [Pyrococcus abyssi]
Length = 158
Score = 326 bits (826), Expect = 1e-88
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI
Sbjct: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR
Sbjct: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLVR 158
GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLVR
Sbjct: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLVR 158
>sp|O57805|RS15_PYRHO 30S RIBOSOMAL PROTEIN S15P/S13E >gi|7440403|pir||G71224 probable
40S ribosomal protein S13 - Pyrococcus horikoshii
>gi|3256443|dbj|BAA29126.1| (AP000001) 158aa long
hypothetical 40S ribosomal protein S13 [Pyrococcus
horikoshii]
Length = 158
Score = 322 bits (817), Expect = 1e-87
Identities = 155/158 (98%), Positives = 158/158 (99%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
MARMHARKRGKSGSKRPPRTAPPIWL+YTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI
Sbjct: 1 MARMHARKRGKSGSKRPPRTAPPIWLDYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLI+RAVNLRKHLEQHPKDLHSMR
Sbjct: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMR 120
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLVR 158
GLQLIESKIRRLVKYYKRKGKLP+DWRYDPEQAKLLVR
Sbjct: 121 GLQLIESKIRRLVKYYKRKGKLPRDWRYDPEQAKLLVR 158
>sp|P54012|RS15_METJA 30S RIBOSOMAL PROTEIN S15P/S13E >gi|2826237|gb|AAB98017.1| (U67462)
SSU ribosomal protein S15P (rpsO) [Methanococcus
jannaschii]
Length = 153
Score = 212 bits (535), Expect = 1e-54
Identities = 105/157 (66%), Positives = 123/157 (77%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
MARMHARKRG+SGSKRP R P W++YT E +E LVV+L K+GY +A IG ILRD YGI
Sbjct: 1 MARMHARKRGRSGSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGI 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
P VKL I++I+++HGL P++PEDL+ L++RAVNLRKHLEQHPKDLHS R
Sbjct: 61 PDVKLITGKK-------ISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKR 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
GLQLIESKIRRLVKYYK KG LP DWRY PE A+LLV
Sbjct: 114 GLQLIESKIRRLVKYYKSKGVLPADWRYTPETARLLV 150
>pir||D64304 ribosomal protein S13.eR - Methanococcus jannaschii
Length = 162
Score = 212 bits (535), Expect = 1e-54
Identities = 105/157 (66%), Positives = 123/157 (77%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
MARMHARKRG+SGSKRP R P W++YT E +E LVV+L K+GY +A IG ILRD YGI
Sbjct: 10 MARMHARKRGRSGSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGI 69
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
P VKL I++I+++HGL P++PEDL+ L++RAVNLRKHLEQHPKDLHS R
Sbjct: 70 PDVKLITGKK-------ISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKR 122
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
GLQLIESKIRRLVKYYK KG LP DWRY PE A+LLV
Sbjct: 123 GLQLIESKIRRLVKYYKSKGVLPADWRYTPETARLLV 159
>sp|Q9YCX3|RS15_AERPE 30S RIBOSOMAL PROTEIN S15P/S13E >gi|7440406|pir||D72715 probable
ribosomal protein S13 APE1139 - Aeropyrum pernix
(strain K1) >gi|5104809|dbj|BAA80124.1| (AP000060) 150aa
long hypothetical 30S ribosomal protein S13 [Aeropyrum
pernix]
Length = 150
Score = 178 bits (447), Expect = 3e-44
Identities = 86/151 (56%), Positives = 111/151 (72%), Gaps = 7/151 (4%)
Query: 7 RKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGIPTVKLF 66
R++G+S S RPP PP WL +T E+IE L+ +L K+GY +MIG ILRDQYGIP VK
Sbjct: 5 REKGQSHSTRPPHPQPPQWLVFTPEEIELLIAELAKKGYGPSMIGIILRDQYGIPLVK-- 62
Query: 67 RDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMRGLQLIE 126
P ++ +L + GL P +PEDL+ LI++AVNLR+HL++HPKD H+ +GL +E
Sbjct: 63 -----PILGKGVSEVLREKGLHPPLPEDLLMLIRKAVNLRRHLDEHPKDYHAKKGLIDLE 117
Query: 127 SKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
SKIRRLVKYYKR+G LP DW+YDPE AKLLV
Sbjct: 118 SKIRRLVKYYKRRGVLPPDWKYDPEAAKLLV 148
>sp|O27474|RS15_METTH 30S RIBOSOMAL PROTEIN S15P/S13E >gi|7440404|pir||F69056 ribosomal
protein S15 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622536|gb|AAB85900.1| (AE000904)
ribosomal protein S13 (E.coli S15) [Methanobacterium
