BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0034 (recJ-like) DE:PUTATIVE SS-DNA-SPECIFIC EXONUCLEASE
RECJ RELATED
         (481 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75192 probable ss-DNA-specific exonuclease recj related PA...   966  0.0
pir||H71224 hypothetical protein PH0059 - Pyrococcus horikoshii ...   875  0.0
gi|11498342 conserved hypothetical protein [Archaeoglobus fulgid...   292  5e-78
pir||E69056 conserved hypothetical protein MTH1422 - Methanobact...   260  2e-68
gb|AAG20439.1| (AE005116) Vng2333c [Halobacterium sp. NRC-1]          247  3e-64
emb|CAC11667.1| (AL445064) conserved hypothetical protein [Therm...   235  7e-61
gi|11498306 conserved hypothetical protein [Archaeoglobus fulgid...   214  1e-54
sp|Q58241|Y831_METJA HYPOTHETICAL PROTEIN MJ0831 >gi|2128533|pir...   207  2e-52
sp|Q58387|RECJ_METJA SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RE...   201  1e-50
pir||B69086 conserved hypothetical protein MTH164 - Methanobacte...   187  2e-46
gi|11497695 conserved hypothetical protein [Archaeoglobus fulgid...    79  9e-14

>pir||G75192 probable ss-DNA-specific exonuclease recj related PAB0034 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5457499|emb|CAB48990.1| (AJ248283) PUTATIVE
           SS-DNA-SPECIFIC EXONUCLEASE RECJ RELATED [Pyrococcus
           abyssi]
           Length = 481
           
 Score =  966 bits (2470), Expect = 0.0
 Identities = 481/481 (100%), Positives = 481/481 (100%)

Query: 1   MVFLMDKKGFLEKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFH 60
           MVFLMDKKGFLEKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFH
Sbjct: 1   MVFLMDKKGFLEKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFH 60

Query: 61  VSIVKQVSEDLVRQLKDEDYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPPENVELPE 120
           VSIVKQVSEDLVRQLKDEDYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPPENVELPE
Sbjct: 61  VSIVKQVSEDLVRQLKDEDYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPPENVELPE 120

Query: 121 KHILVNPVQFGANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGM 180
           KHILVNPVQFGANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGM
Sbjct: 121 KHILVNPVQFGANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGM 180

Query: 181 NLDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNNN 240
           NLDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNNN
Sbjct: 181 NLDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNNN 240

Query: 241 FNPDKRYWELSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEARE 300
           FNPDKRYWELSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEARE
Sbjct: 241 FNPDKRYWELSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEARE 300

Query: 301 FATLLNATGRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEG 360
           FATLLNATGRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEG
Sbjct: 301 FATLLNATGRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEG 360

Query: 361 EHVYVLYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKAL 420
           EHVYVLYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKAL
Sbjct: 361 EHVYVLYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKAL 420

Query: 421 EKGYHLGEALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQVKGSENQSE 480
           EKGYHLGEALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQVKGSENQSE
Sbjct: 421 EKGYHLGEALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQVKGSENQSE 480

Query: 481 S 481
           S
Sbjct: 481 S 481


>pir||H71224 hypothetical protein PH0059 - Pyrococcus horikoshii
           >gi|3256444|dbj|BAA29127.1| (AP000001) 478aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 478
           
 Score =  875 bits (2237), Expect = 0.0
 Identities = 424/477 (88%), Positives = 460/477 (95%)

Query: 2   VFLMDKKGFLEKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFHV 61
           +FLMDK+GFLEK++EAVDL +FHIELGHTIRIISHRDADGITSAAI+AKALAREGA FH+
Sbjct: 1   MFLMDKEGFLEKIREAVDLVKFHIELGHTIRIISHRDADGITSAAILAKALAREGAKFHI 60

Query: 62  SIVKQVSEDLVRQLKDEDYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPPENVELPEK 121
           SIVKQVSE+LVRQLKDE+YK+ IFSDLGSGSLS+I EHLKD++V+ILDHHPPE VE  EK
Sbjct: 61  SIVKQVSEELVRQLKDEEYKIIIFSDLGSGSLSLIGEHLKDKSVVILDHHPPEPVETHEK 120

