BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0034 (recJ-like) DE:PUTATIVE SS-DNA-SPECIFIC EXONUCLEASE
RECJ RELATED
(481 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75192 probable ss-DNA-specific exonuclease recj related PA... 966 0.0
pir||H71224 hypothetical protein PH0059 - Pyrococcus horikoshii ... 875 0.0
gi|11498342 conserved hypothetical protein [Archaeoglobus fulgid... 292 5e-78
pir||E69056 conserved hypothetical protein MTH1422 - Methanobact... 260 2e-68
gb|AAG20439.1| (AE005116) Vng2333c [Halobacterium sp. NRC-1] 247 3e-64
emb|CAC11667.1| (AL445064) conserved hypothetical protein [Therm... 235 7e-61
gi|11498306 conserved hypothetical protein [Archaeoglobus fulgid... 214 1e-54
sp|Q58241|Y831_METJA HYPOTHETICAL PROTEIN MJ0831 >gi|2128533|pir... 207 2e-52
sp|Q58387|RECJ_METJA SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RE... 201 1e-50
pir||B69086 conserved hypothetical protein MTH164 - Methanobacte... 187 2e-46
gi|11497695 conserved hypothetical protein [Archaeoglobus fulgid... 79 9e-14
>pir||G75192 probable ss-DNA-specific exonuclease recj related PAB0034 -
Pyrococcus abyssi (strain Orsay)
>gi|5457499|emb|CAB48990.1| (AJ248283) PUTATIVE
SS-DNA-SPECIFIC EXONUCLEASE RECJ RELATED [Pyrococcus
abyssi]
Length = 481
Score = 966 bits (2470), Expect = 0.0
Identities = 481/481 (100%), Positives = 481/481 (100%)
Query: 1 MVFLMDKKGFLEKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFH 60
MVFLMDKKGFLEKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFH
Sbjct: 1 MVFLMDKKGFLEKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFH 60
Query: 61 VSIVKQVSEDLVRQLKDEDYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPPENVELPE 120
VSIVKQVSEDLVRQLKDEDYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPPENVELPE
Sbjct: 61 VSIVKQVSEDLVRQLKDEDYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPPENVELPE 120
Query: 121 KHILVNPVQFGANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGM 180
KHILVNPVQFGANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGM
Sbjct: 121 KHILVNPVQFGANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGM 180
Query: 181 NLDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNNN 240
NLDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNNN
Sbjct: 181 NLDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNNN 240
Query: 241 FNPDKRYWELSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEARE 300
FNPDKRYWELSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEARE
Sbjct: 241 FNPDKRYWELSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEARE 300
Query: 301 FATLLNATGRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEG 360
FATLLNATGRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEG
Sbjct: 301 FATLLNATGRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEG 360