thermoautotrophicum]
Length = 134
Score = 172 bits (431), Expect = 2e-42
Identities = 83/136 (61%), Positives = 108/136 (79%), Gaps = 7/136 (5%)
Query: 23 PIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGIPTVKLFRDPDNPNRKLTITRIL 82
P W+EY+ E+IE+L+VKL +EG ST+ IG ILRDQ+GIP+VK L IT+IL
Sbjct: 6 PDWVEYSNEEIEDLIVKLYREGNSTSKIGIILRDQHGIPSVKAVTG-------LKITQIL 58
Query: 83 EKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKL 142
EKH + PE PEDLM LI++AVN+R HL++HPKDLH+ RGLQ++ESKIRRLV+YY R+G L
Sbjct: 59 EKHEMKPEYPEDLMNLIRKAVNIRDHLKEHPKDLHTRRGLQIVESKIRRLVRYYVREGVL 118
Query: 143 PKDWRYDPEQAKLLVR 158
P+ WRYDP++A LLV+
Sbjct: 119 PEGWRYDPQKAALLVK 134
>gi|11498407 SSU ribosomal protein S15P (rps15P) [Archaeoglobus fulgidus]
>gi|6226072|sp|O29457|RS15_ARCFU 30S RIBOSOMAL PROTEIN
S15P/S13E >gi|7440405|pir||A69350 SSU ribosomal protein
S15P (rps15P) homolog - Archaeoglobus fulgidus
>gi|2649805|gb|AAB90437.1| (AE001049) SSU ribosomal
protein S15P (rps15P) [Archaeoglobus fulgidus]
Length = 152
Score = 166 bits (417), Expect = 1e-40
Identities = 83/155 (53%), Positives = 110/155 (70%), Gaps = 7/155 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
MAR+HAR+RGKSGSKR R +PP W++ + E++E V++L EGY +MIG ILRD+YGI
Sbjct: 1 MARIHARRRGKSGSKRIYRDSPPEWVDMSPEEVEKKVLELYNEGYEPSMIGMILRDRYGI 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
P+VK I +IL++HG+ + PEDL LIK+A+ LR HLE H KD H+ R
Sbjct: 61 PSVKQVTGKK-------IQKILKEHGVEIKYPEDLKALIKKALKLRAHLEVHRKDKHNRR 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKL 155
GLQLIE+KI RL YYK KG LP DW+Y+P++ K+
Sbjct: 114 GLQLIEAKIWRLSSYYKEKGVLPADWKYNPDRLKI 148
>gb|AAK40737.1| SSU ribosomal protein S13E (rpS13E) [Sulfolobus solfataricus]
Length = 152
Score = 159 bits (399), Expect = 1e-38
Identities = 80/151 (52%), Positives = 107/151 (69%), Gaps = 7/151 (4%)
Query: 7 RKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGIPTVKLF 66
R +GKS S RP R P W+ T E++E LV +L K GY+ +MIG ILRDQYGIP VK
Sbjct: 5 RAKGKSHSIRPARAGAPKWVRLTREEVEMLVEELAKRGYTPSMIGIILRDQYGIPLVKQI 64
Query: 67 RDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMRGLQLIE 126
+T+ILE+ GLAP+IPEDL LI++AVN+R+H+ ++P+D + +GL+ IE
Sbjct: 65 VGKK-------VTQILEERGLAPQIPEDLFNLIRKAVNVRRHINEYPRDKTAKKGLEEIE 117
Query: 127 SKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
SKIRRL +YYK GKLP++W YDP +A+LLV
Sbjct: 118 SKIRRLTRYYKGIGKLPQEWVYDPAKAELLV 148
>sp|Q05761|RS13_MAIZE 40S RIBOSOMAL PROTEIN S13 >gi|419802|pir||S30146 ribosomal protein
S13, cytosolic - maize >gi|288059|emb|CAA44311.1|
(X62455) cytoplasmatic ribosomal protein S13 [Zea mays]
Length = 151
Score = 146 bits (365), Expect = 1e-34
Identities = 76/157 (48%), Positives = 97/157 (61%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M MH+R +G S S P + PP WL+ D+E ++ K K+G + IG +LRDQ+GI
Sbjct: 1 MGAMHSRGKGISSSALPYKRTPPTWLKTAASDVEEMITKAAKKGQMPSQIGVLLRDQHGI 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
P VK I RIL+ HGLAPEIPEDL FLIK+AV +RKHLE++ KD S
Sbjct: 61 PLVKSVTGSK-------ILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L L+ES+I RL +YYKR KLP W+Y+ A LV
Sbjct: 114 RLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLV 150
>dbj|BAA96366.1| (AB043974) cytoplasmic ribosomal protein S13 [Panax ginseng]
Length = 151
Score = 139 bits (348), Expect = 1e-32
Identities = 74/157 (47%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMH+R +G S S P + PP WL+ T +D+++ + K K+G + + IG ILRD +GI
Sbjct: 1 MGRMHSRGKGISASALPYKRTPPSWLKITPQDVDDNICKFAKKGLTPSQIGVILRDSHGI 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
VK I RIL+ HGLAPEIPEDL LIK+AV +RKHLE++ KD S
Sbjct: 61 AQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L L+ES+I RL +YYK+ KLP W+Y+ A LV
Sbjct: 114 RLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 150
>dbj|BAA88058.1| (AB031739) cytoplasmic ribosomal protein S13 [Arabidopsis thaliana]
Length = 151