Query: 122 HILVNPVQFGANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGMN 181
           HIL NPVQFGANSVRDLSGSGV YFFARELNE NKDLAYIAIVGAVGDMQENDGVFHGMN
Sbjct: 121 HILANPVQFGANSVRDLSGSGVSYFFARELNEMNKDLAYIAIVGAVGDMQENDGVFHGMN 180

Query: 182 LDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNNNF 241
           LDIIEDGKSLGILEV+KELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRN  F
Sbjct: 181 LDIIEDGKSLGILEVRKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNKGF 240

Query: 242 NPDKRYWELSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEAREF 301
           +PDK+YWELS+E++++LH+ LVIHMIKHGAGKEEID+LIGDVVISPLYPQGDPRHEAREF
Sbjct: 241 DPDKKYWELSDEDRKKLHDYLVIHMIKHGAGKEEIDKLIGDVVISPLYPQGDPRHEAREF 300

Query: 302 ATLLNATGRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEGE 361
           ATLLNATGRLNLGNLGVAVCLGDEEAF++AMKMVEEYK+EQIEARKWL+QNW  EVWEGE
Sbjct: 301 ATLLNATGRLNLGNLGVAVCLGDEEAFRKAMKMVEEYKKEQIEARKWLLQNWEKEVWEGE 360

Query: 362 HVYVLYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALE 421
           +VY+LYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALE
Sbjct: 361 NVYILYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALE 420

Query: 422 KGYHLGEALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQVKGSENQ 478
           +GYHLGEAL+KAAE+IGGEGGGHAIAAGIRVPKAR AEFRKLIDK+LGEQVK +E+Q
Sbjct: 421 RGYHLGEALRKAAEIIGGEGGGHAIAAGIRVPKARFAEFRKLIDKLLGEQVKKNEDQ 477


>gi|11498342 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7450705|pir||G69341 conserved hypothetical protein
           AF0735 - Archaeoglobus fulgidus
           >gi|2649876|gb|AAB90503.1| (AE001054) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 457
           
 Score =  292 bits (740), Expect = 5e-78
 Identities = 176/475 (37%), Positives = 278/475 (58%), Gaps = 32/475 (6%)

Query: 12  EKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFHVSIVKQVSEDL 71
           E +K A +LA   I     + +++H DADGIT+  I   +L R G +  +  VKQ+ E  
Sbjct: 3   ELLKRAAELAG-RILKNEEVLVVTHIDADGITAGTIAHTSLLRAGVESGIRFVKQLDESE 61

Query: 72  VRQLKDEDYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPPENVELPEKH--ILVNPVQ 129
           +  +KDE+  V+ F+D+GSG L++    L      I DHH      LP+ H  + +NP  
Sbjct: 62  IEAIKDENTFVW-FTDIGSGVLNM----LDGIEFAITDHH------LPQSHHPMQLNPHD 110

Query: 130 FGANSVRDLSGSGVCYFFARELNER---------NKDLAYIAIVGAVGDMQEND-GVFHG 179
           FG +   +LSG+   Y  ++ L            N DL  I+IVGAVGD+Q++  G+  G
Sbjct: 111 FGYDGAFELSGATTTYLVSKYLRNGRTLFDYENDNSDLLPISIVGAVGDLQDSRWGMLKG 170

Query: 180 MNLDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNN 239
           +N +I+ +G     + V ++LR FG++TRP+ +ML Y ++P IP IT +E   +  L + 
Sbjct: 171 LNREIVMEGLRKKQIAVLRDLRFFGKQTRPVAKMLEYNSDPFIPGITANESGVLNLLESL 230

Query: 240 NFNPDKRYWELSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEAR 299
             +P  R+ +L  E+KRR+ + LV   +  G     I R++G+  I     +G  + +A 
Sbjct: 231 GVDPWVRWIDLEIEKKRRVVSALVSLAMDFGIPYTSILRMVGECYILVNEEEGTEKRDAM 290