Query: 361 EHVYVLYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKAL 420
EHVYVLYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKAL
Sbjct: 361 EHVYVLYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKAL 420
Query: 421 EKGYHLGEALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQVKGSENQSE 480
EKGYHLGEALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQVKGSENQSE
Sbjct: 421 EKGYHLGEALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQVKGSENQSE 480
Query: 481 S 481
S
Sbjct: 481 S 481
>pir||H71224 hypothetical protein PH0059 - Pyrococcus horikoshii
>gi|3256444|dbj|BAA29127.1| (AP000001) 478aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 478
Score = 875 bits (2237), Expect = 0.0
Identities = 424/477 (88%), Positives = 460/477 (95%)
Query: 2 VFLMDKKGFLEKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFHV 61
+FLMDK+GFLEK++EAVDL +FHIELGHTIRIISHRDADGITSAAI+AKALAREGA FH+
Sbjct: 1 MFLMDKEGFLEKIREAVDLVKFHIELGHTIRIISHRDADGITSAAILAKALAREGAKFHI 60
Query: 62 SIVKQVSEDLVRQLKDEDYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPPENVELPEK 121
SIVKQVSE+LVRQLKDE+YK+ IFSDLGSGSLS+I EHLKD++V+ILDHHPPE VE EK
Sbjct: 61 SIVKQVSEELVRQLKDEEYKIIIFSDLGSGSLSLIGEHLKDKSVVILDHHPPEPVETHEK 120
Query: 122 HILVNPVQFGANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGMN 181
HIL NPVQFGANSVRDLSGSGV YFFARELNE NKDLAYIAIVGAVGDMQENDGVFHGMN
Sbjct: 121 HILANPVQFGANSVRDLSGSGVSYFFARELNEMNKDLAYIAIVGAVGDMQENDGVFHGMN 180
Query: 182 LDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNNNF 241
LDIIEDGKSLGILEV+KELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRN F
Sbjct: 181 LDIIEDGKSLGILEVRKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNKGF 240
Query: 242 NPDKRYWELSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEAREF 301
+PDK+YWELS+E++++LH+ LVIHMIKHGAGKEEID+LIGDVVISPLYPQGDPRHEAREF
Sbjct: 241 DPDKKYWELSDEDRKKLHDYLVIHMIKHGAGKEEIDKLIGDVVISPLYPQGDPRHEAREF 300
Query: 302 ATLLNATGRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEGE 361
ATLLNATGRLNLGNLGVAVCLGDEEAF++AMKMVEEYK+EQIEARKWL+QNW EVWEGE
Sbjct: 301 ATLLNATGRLNLGNLGVAVCLGDEEAFRKAMKMVEEYKKEQIEARKWLLQNWEKEVWEGE 360
Query: 362 HVYVLYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALE 421
+VY+LYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALE
Sbjct: 361 NVYILYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALE 420
Query: 422 KGYHLGEALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQVKGSENQ 478
+GYHLGEAL+KAAE+IGGEGGGHAIAAGIRVPKAR AEFRKLIDK+LGEQVK +E+Q
Sbjct: 421 RGYHLGEALRKAAEIIGGEGGGHAIAAGIRVPKARFAEFRKLIDKLLGEQVKKNEDQ 477
>gi|11498342 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450705|pir||G69341 conserved hypothetical protein
AF0735 - Archaeoglobus fulgidus
>gi|2649876|gb|AAB90503.1| (AE001054) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 457