Score = 139 bits (348), Expect = 1e-32
Identities = 74/157 (47%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMH+R +G S S P + + P WL+ T +D++ + K K+G + + IG ILRD +GI
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
P VK I RIL+ HGLAPEIPEDL LIK+AV +RKHLE++ KD S
Sbjct: 61 PQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L L+ES+I RL +YYK+ KLP W+Y+ A LV
Sbjct: 114 RLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 150
>sp|P49203|RS13_ARATH 40S RIBOSOMAL PROTEIN S13
Length = 150
Score = 138 bits (343), Expect = 5e-32
Identities = 73/155 (47%), Positives = 97/155 (62%), Gaps = 7/155 (4%)
Query: 3 RMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGIPT 62
RMH+R +G S S P + + P WL+ T +D++ + K K+G + + IG ILRD +GIP
Sbjct: 2 RMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQ 61
Query: 63 VKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMRGL 122
VK I RIL+ HGLAPEIPEDL LIK+AV +RKHLE++ KD S L
Sbjct: 62 VKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRL 114
Query: 123 QLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L+ES+I RL +YYK+ KLP W+Y+ A LV
Sbjct: 115 ILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 149
>gb|AAF97216.1|AF268611_42 (AF268611) 30S ribosomal protein S15 [uncultured marine group II
euryarchaeote 37F11]
Length = 151
Score = 135 bits (337), Expect = 2e-31
Identities = 70/157 (44%), Positives = 102/157 (64%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
MARM+A KRGKSGS +P T P W ++IE+L+++ K+G STA IGTILRD++ +
Sbjct: 1 MARMYASKRGKSGSSKPFMTEAPEWSNKDAKEIESLILQYFKDGMSTAQIGTILRDKHAV 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
P V+L I +L ++ + PEDLM L+++AV + +HL + +DLH+ R
Sbjct: 61 PNVRLVLGK-------RIGAVLSENDESGTYPEDLMNLMRQAVAIIEHLTTNSRDLHNKR 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L+L E+KIRRL YYK +G+L DWRY +Q +L+V
Sbjct: 114 SLELTEAKIRRLGNYYKAEGRLDSDWRYKRDQLRLIV 150
>sp|P46298|RS13_PEA 40S RIBOSOMAL PROTEIN S13 >gi|480095|pir||S36423 ribosomal protein
S13, cytosolic - garden pea >gi|396639|emb|CAA80974.1|
(Z25509) ribosomal protein S13 [Pisum sativum]
Length = 151
Score = 134 bits (335), Expect = 4e-31
Identities = 71/157 (45%), Positives = 96/157 (60%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M R+H++ +G S S P R P WL+ + +D++ + K K+G + + IG ILRD +GI
Sbjct: 1 MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGI 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
VK I RIL+ HGLAPEIPEDL LIK+AV++RKHLE+ KD S
Sbjct: 61 AQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L L+ES+I RL +YYK+ KLP W+Y+ A LV
Sbjct: 114 RLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 150
>sp|P52811|RS13_ANOGA 40S RIBOSOMAL PROTEIN S13 >gi|1245447|gb|AAA93478.1| (U50479)
putative ribosomal protein S13 [Anopheles gambiae]
Length = 151
Score = 134 bits (335), Expect = 4e-31
Identities = 73/157 (46%), Positives = 101/157 (63%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMHA +G S S P R + P WL+ + ED++ + KL K+G + + IG ILRD +G+
Sbjct: 1 MGRMHAPGKGISKSALPYRRSVPSWLKLSAEDVKEQIKKLGKKGMTPSQIGIILRDSHGV 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
V+ N N+ L RI++ GL P+IPEDL FLIK+AV++RKHLE++ KD+ S
Sbjct: 61 AQVRFV----NGNKVL---RIMKAVGLKPDIPEDLYFLIKKAVSIRKHLERNRKDIDSKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L LIES+I RL +YYK K LP +W+Y+ A LV
Sbjct: 114 RLILIESRIHRLARYYKIKAVLPPNWKYESSTASALV 150
>sp|P14015|RS13_BRUPA 40S RIBOSOMAL PROTEIN S13 (17.4K PROTEIN) (S15)
>gi|5950|emb|CAA34603.1| (X16591) 17.4 kDa-protein (AA
1-151) [Brugia pahangi] >gi|156091|gb|AAA51420.1|
(M86643) ribosomal protein S13 [Brugia pahangi]
>gi|162579|gb|AAA30343.1| (M86642) ribosomal protein S13
[Wuchereria bancrofti]
Length = 151
Score = 132 bits (330), Expect = 2e-30
Identities = 73/157 (46%), Positives = 97/157 (61%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMH +G S S P R + P WL+ T E+++ V +L K+G + IG ILRD +G+