Query: 300 EFATLLNATGRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWE 359
           EF+TLLNAT R N   +G+ VCLGDE A++RA  +++ +++   +  +++ +    E+  
Sbjct: 291 EFSTLLNATARYNEAEVGMGVCLGDERAYRRARTLLQNHRKNLSDGIRFVDREGIEEL-- 348

Query: 360 GEHVYVLYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKA 419
            E++   + G NI DT+VGI A M    G  N EKP+I FA++D+    +K SAR T + 
Sbjct: 349 -ENIQYFHAGSNIPDTIVGIVAGMCFYKG--NREKPIIAFAESDKG---VKVSARATYRL 402

Query: 420 LEKGYHLGEALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQVKG 474
           +E+G HL +ALK+AAE +GG GGGH++AAG  +P+ R  EF KL+D+I+GEQ++G
Sbjct: 403 VERGVHLAKALKRAAEAVGGVGGGHSVAAGATIPEGREDEFLKLLDRIIGEQLRG 457


>pir||E69056 conserved hypothetical protein MTH1422 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622535|gb|AAB85899.1| (AE000904) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 457
           
 Score =  260 bits (658), Expect = 2e-68
 Identities = 157/464 (33%), Positives = 259/464 (54%), Gaps = 30/464 (6%)

Query: 11  LEKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFHVSIVKQVSED 70
           L++  EA  +   H+E G+ IRIISH DADG+++A +VA+A++     FH+SI+ ++ ++
Sbjct: 18  LKRGAEASKVLEEHLERGNIIRIISHNDADGLSAAGVVARAISSMNGQFHISILSRLKKE 77

Query: 71  LVRQLKDEDYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPPENVELPEKHILVNPVQF 130
            +++L  E Y +F F D+GS  L  I     D  VI+ DHH P   E     + +NP   
Sbjct: 78  FIKKLSGEKYSLFFFCDMGSAYLEEISRLKGD--VIVADHHQPSESEAGPHVVHINPHLH 135

Query: 131 GANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGMNLDIIEDGKS 190
           G +  RDLS SG  Y   R LN +    A +A+VGA+GDMQ  DG F G N  I+E+   
Sbjct: 136 GLDGSRDLSASGTAYLATRLLNRKT---APLALVGALGDMQYTDG-FTGANRFIMEEAVE 191

Query: 191 LGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNNNFNPDKRYWEL 250
            G+L+V  +L+L  R T PLY+ +AY  NP +P +TGD   ++ +L N   +   +Y +L
Sbjct: 192 EGVLQVHSDLKLASRYTEPLYRSIAYTFNPALPGLTGDMEASMGFLENIGVSYGVKYPDL 251

Query: 251 SEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRH--EAREFATLLNAT 308
           S EE+  L              ++E+ R I   +   ++   + R+  +  + A +L+A 
Sbjct: 252 SPEERDVL--------------RDELTR-INPEIFGEVFTSREFRNIGDLSDIAGVLDAC 296

Query: 309 GRLNLGNLGVAVCLGDEE-AFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEGEHVYVLY 367
           G+     +G+ +CLG+ E A   A+++ + Y+ E ++   W+ +  ++ +   E++  +Y
Sbjct: 297 GKNRKYGIGIGLCLGEREGALDVALELQKNYREELVKGLAWIRREGSTTL---ENLQYIY 353

Query: 368 VGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALEKGYHLG 427
                   ++G  AS++++  + +P+ P++  +  D+    +K SARTT  A+E+G +LG
Sbjct: 354 SEDKAFKGIMGTIASISLSLKILDPDIPLLGLSRMDQH---VKVSARTTRPAVERGVNLG 410

Query: 428 EALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQ 471
            AL+ AA   GG GGGH IAAG  VP   +  F +L+D+ILG Q
Sbjct: 411 VALRDAAASFGGTGGGHDIAAGAMVPYRDMESFLQLVDEILGTQ 454


>gb|AAG20439.1| (AE005116) Vng2333c [Halobacterium sp. NRC-1]
           Length = 475
           
 Score =  247 bits (623), Expect = 3e-64
 Identities = 155/454 (34%), Positives = 236/454 (51%), Gaps = 15/454 (3%)