Score = 292 bits (740), Expect = 5e-78
Identities = 176/475 (37%), Positives = 278/475 (58%), Gaps = 32/475 (6%)
Query: 12 EKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFHVSIVKQVSEDL 71
E +K A +LA I + +++H DADGIT+ I +L R G + + VKQ+ E
Sbjct: 3 ELLKRAAELAG-RILKNEEVLVVTHIDADGITAGTIAHTSLLRAGVESGIRFVKQLDESE 61
Query: 72 VRQLKDEDYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPPENVELPEKH--ILVNPVQ 129
+ +KDE+ V+ F+D+GSG L++ L I DHH LP+ H + +NP
Sbjct: 62 IEAIKDENTFVW-FTDIGSGVLNM----LDGIEFAITDHH------LPQSHHPMQLNPHD 110
Query: 130 FGANSVRDLSGSGVCYFFARELNER---------NKDLAYIAIVGAVGDMQEND-GVFHG 179
FG + +LSG+ Y ++ L N DL I+IVGAVGD+Q++ G+ G
Sbjct: 111 FGYDGAFELSGATTTYLVSKYLRNGRTLFDYENDNSDLLPISIVGAVGDLQDSRWGMLKG 170
Query: 180 MNLDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNN 239
+N +I+ +G + V ++LR FG++TRP+ +ML Y ++P IP IT +E + L +
Sbjct: 171 LNREIVMEGLRKKQIAVLRDLRFFGKQTRPVAKMLEYNSDPFIPGITANESGVLNLLESL 230
Query: 240 NFNPDKRYWELSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEAR 299
+P R+ +L E+KRR+ + LV + G I R++G+ I +G + +A
Sbjct: 231 GVDPWVRWIDLEIEKKRRVVSALVSLAMDFGIPYTSILRMVGECYILVNEEEGTEKRDAM 290
Query: 300 EFATLLNATGRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWE 359
EF+TLLNAT R N +G+ VCLGDE A++RA +++ +++ + +++ + E+
Sbjct: 291 EFSTLLNATARYNEAEVGMGVCLGDERAYRRARTLLQNHRKNLSDGIRFVDREGIEEL-- 348
Query: 360 GEHVYVLYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKA 419
E++ + G NI DT+VGI A M G N EKP+I FA++D+ +K SAR T +
Sbjct: 349 -ENIQYFHAGSNIPDTIVGIVAGMCFYKG--NREKPIIAFAESDKG---VKVSARATYRL 402
Query: 420 LEKGYHLGEALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQVKG 474
+E+G HL +ALK+AAE +GG GGGH++AAG +P+ R EF KL+D+I+GEQ++G
Sbjct: 403 VERGVHLAKALKRAAEAVGGVGGGHSVAAGATIPEGREDEFLKLLDRIIGEQLRG 457
>pir||E69056 conserved hypothetical protein MTH1422 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622535|gb|AAB85899.1| (AE000904) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 457
Score = 260 bits (658), Expect = 2e-68
Identities = 157/464 (33%), Positives = 259/464 (54%), Gaps = 30/464 (6%)
Query: 11 LEKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFHVSIVKQVSED 70
L++ EA + H+E G+ IRIISH DADG+++A +VA+A++ FH+SI+ ++ ++
Sbjct: 18 LKRGAEASKVLEEHLERGNIIRIISHNDADGLSAAGVVARAISSMNGQFHISILSRLKKE 77
Query: 71 LVRQLKDEDYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPPENVELPEKHILVNPVQF 130
+++L E Y +F F D+GS L I D VI+ DHH P E + +NP
Sbjct: 78 FIKKLSGEKYSLFFFCDMGSAYLEEISRLKGD--VIVADHHQPSESEAGPHVVHINPHLH 135
Query: 131 GANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGMNLDIIEDGKS 190
G + RDLS SG Y R LN + A +A+VGA+GDMQ DG F G N I+E+
Sbjct: 136 GLDGSRDLSASGTAYLATRLLNRKT---APLALVGALGDMQYTDG-FTGANRFIMEEAVE 191
Query: 191 LGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNNNFNPDKRYWEL 250
G+L+V +L+L R T PLY+ +AY NP +P +TGD ++ +L N + +Y +L
Sbjct: 192 EGVLQVHSDLKLASRYTEPLYRSIAYTFNPALPGLTGDMEASMGFLENIGVSYGVKYPDL 251
Query: 251 SEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRH--EAREFATLLNAT 308
S EE+ L ++E+ R I + ++ + R+ + + A +L+A
Sbjct: 252 SPEERDVL--------------RDELTR-INPEIFGEVFTSREFRNIGDLSDIAGVLDAC 296
Query: 309 GRLNLGNLGVAVCLGDEE-AFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEGEHVYVLY 367
G+ +G+ +CLG+ E A A+++ + Y+ E ++ W+ + ++ + E++ +Y
Sbjct: 297 GKNRKYGIGIGLCLGEREGALDVALELQKNYREELVKGLAWIRREGSTTL---ENLQYIY 353
Query: 368 VGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALEKGYHLG 427
++G AS++++ + +P+ P++ + D+ +K SARTT A+E+G +LG
Sbjct: 354 SEDKAFKGIMGTIASISLSLKILDPDIPLLGLSRMDQH---VKVSARTTRPAVERGVNLG 410
Query: 428 EALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQ 471
AL+ AA GG GGGH IAAG VP + F +L+D+ILG Q
Sbjct: 411 VALRDAAASFGGTGGGHDIAAGAMVPYRDMESFLQLVDEILGTQ 454
>gb|AAG20439.1| (AE005116) Vng2333c [Halobacterium sp. NRC-1]
Length = 475
Score = 247 bits (623), Expect = 3e-64
Identities = 155/454 (34%), Positives = 236/454 (51%), Gaps = 15/454 (3%)
Query: 30 TIRIISHRDADGITSAAIVAKALAREGADFHVSIVKQVSEDLVRQLKDEDYKVFIFSDLG 89
++ + SH DADG+TSA I + AL R V KQ+ ++ + + ++ +F+D G
Sbjct: 27 SVLVASHIDADGLTSAGIASTALERAAIPHEVVFSKQLDDEEIADIAGANHGTVLFTDFG 86
Query: 90 SGSLSIIKEHLK--DRTVIILDHHPPENVELPEKHILVNPVQFGANSVRDLSGSGVCYFF 147
SG L I H + + T +I DHH P + H+ NP+ G + +LSG+G Y
Sbjct: 87 SGQLDAITAHERAGEFTPVIADHHQPAENAATDYHL--NPLLEGVDGGTELSGAGATYVL 144
Query: 148 ARELNERNK-DLAYIAIVGAVGDMQENDGVFHGMNLDIIEDGKSLGILEVKKELRLFGRE 206
AR L + DLA +A+VGAVGD Q DG G N + DG G+L+ L L+G +
Sbjct: 145 ARALLGTDATDLAALAVVGAVGDRQTVDGELVGANTRVAADGVEAGVLDTATGLALYGTQ 204
Query: 207 TRPLYQMLAYATNPEIPEITGDERKAIEWLR----NNNFNPDKRYW-ELSEEEKRRLHNL 261
TRPL ++L YA+ IP IT D + AI +L + + D R W L +E+R + +
Sbjct: 205 TRPLPRLLEYASELYIPGITNDHQGAIRFLDALDVDLHDGGDWRTWASLDHDERRTVVSA 264
Query: 262 LVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEAREFATLLNATGRLNLGNLGVAVC 321
LV ++ G E+ L+G G +A EFATLLNAT R ++G+AVC
Sbjct: 265 LVKRAVRTGVPSAEVTTLVGTTYTLTDEEPGTALRDASEFATLLNATARYERADVGLAVC 324
Query: 322 LGDE-EAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEGEHVYVLYVGKNIRDTLVGIA 380
+GD +A +RA + EE+++ E W+ + V + + + IR+T+VGI
Sbjct: 325 MGDRGDALERARSLREEHRQTLSEGVSWVTR---EGVTVEDDLQWFHADDRIRETIVGIV 381
Query: 381 ASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALEKGYHLGEALKKAAEMIGGE 440
A MA++ ++P++ FA D++P +K SAR T + ++ G L +++AA GG+
Sbjct: 382 AGMALSGDETENDRPIVAFAAKDDEP-AVKVSARATARVVDAGVDLAVVVREAAAAAGGD 440
Query: 441 GGGHAIAAGIRVPKARLAEFRKLIDKILGEQVKG 474
GGGH AAG VP F +L Q G
Sbjct: 441 GGGHEAAAGATVPAGNERAFLDAASGVLAAQRGG 474
>emb|CAC11667.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 491
Score = 235 bits (594), Expect = 7e-61