Sbjct: 1 MGRMHNPGKGISQSALPYRRSVPTWLKLTSEEVQEQVTRLAKKGLRPSQIGVILRDSHGV 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
V+ R N I RIL+ G+APEIPEDL LIK+AVN+RKHLE++ KD S
Sbjct: 61 AQVR--RVTGNK-----IVRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKY 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L L+ES+I RL +YYK K +LP W+Y+ A LV
Sbjct: 114 RLILVESRIHRLARYYKTKRQLPATWKYESSTASALV 150
>pir||T01338 ribosomal protein S13, cytosolic - Arabidopsis thaliana
>gi|3193323|gb|AAC19305.1| (AF069299) similar to
ribosomal protein S13 (Pfam; S15.hmm, score: 78.35);
identical to Arabidopsis 40S ribosomal protein S13
(fragment) (SW: P49203A) except the first 32 amino acids
are different [Arabidopsis thaliana]
>gi|7267097|emb|CAB80768.1| (AL161471) putative
ribosomal protein S13 [Arabidopsis thaliana]
Length = 150
Score = 132 bits (329), Expect = 2e-30
Identities = 70/146 (47%), Positives = 92/146 (62%), Gaps = 7/146 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMH+R +G S S P + + P WL+ T +D++ + K K+G + + IG ILRD +GI
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
P VK I RIL+ HGLAPEIPEDL LIK+AV +RKHLE++ KD S
Sbjct: 61 PQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDW 146
L L+ES+I RL +YYK+ KLP W
Sbjct: 114 RLILVESRIHRLARYYKKTKKLPPVW 139
>pir||T47888 ribosomal protein S13-like - Arabidopsis thaliana
>gi|7329687|emb|CAB82681.1| (AL162295) ribosomal protein
S13-like [Arabidopsis thaliana]
Length = 150
Score = 132 bits (329), Expect = 2e-30
Identities = 70/146 (47%), Positives = 92/146 (62%), Gaps = 7/146 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMH+R +G S S P + + P WL+ T +D++ + K K+G + + IG ILRD +GI
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
P VK I RIL+ HGLAPEIPEDL LIK+AV +RKHLE++ KD S
Sbjct: 61 PQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDW 146
L L+ES+I RL +YYK+ KLP W
Sbjct: 114 RLILVESRIHRLARYYKKTKKLPPVW 139
>pir||R3KW13 ribosomal protein S13.e, cytosolic - nematode (Brugia pahangi)
>gi|297071|emb|CAA45247.1| (X63714) ribosomal protein
S15 [Brugia pahangi]
Length = 151
Score = 132 bits (328), Expect = 3e-30
Identities = 72/157 (45%), Positives = 96/157 (60%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMH +G S S P R + P WLE T E+++ + +L K+G + IG ILRD +G+
Sbjct: 1 MGRMHNPGKGISQSALPYRRSVPTWLELTSEEVQEQITRLAKKGLRPSQIGVILRDSHGV 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
V+ R N I RIL+ G+APEIPEDL LIK+AVN+RKHLE++ KD S
Sbjct: 61 AQVR--RVTGNK-----IVRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKY 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L L+ES+I L +YYK K +LP W+Y+ A LV
Sbjct: 114 RLILVESRIHHLARYYKTKRQLPATWKYESSTASALV 150
>emb|CAB64592.1| (AL135958) 40S ribosomal protein S13 [Leishmania major]
Length = 151
Score = 131 bits (327), Expect = 4e-30
Identities = 71/157 (45%), Positives = 93/157 (59%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMH RGK+ S P R PP WL+ ++ +V K ++G + IG LRD GI
Sbjct: 1 MVRMHGNGRGKASSALPYRRTPPAWLKIASRNVVKMVCKSSRKGMMPSQIGMELRDSMGI 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
VK + RK I RIL+ +GLAPEIPEDL FL+KRA +RKHLE+H D +
Sbjct: 61 AQVK-----NVTGRK--ILRILKHNGLAPEIPEDLYFLVKRATQMRKHLERHTTDRDTKY 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L L+ES+I RL +YYKR +LP W+Y+ A +V
Sbjct: 114 RLILVESRIHRLARYYKRVKQLPPTWKYESSTASAMV 150
>gi|4506685 ribosomal protein S13 [Homo sapiens] >gi|11439533|ref|XP_006388.1|
ribosomal protein S13 [Homo sapiens]
>gi|417712|sp|Q02546|RS13_HUMAN 40S RIBOSOMAL PROTEIN
S13 >gi|70997|pir||R3RT13 ribosomal protein S13,
cytosolic [validated] - rat >gi|479483|pir||S34109
ribosomal protein S13, cytosolic - human
>gi|57730|emb|CAA37458.1| (X53378) ribosomal protein S13
[Rattus rattus] >gi|307391|gb|AAA60283.1| (L01124)
ribosomal protein S13 [Homo sapiens]
>gi|488417|emb|CAA55821.1| (X79239) ribosomal protein
S13 [Homo sapiens] >gi|1754633|dbj|BAA13528.1| (D88010)