Query: 30  TIRIISHRDADGITSAAIVAKALAREGADFHVSIVKQVSEDLVRQLKDEDYKVFIFSDLG 89
           ++ + SH DADG+TSA I + AL R      V   KQ+ ++ +  +   ++   +F+D G
Sbjct: 27  SVLVASHIDADGLTSAGIASTALERAAIPHEVVFSKQLDDEEIADIAGANHGTVLFTDFG 86

Query: 90  SGSLSIIKEHLK--DRTVIILDHHPPENVELPEKHILVNPVQFGANSVRDLSGSGVCYFF 147
           SG L  I  H +  + T +I DHH P      + H+  NP+  G +   +LSG+G  Y  
Sbjct: 87  SGQLDAITAHERAGEFTPVIADHHQPAENAATDYHL--NPLLEGVDGGTELSGAGATYVL 144

Query: 148 ARELNERNK-DLAYIAIVGAVGDMQENDGVFHGMNLDIIEDGKSLGILEVKKELRLFGRE 206
           AR L   +  DLA +A+VGAVGD Q  DG   G N  +  DG   G+L+    L L+G +
Sbjct: 145 ARALLGTDATDLAALAVVGAVGDRQTVDGELVGANTRVAADGVEAGVLDTATGLALYGTQ 204

Query: 207 TRPLYQMLAYATNPEIPEITGDERKAIEWLR----NNNFNPDKRYW-ELSEEEKRRLHNL 261
           TRPL ++L YA+   IP IT D + AI +L     + +   D R W  L  +E+R + + 
Sbjct: 205 TRPLPRLLEYASELYIPGITNDHQGAIRFLDALDVDLHDGGDWRTWASLDHDERRTVVSA 264

Query: 262 LVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEAREFATLLNATGRLNLGNLGVAVC 321
           LV   ++ G    E+  L+G          G    +A EFATLLNAT R    ++G+AVC
Sbjct: 265 LVKRAVRTGVPSAEVTTLVGTTYTLTDEEPGTALRDASEFATLLNATARYERADVGLAVC 324

Query: 322 LGDE-EAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEGEHVYVLYVGKNIRDTLVGIA 380
           +GD  +A +RA  + EE+++   E   W+ +     V   + +   +    IR+T+VGI 
Sbjct: 325 MGDRGDALERARSLREEHRQTLSEGVSWVTR---EGVTVEDDLQWFHADDRIRETIVGIV 381

Query: 381 ASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALEKGYHLGEALKKAAEMIGGE 440
           A MA++      ++P++ FA  D++P  +K SAR T + ++ G  L   +++AA   GG+
Sbjct: 382 AGMALSGDETENDRPIVAFAAKDDEP-AVKVSARATARVVDAGVDLAVVVREAAAAAGGD 440

Query: 441 GGGHAIAAGIRVPKARLAEFRKLIDKILGEQVKG 474
           GGGH  AAG  VP      F      +L  Q  G
Sbjct: 441 GGGHEAAAGATVPAGNERAFLDAASGVLAAQRGG 474


>emb|CAC11667.1| (AL445064) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 491
           
 Score =  235 bits (594), Expect = 7e-61
 Identities = 151/468 (32%), Positives = 255/468 (54%), Gaps = 43/468 (9%)

Query: 31  IRIISHRDADGITSAAIVAKALAREGADFHVSIVKQVSEDLVRQLKDEDYKVFIFSDLGS 90
           I I+SH DADG++S+AI   +L R G +  V  +K +   +++ L    +K F+  DLGS
Sbjct: 34  IIIVSHIDADGLSSSAIAKTSLDRAGIENEVVFIKNLDPMVLKGLPP-GFKWFV--DLGS 90

Query: 91  GSLSIIKEHLKDRTVIILDHHPPENVELP----------------EKHILVNPVQFGANS 134
           GS+++I++   +   +I DHH P+  ++                 E    VNP   G N 
Sbjct: 91  GSMNMIRD--ANIECLITDHHLPDQFDIDLEFRRDIVKFLQHSDFEGITQVNPHMVGLNG 148