Identities = 151/468 (32%), Positives = 255/468 (54%), Gaps = 43/468 (9%)
Query: 31 IRIISHRDADGITSAAIVAKALAREGADFHVSIVKQVSEDLVRQLKDEDYKVFIFSDLGS 90
I I+SH DADG++S+AI +L R G + V +K + +++ L +K F+ DLGS
Sbjct: 34 IIIVSHIDADGLSSSAIAKTSLDRAGIENEVVFIKNLDPMVLKGLPP-GFKWFV--DLGS 90
Query: 91 GSLSIIKEHLKDRTVIILDHHPPENVELP----------------EKHILVNPVQFGANS 134
GS+++I++ + +I DHH P+ ++ E VNP G N
Sbjct: 91 GSMNMIRD--ANIECLITDHHLPDQFDIDLEFRRDIVKFLQHSDFEGITQVNPHMVGLNG 148
Query: 135 VRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQE-NDGVFHGMNLDIIEDGKSLGI 193
++SGSG + + +++ N D+ AIVGA+GD+Q+ N GV G+N I+ G +G+
Sbjct: 149 SYEISGSGTTFLVSMAMSDENADMVVPAIVGAIGDVQDANSGVLEGINRSFIDLGVDIGL 208
Query: 194 LEVKKELRLFGRETRPLYQMLAYATN--PEIPEITGDERKAIEWLRNNNFNPDKR--YWE 249
+ VK +LR FGR TRPL + L ++ P + + G + + +L + D+ Y +
Sbjct: 209 ISVKNDLRFFGRATRPLSKFLELGSDRIPGVSNLRGSASRMLRYLNVPLKDGDRFRVYND 268
Query: 250 LSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEAREFATLLNATG 309
LSE+EK R+ ++ +I AG +++D + G+ + P P ++A+EFATLLN+ G
Sbjct: 269 LSEDEKTRIRTEILKRLII--AGIDDLDSIFGETYVFPKEDARSPTYDAKEFATLLNSCG 326
Query: 310 RLNLGNLGVAVCLGDE-EAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEG----EHVY 364
R + G G+ V GD E++ +A+ ++ ++R+ L+ +N + EG ++
Sbjct: 327 RYDEGLTGLKVAAGDRGESYSKALSLMASHRRK-------LVNGYNHIMAEGIKSLNNID 379
Query: 365 VLYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALEKGY 424
Y GK+I + +VGI A+M + A + +P+I AD+D P +K S R + L+ G
Sbjct: 380 YFYAGKDINENIVGIIANMIL-ARDPDTVRPLITMADSD--PGTVKASVRANKTFLKIGI 436
Query: 425 HLGEALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQV 472
L + ++AA +GG GGGH +AAG +P R+ +F ID +G+ V
Sbjct: 437 DLADLFRRAAATVGGVGGGHDLAAGANIPAGRMNDFLNFIDLEIGKAV 484
>gi|11498306 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450702|pir||C69337 conserved hypothetical protein
AF0699 - Archaeoglobus fulgidus
>gi|2649915|gb|AAB90540.1| (AE001056) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 438
Score = 214 bits (540), Expect = 1e-54
Identities = 151/458 (32%), Positives = 246/458 (52%), Gaps = 39/458 (8%)
Query: 12 EKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFHVSIVKQVSEDL 71
E+ + A DL H IRI +H DADGI++ AI+AKAL + G FH++ +K ++E
Sbjct: 12 ERARRAADLVARH----DFIRIYTHHDADGISAGAIIAKALLKAGKAFHITFLKGLNEPF 67
Query: 72 VRQLKDEDYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPPENVELPEKHIL-VNPVQF 130
+ E ++ +F+D+GSG +I + D V+ILDHH P P++++ VNP
Sbjct: 68 ----EYEQGELLLFADMGSGYADLISQ--VDTDVVILDHHIPNGEIRPKRNLAHVNPHLV 121
Query: 131 GANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGMNLDIIEDGKS 190
G + +LS SGVCYFFA EL RN++LA +A++GA+GD Q G N +I+ +G
Sbjct: 122 GMDGTFELSASGVCYFFANELG-RNRELASVALIGALGDKQR----MVGGNEEILRNGLE 176
Query: 191 LGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNNNFNPDKRYWEL 250
G++E +K + L + R +L + P + + G E + E+L + DK + EL