ribosomal protein S13 [Homo sapiens]
Length = 151
Score = 130 bits (324), Expect = 8e-30
Identities = 70/157 (44%), Positives = 96/157 (60%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMHA +G S S P R + P WL+ T +D++ + KL K+G + + IG ILRD +G+
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
V+ I RIL+ GLAP++PEDL LIK+AV +RKHLE++ KD +
Sbjct: 61 AQVRFVTGNK-------ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L LIES+I RL +YYK K LP +W+Y+ A LV
Sbjct: 114 RLILIESRIHRLARYYKTKRVLPPNWKYESSTASALV 150
>sp|P49393|RS13_XENLA 40S RIBOSOMAL PROTEIN S13 >gi|1362685|pir||S57438 ribosomal protein
S13, cytosolic - African clawed frog
>gi|871774|emb|CAA90077.1| (Z49897) orf [Xenopus laevis]
Length = 151
Score = 129 bits (321), Expect = 2e-29
Identities = 69/157 (43%), Positives = 96/157 (60%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMHA +G S S P R + P WL+ T +D++ + KL K+G + + IG ILRD +G+
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
V+ I RIL+ GLAP++PEDL LIK+AV +RKHLE++ KD +
Sbjct: 61 AQVRFVTGNK-------ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L LIES+I RL +YYK + LP +W+Y+ A LV
Sbjct: 114 RLILIESRIHRLARYYKTRRVLPPNWKYESSTASALV 150
>emb|CAC12257.1| (AL445066) probable 30S ribosomal protein S13 [Thermoplasma
acidophilum]
Length = 145
Score = 129 bits (320), Expect = 2e-29
Identities = 68/146 (46%), Positives = 94/146 (63%), Gaps = 8/146 (5%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
MARMH RKRG+SGSK+ P W++Y+ +++ N +V L+K G ++IG LRDQYGI
Sbjct: 1 MARMHTRKRGRSGSKKVYGVQPS-WIQYSKDEVINTIVNLKKSGVPPSVIGIKLRDQYGI 59
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
PTVK + + ++L + GL ++PEDL LIKR N+ KH+E +PKD + R
Sbjct: 60 PTVKAVLG-------MKLGKVLSEKGLKDDVPEDLGNLIKRYNNVAKHVELNPKDQANKR 112
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDW 146
G LI +K+ RLVKYYKR G L + W
Sbjct: 113 GRDLIMAKMLRLVKYYKRTGVLDEKW 138
>sp|P28189|RS13_SCHPO 40S RIBOSOMAL PROTEIN S13 >gi|101074|pir||S26296 40s ribosomal
protein s13 - fission yeast (Schizosaccharomyces pombe)
>gi|5072|emb|CAA47424.1| (X67030) rps13
[Schizosaccharomyces pombe] >gi|2656006|emb|CAB11741.1|
(Z98981) 40s ribosomal protein s13 [Schizosaccharomyces
pombe]
Length = 151
Score = 128 bits (319), Expect = 3e-29
Identities = 67/157 (42%), Positives = 95/157 (59%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMH++ +G + S P +PP W + + + ++K K+G S + IG LRD +GI
Sbjct: 1 MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
P V+ I RIL+ +GLAPE+PEDL LIK+AV++RKHLE++ KD S
Sbjct: 61 PQVRFITGQK-------IMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L LIES+I RL +YY++ G LP W+Y+ A LV
Sbjct: 114 RLILIESRIHRLARYYRKVGALPPTWKYESATASALV 150
>gb|AAD26692.1|AF116857_1 (AF116857) 40S ribosomal protein S13 [Cricetulus griseus]
Length = 151
Score = 128 bits (319), Expect = 3e-29
Identities = 69/157 (43%), Positives = 95/157 (59%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMHA +G S S P R + P WL+ +D++ + KL K+G + + IG ILRD +G+
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLASDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
V+ I RIL+ GLAP++PEDL LIK+AV +RKHLE++ KD +
Sbjct: 61 AQVRFVTGNK-------ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L LIES+I RL +YYK K LP +W+Y+ A LV
Sbjct: 114 RLILIESRIHRLARYYKTKRVLPPNWKYESSTASALV 150
>sp|P78571|RS13_AGABI 40S RIBOSOMAL PROTEIN S13 >gi|1742935|emb|CAA64365.1| (X94704) 40S
ribosomal protein S13 [Agaricus bisporus]
Length = 151
Score = 127 bits (315), Expect = 9e-29
Identities = 69/157 (43%), Positives = 93/157 (58%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMHA +G S S P R PP WL+ T E++ +VKL ++G + + IG LR+ +GI
Sbjct: 1 MGRMHAPGKGISSSALPYRRTPPSWLKTTSEEVVEQIVKLARKGLTPSQIGVTLRNSHGI 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
P V+ I RIL+ GL P IPEDL LIK+AV +RKH+E + KD S
Sbjct: 61 PQVRFVTGNK-------ILRILKSQGLGPSIPEDLWHLIKKAVAVRKHMETNRKDKDSKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L LIES+I RL +YYK K ++P ++YD A L+