Query: 135 VRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQE-NDGVFHGMNLDIIEDGKSLGI 193
             ++SGSG  +  +  +++ N D+   AIVGA+GD+Q+ N GV  G+N   I+ G  +G+
Sbjct: 149 SYEISGSGTTFLVSMAMSDENADMVVPAIVGAIGDVQDANSGVLEGINRSFIDLGVDIGL 208

Query: 194 LEVKKELRLFGRETRPLYQMLAYATN--PEIPEITGDERKAIEWLRNNNFNPDKR--YWE 249
           + VK +LR FGR TRPL + L   ++  P +  + G   + + +L     + D+   Y +
Sbjct: 209 ISVKNDLRFFGRATRPLSKFLELGSDRIPGVSNLRGSASRMLRYLNVPLKDGDRFRVYND 268

Query: 250 LSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEAREFATLLNATG 309
           LSE+EK R+   ++  +I   AG +++D + G+  + P      P ++A+EFATLLN+ G
Sbjct: 269 LSEDEKTRIRTEILKRLII--AGIDDLDSIFGETYVFPKEDARSPTYDAKEFATLLNSCG 326

Query: 310 RLNLGNLGVAVCLGDE-EAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEG----EHVY 364
           R + G  G+ V  GD  E++ +A+ ++  ++R+       L+  +N  + EG     ++ 
Sbjct: 327 RYDEGLTGLKVAAGDRGESYSKALSLMASHRRK-------LVNGYNHIMAEGIKSLNNID 379

Query: 365 VLYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALEKGY 424
             Y GK+I + +VGI A+M + A   +  +P+I  AD+D  P  +K S R  +  L+ G 
Sbjct: 380 YFYAGKDINENIVGIIANMIL-ARDPDTVRPLITMADSD--PGTVKASVRANKTFLKIGI 436

Query: 425 HLGEALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQV 472
            L +  ++AA  +GG GGGH +AAG  +P  R+ +F   ID  +G+ V
Sbjct: 437 DLADLFRRAAATVGGVGGGHDLAAGANIPAGRMNDFLNFIDLEIGKAV 484


>gi|11498306 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7450702|pir||C69337 conserved hypothetical protein
           AF0699 - Archaeoglobus fulgidus
           >gi|2649915|gb|AAB90540.1| (AE001056) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 438
           
 Score =  214 bits (540), Expect = 1e-54
 Identities = 151/458 (32%), Positives = 246/458 (52%), Gaps = 39/458 (8%)

Query: 12  EKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFHVSIVKQVSEDL 71
           E+ + A DL   H      IRI +H DADGI++ AI+AKAL + G  FH++ +K ++E  
Sbjct: 12  ERARRAADLVARH----DFIRIYTHHDADGISAGAIIAKALLKAGKAFHITFLKGLNEPF 67

Query: 72  VRQLKDEDYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPPENVELPEKHIL-VNPVQF 130
               + E  ++ +F+D+GSG   +I +   D  V+ILDHH P     P++++  VNP   
Sbjct: 68  ----EYEQGELLLFADMGSGYADLISQ--VDTDVVILDHHIPNGEIRPKRNLAHVNPHLV 121

Query: 131 GANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGMNLDIIEDGKS 190
           G +   +LS SGVCYFFA EL  RN++LA +A++GA+GD Q       G N +I+ +G  
Sbjct: 122 GMDGTFELSASGVCYFFANELG-RNRELASVALIGALGDKQR----MVGGNEEILRNGLE 176

Query: 191 LGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNNNFNPDKRYWEL 250
            G++E +K + L   + R    +L  +  P + +  G E +  E+L     + DK + EL
Sbjct: 177 AGVVEERKGVSLPSGKLR---DVLVQSLEPFL-DFYGKEEELEEFLEKARLDGDKEFDEL 232

Query: 251 SEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGD-VVISPLYPQGDPRHEAREFATLLNATG 309
           S+EE RRL + +V+ ++K  A      +++G  +++  L  +      A     ++N+ G
Sbjct: 233 SDEEIRRLADAIVLRLLKMNAYTGIFSQIVGKRLILKNLLIKN-----AVTAVDVVNSCG 287