Sbjct: 177 AGVVEERKGVSLPSGKLR---DVLVQSLEPFL-DFYGKEEELEEFLEKARLDGDKEFDEL 232
Query: 251 SEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGD-VVISPLYPQGDPRHEAREFATLLNATG 309
S+EE RRL + +V+ ++K A +++G +++ L + A ++N+ G
Sbjct: 233 SDEEIRRLADAIVLRLLKMNAYTGIFSQIVGKRLILKNLLIKN-----AVTAVDVVNSCG 287
Query: 310 RLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEGEHVYVLYVG 369
R+ + +A+ LGD EA RA+++ EY + +E K W +EV EG + L +
Sbjct: 288 RIGAMSTALAMLLGDVEAMNRAIRINNEYVIQTLEELK----KWRNEVKEGFCIRYLVME 343
Query: 370 KNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALEKGYHLGEA 429
+ + + S + +KP+IV +E K SART E AL + L E
Sbjct: 344 NGLSASPIATIFSRYVFT-----DKPLIVVNIKNE---YAKVSARTNE-ALAERVDLAEV 394
Query: 430 LKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKI 467
++ AAE +GG GGGH +AAG + ++ EF K +D++
Sbjct: 395 MRLAAEKVGGRGGGHRVAAGANITPDKVEEFLKEVDRL 432
>sp|Q58241|Y831_METJA HYPOTHETICAL PROTEIN MJ0831 >gi|2128533|pir||G64403 hypothetical
protein MJ0831 - Methanococcus jannaschii
>gi|1591518|gb|AAB98830.1| (U67526) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 432
Score = 207 bits (521), Expect = 2e-52
Identities = 149/478 (31%), Positives = 265/478 (55%), Gaps = 55/478 (11%)
Query: 4 LMDKKGFLEKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFHVSI 63
+M+K +EKV +A+ + G+ IR+I+H D DG++S I+AK L R FH+++
Sbjct: 1 MMEKLKEIEKVTKAIK-EKILNHYGY-IRVITHHDTDGLSSGGILAKMLMRTNKLFHLTV 58
Query: 64 VKQVSEDLVRQLKDE---DYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPP--ENVEL 118
V+ +S++++ +L E + +FIF+D+GSG + I +H + IILDHHPP ++ +
Sbjct: 59 VEHLSKEVIEKLAKENEVNKPLFIFADMGSGQIEEIIKH--NFNAIILDHHPPVIKDSFI 116
Query: 119 PEKHILVNPVQFGANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFH 178
E I +NP FG + R+++ SGVCY ARE DL+ +AIVG +GDMQ N
Sbjct: 117 NENIIQLNPHIFGVDGSREITASGVCYLVAREFG--YYDLSVLAIVGIIGDMQYNP--LL 172
Query: 179 GMNLDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRN 238
G+N I+ + + +++ ++ ++ +Y+ +AY T P IP++ E KA ++L++
Sbjct: 173 GLNKFIVNEAREYRYVKIMNDI-VYNIYDVEIYKAIAYCTKPYIPDL-ASEGKAFKFLKD 230
Query: 239 NNFNPDKRYWELSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEA 298
+P+K+ +L + +K++L + ++ K I+ L+ D + H+
Sbjct: 231 IGIDPNKK--QLDDTDKKKLLSAIIFKYPK-------IENLLIDRYLI--------EHKV 273
Query: 299 RE---FATLLNATGRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNS 355
R+ + +LNA GR L +G+ +CL D+E K +++ EYK+ I K +
Sbjct: 274 RDAFLLSEMLNAVGRNGLFAVGIGICLEDDECIKIGNQILWEYKKNLINELK------SV 327
Query: 356 EVWEGEHVYVLYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSART 415
++ + ++Y + GK ++GI AS+ ++ +KPVI + + ++ K SAR
Sbjct: 328 KLKKLNNIY-YFEGKK---GMIGIIASILVD------DKPVIGY---HIEGDIAKFSARG 374
Query: 416 TEKALEKGYHLGEALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQVK 473
+ +G +L A+ A E GG GGGH +A+G V K ++ EF K +D+I+GEQ++