Sbjct: 114 RLILIESRIHRLARYYKTKQQIPPTFKYDSATASTLI 150
>gb|AAG13286.1|AF266166_1 (AF266166) ribosomal protein S13 [Gillichthys mirabilis]
Length = 151
Score = 126 bits (313), Expect = 2e-28
Identities = 69/157 (43%), Positives = 94/157 (58%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMHA +G S S P R + P WL+ T +D++ + KL K+G + + IG ILRD +G+
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIFKLAKKGLTPSQIGVILRDSHGV 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
V+ I RIL+ GLAP++PEDL LIK+AV +RKHLE++ KD +
Sbjct: 61 AQVRFVTGNK-------ILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L LIES+I RL +YYK K L +W+Y A LV
Sbjct: 114 RLILIESRIHRLARYYKTKRVLAPNWKYXSSTASALV 150
>sp|Q03334|RS13_DROME 40S RIBOSOMAL PROTEIN S13 >gi|2133715|pir||S70391 ribosomal protein
S13 - fruit fly (Drosophila melanogaster)
>gi|7428665|pir||S33684 ribosomal protein S13.e,
cytosolic - fruit fly (Drosophila melanogaster)
>gi|1107562|emb|CAA62964.1| (X91853) ribosomal protein
S13 [Drosophila melanogaster]
>gi|1107564|emb|CAA62965.1| (X91854) ribosomal protein
S13 [Drosophila melanogaster] >gi|7297390|gb|AAF52649.1|
(AE003621) RpS13 gene product [Drosophila melanogaster]
Length = 151
Score = 125 bits (312), Expect = 2e-28
Identities = 68/157 (43%), Positives = 95/157 (60%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMHA +G S S P R P WL+ +D++ + KL K+G + + IG ILRD +G+
Sbjct: 1 MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
V+ N N+ I RI++ GL P+IPEDL +IK+AV +RKHLE++ KD
Sbjct: 61 AQVRFV----NGNK---ILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L L+ES+I RL +YYK K LP +W+Y+ A LV
Sbjct: 114 RLILVESRIHRLARYYKTKSVLPPNWKYESSTASALV 150
>sp|P51404|RS13_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S13 >gi|1109824|gb|AAB47594.1|
(U41534) Contains similarity to Pfam domain: PF00312
(S15), Score=82.2, E-value=2.5e-22, N=1 [Caenorhabditis
elegans]
Length = 151
Score = 125 bits (312), Expect = 2e-28
Identities = 66/157 (42%), Positives = 95/157 (60%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMH +G + S P R + P W + T E++++ +VK+ K+G + IG ILRD +G+
Sbjct: 1 MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
V+ I RIL+ G+APE+PEDL L+K+AV +RKHLE+ KD+ S
Sbjct: 61 GQVRRLAGNK-------IFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKY 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L L+ES+I RL +YYK K +LP W+Y+ A LV
Sbjct: 114 RLILVESRIHRLARYYKTKRQLPPTWKYESGTAASLV 150
>emb|CAA09748.1| (AJ011706) 40S ribosomal protein S13 [Lumbricus rubellus]
Length = 151
Score = 124 bits (309), Expect = 5e-28
Identities = 69/157 (43%), Positives = 93/157 (58%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMHA +G S S P R + P WL+ +D++ + KL K+G + + IG ILRD +G+
Sbjct: 1 MGRMHAPGKGISQSALPYRRSVPTWLKLGPDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
+ I RIL+ GLAP IPEDL FLIK+AV +RKHLE++ KD S
Sbjct: 61 AQTRHVAGNK-------ILRILKAKGLAPTIPEDLYFLIKKAVAIRKHLERNRKDKDSKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L L+ES+I RL +YYK + LP W+Y+ A LV
Sbjct: 114 RLILVESRIHRLARYYKTRKVLPPVWKYESATASALV 150
>emb|CAA79496.1| (Z19052) ribosomal protein S17 [Drosophila melanogaster]
Length = 151
Score = 123 bits (306), Expect = 1e-27
Identities = 67/157 (42%), Positives = 93/157 (58%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMHA +G S S P R P WL+ +D++ + K +EG + IG ILRD +G+
Sbjct: 1 MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKAGQEGSDSLQIGIILRDSHGV 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
V+ N N+ I RI++ GL P+IPEDL +IK+AV +RKHLE++ KD
Sbjct: 61 AQVRFV----NGNK---ILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L L+ES+I RL +YYK K LP +W+Y+ A LV
Sbjct: 114 RLILVESRIHRLARYYKTKSVLPPNWKYESSTASALV 150
>sp|P47772|RS13_ICTPU 40S RIBOSOMAL PROTEIN S13 >gi|1363914|pir||JC4307 ribosomal protein
S13.e, cytosolic - channel catfish
>gi|699581|gb|AAA91984.1| (U21163) No definition line
found [Ictalurus punctatus]
Length = 151
Score = 122 bits (302), Expect = 3e-27
Identities = 66/157 (42%), Positives = 93/157 (59%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMHA +G S S P R + P WL+ T +D++ + KL K+G + + IG ILRD +G+
Sbjct: 1 MGRMHAPGKGLSQSALPFRRSVPTWLKLTSDDVKEQIFKLAKKGLTPSQIGVILRDSHGV 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
V+ I RIL+ GLAP++PEDL LI + V +RKHLE++ KD +
Sbjct: 61 AQVRFVTGNK-------ILRILKSKGLAPDLPEDLYHLITKDVAVRKHLERNRKDKDAKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L L+ES+I RL +YYK K L +W+Y+ A LV
Sbjct: 114 RLILVESRIHRLARYYKTKRVLAPNWKYESSTASALV 150
>sp|P33192|RS13_CANMA 40S RIBOSOMAL PROTEIN S13 (S15) >gi|1071978|pir||S25374 ribosomal
protein S13.e, cytosolic - yeast (Candida maltosa)
Length = 151
Score = 121 bits (300), Expect = 5e-27
Identities = 64/157 (40%), Positives = 93/157 (58%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMH+ +G S S P P W + + +++ V+K ++G + + IG ILRD +G+
Sbjct: 1 MGRMHSAGKGISSSAIPYSRNAPSWFKLSSDEVVEQVIKYARKGLTPSQIGVILRDAHGV 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
K+ + RIL+ +GLAPE+PEDL FLIK+AV +RKHLE++ KD S
Sbjct: 61 SQAKIVTGNK-------VLRILKSNGLAPELPEDLYFLIKKAVAVRKHLERNRKDKDSKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L LIES+I RL +YY+ LP +W+Y+ A LV
Sbjct: 114 RLILIESRIHRLARYYRTVSVLPPNWKYESATASALV 150
>gi|6320269 Ribosomal protein S13 (S27a) (YS15); Rps13p [Saccharomyces
cerevisiae] >gi|1350934|sp|P05756|RS13_YEAST 40S
RIBOSOMAL PROTEIN S13 (S27A) (YS15)
>gi|1077559|pir||S54048 ribosomal protein S13.e,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|706830|emb|CAA58980.1| (X84162) ribosomal protein
[Saccharomyces cerevisiae] >gi|798915|emb|CAA89093.1|
(Z49209) unknown [Saccharomyces cerevisiae]
>gi|1431517|emb|CAA98882.1| (Z74360) ORF YDR064w
[Saccharomyces cerevisiae]
Length = 151
Score = 119 bits (296), Expect = 2e-26
Identities = 63/157 (40%), Positives = 93/157 (59%), Gaps = 7/157 (4%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
M RMH+ +G S S P P W + + E + +VK ++G + + IG +LRD +G+
Sbjct: 1 MGRMHSAGKGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGV 60
Query: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
++ I RIL+ +GLAPEIPEDL +LIK+AV++RKHLE++ KD +
Sbjct: 61 TQARVITGNK-------IMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKF 113
Query: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
L LIES+I RL +YY+ LP +W+Y+ A LV
Sbjct: 114 RLILIESRIHRLARYYRTVAVLPPNWKYESATASALV 150
>gb|AAG19256.1| (AE005021) 30S ribosomal protein S15P; Rps15p [Halobacterium sp.
NRC-1]
Length = 155
Score = 111 bits (276), Expect = 3e-24
Identities = 65/161 (40%), Positives = 92/161 (56%), Gaps = 12/161 (7%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQ--- 57
MARMH R+RG SGS RP PP W + + IE VV+L ++G+ + IG LRD+
Sbjct: 1 MARMHTRRRGSSGSDRPTADEPPEWSDVDEDAIEERVVELAEQGHDPSQIGLKLRDEGVQ 60
Query: 58 -YGIPTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDL 116
+P VKL +T ILE H PE+PED L+++AV L +H+E + +D
Sbjct: 61 GTPVPDVKLATGKK-------VTEILEAHDAEPELPEDFRNLLEKAVRLHEHVEANGQDH 113
Query: 117 HSMRGLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
+ R LQ +SKIRRL YY R KL +++ Y E A+ ++
Sbjct: 114 QNKRALQNTQSKIRRLADYY-RGDKLDEEFAYSYETAREII 153
>sp|P05762|RS15_HALMA 30S RIBOSOMAL PROTEIN S15P (HMAS15) (HS11) >gi|70996|pir||R3HS11
ribosomal protein S15 [validated] - Haloarcula
marismortui >gi|148810|gb|AAA72208.1| (J04062) ribosomal
protein S11 [Haloarcula marismortui]
Length = 156
Score = 106 bits (261), Expect = 2e-22
Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 12/157 (7%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQ--- 57
MARMH R+RG S S +P PP W + + IE VV+L ++G+S + IG LRD+
Sbjct: 1 MARMHTRRRGSSDSDKPAADEPPEWSDVDEDAIEARVVELAEQGHSPSEIGLKLRDEGVQ 60