Sbjct: 375 NRDLVNRGLNLSVAMAVAKE-FGGNGGGHDVASGAVVSKDKVQEFLKRVDEIIGEQLR 431
>sp|Q58387|RECJ_METJA SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ
>gi|2128614|pir||A64422 conserved hypothetical protein
MJ0977 - Methanococcus jannaschii
>gi|1591640|gb|AAB98980.1| (U67540) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 469
Score = 201 bits (507), Expect = 1e-50
Identities = 145/452 (32%), Positives = 235/452 (51%), Gaps = 25/452 (5%)
Query: 31 IRIISHRDADGITSAAIVAKALAREGADFHVSIVKQVSEDLVRQLKDEDYKVFIFSDLGS 90
I I++H D DG+TS AI+ K R D +KQ++ + + + +DY + IF+DLGS
Sbjct: 22 ILIVTHIDTDGLTSRAILQKLAERLNLDADFMFLKQITIETINDIPFKDYDLIIFADLGS 81
Query: 91 GSLSIIKEHL-------KDRTVIILDHHPPENVELPEKHILVNPVQFGANSVRDLSGSGV 143
G L +IKE L K +IILDHH PE +++P+ I +NP+ A S ++ G+GV
Sbjct: 82 GQLKMIKEKLDELNLSDKRDKIIILDHHQPEEIKIPKTIIHINPLTI-AKSGAEICGAGV 140
Query: 144 CYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGMNLDIIEDGKSLGILEVKKELRLF 203
Y FA+ +N DLA A++GAVGD+Q +G G+N I+ D G ++VK +L+++
Sbjct: 141 SYLFAKAINNDWIDLAKYAVLGAVGDIQNIEGKLIGLNRKILCDAIMNGDVKVKTDLQMY 200
Query: 204 GRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNNN------FNPDKRYWELSEEEKRR 257
GR+TRPL+ + Y + ++ ++ K I+++++ N NP R E+ E KR
Sbjct: 201 GRQTRPLFVSMRYWADVR-TDLLNNDSKIIKYIQSINKKYDIEINPTMRLAEIPFEHKRI 259
Query: 258 LHNLLVIHMIKH--GAGKEEIDRLI-GDVVISPLYPQGDPRHEAREFATLLNATGRLNLG 314
+ N L+I + + I ++I G+V G P + EF+T +NA R
Sbjct: 260 IGNELLIKCLNYVPNHWTPYIPKVIFGEVYEFRGEEFGSPLRDLEEFSTCINACSRYGDY 319
Query: 315 NLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEGEHVYVLYVGKNIRD 374
+ V +GD + + R KM+ ++ + R+ L N + + + I
Sbjct: 320 ETALNVLMGDRDKYYR--KMLSNLRKHRNNLREALEHVKNDVEIIQKDRFQYFETDKIMS 377
Query: 375 TLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTE-KALEKGYHLGEALKKA 433
+VGI A M+ + + KP +FA T ED N K SAR + + +L +A+K A
Sbjct: 378 NIVGIVAGMSYSIEEVDWMKP--IFAIT-EDENGYKVSARCPKLLCFAEDVNLAKAIKYA 434
Query: 434 AEMIGGEGGGHAIAAGIRVPKARLAEFRKLID 465
+E + G GGGH A G +P + EF K ++
Sbjct: 435 SEKVNGSGGGHKFACGAYIPDNK-REFIKYLE 465
>pir||B69086 conserved hypothetical protein MTH164 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621206|gb|AAB84670.1| (AE000804) single-stranded
DNA exonuclease RecJ related protein [Methanobacterium
thermoautotrophicum]
Length = 450
Score = 187 bits (471), Expect = 2e-46
Identities = 137/460 (29%), Positives = 227/460 (48%), Gaps = 34/460 (7%)
Query: 25 IELGHTIRIISHRDADGITSAAIVAKALAREGADFHVSIVKQVSEDLVRQLKDEDYKVFI 84
+E T+ + SH D DGIT+A +++K L R D V I+ ++E +L + + I
Sbjct: 2 VESSETVTVYSHTDCDGITAATVLSKVLERLDMDHEVRIIN-INEVPEVELSSD---LTI 57
Query: 85 FSDLGSGSLSIIKEHLKDRT-VIILDHHPPE---NVELPEKHIL-VNPVQFGANSVRDLS 139
FSDLGSG + E+LK + V+ILDHHPP N P L +NP+ +G + +S
Sbjct: 58 FSDLGSGQR--VHENLKSNSRVLILDHHPPVRKMNFTAPSGDFLEINPIFYGMDGSTHVS 115