Query: 58 -YGIPTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDL 116
IP V L +T ILE++ P++PEDL L++RAV LR H++++P D
Sbjct: 61 GTPIPDVSLATGKK-------VTEILEENEAEPDLPEDLRNLLERAVRLRDHMDENPGDY 113
Query: 117 HSMRGLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQA 153
+ R LQ +SKIRRL+ YY R ++ +++ Y + A
Sbjct: 114 QNKRALQNTQSKIRRLIDYY-RGDEVDENFTYSYDNA 149
>prf||1202284A protein H-S11,ribosomal [Haloarcula marismortui]
Length = 155
Score = 104 bits (257), Expect = 6e-22
Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 12/156 (7%)
Query: 2 ARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQ---- 57
ARMH R+RG S S +P PP W + + IE VV+L ++G+S + IG LRD+
Sbjct: 1 ARMHTRRRGSSDSDKPAADEPPEWADVDEDAIEARVVELAEQGHSPSEIGLKLRDEGVQG 60
Query: 58 YGIPTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLH 117
IP V L +T ILE++ P++PEDL L++RAV LR H++++P D
Sbjct: 61 TPIPDVSLATGKK-------VTEILEENEAEPDLPEDLRNLLERAVRLRDHMDENPGDYQ 113
Query: 118 SMRGLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQA 153
+ R LQ +SKIRRL+ YY R ++ +++ Y + A
Sbjct: 114 NKRALQNTQSKIRRLIDYY-RGDEVDENFTYSYDNA 148
>sp|P27072|RS13_MUSDO 40S RIBOSOMAL PROTEIN S13 >gi|103536|pir||S18109 ribosomal protein
S13.e, cytosolic - house fly (fragment)
>gi|9690|emb|CAA44547.1| (X62673) ribosomal protein S13
[Musca domestica]
Length = 114
Score = 99.5 bits (244), Expect = 2e-20
Identities = 54/119 (45%), Positives = 75/119 (62%), Gaps = 7/119 (5%)
Query: 39 KLRKEGYSTAMIGTILRDQYGIPTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFL 98
KL K+G + + IG ILRD +G+ V+ N N+ I RI++ GL P+IPEDL +
Sbjct: 2 KLGKKGLTPSKIGIILRDSHGVAQVRFV----NGNK---ILRIMKSVGLKPDIPEDLYHM 54
Query: 99 IKRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
IK+AV +RKHLE++ KD L L+ES+I RL +YYK K LP +W+Y+ A LV
Sbjct: 55 IKKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALV 113
>gb|AAC15854.1| (L05090) ribosomal protein S13 [Homo sapiens]
Length = 116
Score = 92.4 bits (226), Expect = 2e-18
Identities = 52/123 (42%), Positives = 74/123 (59%), Gaps = 7/123 (5%)
Query: 12 SGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGIPTVKLFRDPDN 71
S S P R + P WL+ T +D++ + KL K+G + + IG ILRD +G+ V+
Sbjct: 1 SQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK- 59
Query: 72 PNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMRGLQLIESKIRR 131
I RIL+ GLA ++PEDL LIK+AV +RKHLE++ KD + L LIES+I R
Sbjct: 60 ------ILRILKSKGLASDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHR 113
Query: 132 LVK 134
L +
Sbjct: 114 LAR 116
>gb|AAD05366.1| (U58510) small subunit ribosomal protein S13 [Chlorarachnion
CCMP621]
Length = 183
Score = 88.2 bits (215), Expect = 5e-17
Identities = 54/149 (36%), Positives = 82/149 (54%), Gaps = 8/149 (5%)
Query: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEG-YSTAMIGTILRDQYG 59
M +M+++ +G S + P R W T +++ ++ L K + IG +LRD+
Sbjct: 1 MGKMYSKGKGISSTTVPYRKYSCEWKGLTSQNLIKIIANLAKNNNLPPSKIGLVLRDE-- 58
Query: 60 IPTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSM 119
KL D N + + I++IL GL P +PEDL +LIK+A ++ HL DL +
Sbjct: 59 ----KLVVDTRNISG-MNISKILRLKGLVPLVPEDLFYLIKKANKIKAHLSDFKHDLANR 113
Query: 120 RGLQLIESKIRRLVKYYKRKGKLPKDWRY 148
L LIES I RL +YYKR +LPK+W+Y
Sbjct: 114 YHLNLIESHIYRLSRYYKRIFRLPKNWKY 142
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.140 0.413
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61878568
Number of Sequences: 2977
Number of extensions: 2429625
Number of successful extensions: 6826
Number of sequences better than 1.0e-10: 40
Number of HSP's better than 0.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6752
Number of HSP's gapped (non-prelim): 40
length of query: 158
length of database: 189,106,746
effective HSP length: 52
effective length of query: 106
effective length of database: 157,985,422
effective search space: 16746454732
effective search space used: 16746454732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)