Query: 140 GSGVCYFFARELNERNKDLAYIAIVGAVGDMQEND-GVFHGMNLDIIEDGKSLGILEVKK 198
G G+ Y ARE R DL+++ ++ AVGDMQ G G+N DI++D S G +E +
Sbjct: 116 GGGLTYLLAREFGYR--DLSWMGLLAAVGDMQNITLGKMEGLNRDILQDSVSEGQIECQS 173
Query: 199 ELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRN-----NNFNPDKRYWELSEE 253
+L ++GR TRPL L+Y + +P T + + I L+N N ++ +L+++
Sbjct: 174 DLTIYGRHTRPLVNALSYFGDVTLPT-TNNTNECIARLKNLGIPLKNGESQRKLCDLTDD 232
Query: 254 EKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRH-----EAREFATLLNAT 308
EKR+L N + M+ E R + +++ +Y + EF+T +NA
Sbjct: 233 EKRKLFNEIYRMMVSEVP--ERYHRYLPRLILGEVYELSSEERYTVFRDLSEFSTAVNAC 290
Query: 309 GRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEGEHVYVLYV 368
R + L + + GD + + ++ V R + L + + E+ +
Sbjct: 291 NRNSRWKLAMEIIGGDRKGKRDELEDVLRDHRTYLAVT--LDEIMDEELIRDMENLQYFH 348
Query: 369 GKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALEKGYHLGE 428
+ +VG A M + G + +P+I +T + +K S R + G H G
Sbjct: 349 APGVNTAVVGTVAGMLL--GYGDWRRPMIGLGETADG---LKVSLRCSRLLAFDGIHFGS 403
Query: 429 ALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKIL 468
+++ AE +GG GGGHA A G +P R EF +L+D+ +
Sbjct: 404 IMRRVAEKVGGSGGGHATACGAYIPSEREREFLELLDRAI 443
>gi|11497695 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7482966|pir||C69259 conserved hypothetical protein
AF0075 - Archaeoglobus fulgidus
>gi|2650572|gb|AAB91152.1| (AE001101) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 413
Score = 79.2 bits (192), Expect = 9e-14
Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 5/192 (2%)
Query: 10 FLEKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFHVSIVKQVSE 69
F E V+ A + R + G + ++ H DADG+ S A++ K G + + +++V
Sbjct: 12 FFEWVERAANYIRSYA--GGGVTVVHHNDADGLCSGALLKKLCEYCGFEAELICIEKVYP 69
Query: 70 DLVRQLKDEDYKVFIFSDLGSGSLSII-KEHLKDRTVIILDHHPPENVELPEKHILVNPV 128
+V ++ + I++DLG + +I K + V+I+DHHP ++++ H+L +P
Sbjct: 70 AVVEKIHSSRDGMIIYTDLGGLAADMIDKINAGKSMVLIIDHHPAKDIDSDYVHVL-DPE 128
Query: 129 QFGANSVRDLSGSGVCYFFAREL-NERNKDLAYIAIVGAVGDMQENDGVFHGMNLDIIED 187
G + +S S + Y F R + E K AYIA++G+VGD + G G + +E+
Sbjct: 129 LAGISGDVFVSASSLNYIFFRAVAGEEAKKYAYIAVLGSVGDYHDRSGGVLGFDRFALEE 188
Query: 188 GKSLGILEVKKE 199
G ++V+ E
Sbjct: 189 AIDEGQVKVRFE 200
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.394
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182999423
Number of Sequences: 2977
Number of extensions: 8097333
Number of successful extensions: 23089
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 23032
Number of HSP's gapped (non-prelim): 11
length of query: 481
length of database: 189,106,746
effective HSP length: 58
effective length of query: 423
effective length of database: 154,394,500
effective search space: 65308873500
effective search space used: 65308873500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 167 (69.5 bits)