Query: 310 RLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEGEHVYVLYVG 369
           R+   +  +A+ LGD EA  RA+++  EY  + +E  K     W +EV EG  +  L + 
Sbjct: 288 RIGAMSTALAMLLGDVEAMNRAIRINNEYVIQTLEELK----KWRNEVKEGFCIRYLVME 343

Query: 370 KNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALEKGYHLGEA 429
             +  + +    S  +       +KP+IV    +E     K SART E AL +   L E 
Sbjct: 344 NGLSASPIATIFSRYVFT-----DKPLIVVNIKNE---YAKVSARTNE-ALAERVDLAEV 394

Query: 430 LKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKI 467
           ++ AAE +GG GGGH +AAG  +   ++ EF K +D++
Sbjct: 395 MRLAAEKVGGRGGGHRVAAGANITPDKVEEFLKEVDRL 432


>sp|Q58241|Y831_METJA HYPOTHETICAL PROTEIN MJ0831 >gi|2128533|pir||G64403 hypothetical
           protein MJ0831 - Methanococcus jannaschii
           >gi|1591518|gb|AAB98830.1| (U67526) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 432
           
 Score =  207 bits (521), Expect = 2e-52
 Identities = 149/478 (31%), Positives = 265/478 (55%), Gaps = 55/478 (11%)

Query: 4   LMDKKGFLEKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFHVSI 63
           +M+K   +EKV +A+   +     G+ IR+I+H D DG++S  I+AK L R    FH+++
Sbjct: 1   MMEKLKEIEKVTKAIK-EKILNHYGY-IRVITHHDTDGLSSGGILAKMLMRTNKLFHLTV 58

Query: 64  VKQVSEDLVRQLKDE---DYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPP--ENVEL 118
           V+ +S++++ +L  E   +  +FIF+D+GSG +  I +H  +   IILDHHPP  ++  +
Sbjct: 59  VEHLSKEVIEKLAKENEVNKPLFIFADMGSGQIEEIIKH--NFNAIILDHHPPVIKDSFI 116

Query: 119 PEKHILVNPVQFGANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFH 178
            E  I +NP  FG +  R+++ SGVCY  ARE      DL+ +AIVG +GDMQ N     
Sbjct: 117 NENIIQLNPHIFGVDGSREITASGVCYLVAREFG--YYDLSVLAIVGIIGDMQYNP--LL 172

Query: 179 GMNLDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRN 238
           G+N  I+ + +    +++  ++ ++      +Y+ +AY T P IP++   E KA ++L++
Sbjct: 173 GLNKFIVNEAREYRYVKIMNDI-VYNIYDVEIYKAIAYCTKPYIPDL-ASEGKAFKFLKD 230

Query: 239 NNFNPDKRYWELSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEA 298
              +P+K+  +L + +K++L + ++    K       I+ L+ D  +          H+ 
Sbjct: 231 IGIDPNKK--QLDDTDKKKLLSAIIFKYPK-------IENLLIDRYLI--------EHKV 273

Query: 299 RE---FATLLNATGRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNS 355
           R+    + +LNA GR  L  +G+ +CL D+E  K   +++ EYK+  I   K      + 
Sbjct: 274 RDAFLLSEMLNAVGRNGLFAVGIGICLEDDECIKIGNQILWEYKKNLINELK------SV 327

Query: 356 EVWEGEHVYVLYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSART 415
           ++ +  ++Y  + GK     ++GI AS+ ++      +KPVI +     + ++ K SAR 
Sbjct: 328 KLKKLNNIY-YFEGKK---GMIGIIASILVD------DKPVIGY---HIEGDIAKFSARG 374

Query: 416 TEKALEKGYHLGEALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQVK 473
               + +G +L  A+  A E  GG GGGH +A+G  V K ++ EF K +D+I+GEQ++
Sbjct: 375 NRDLVNRGLNLSVAMAVAKE-FGGNGGGHDVASGAVVSKDKVQEFLKRVDEIIGEQLR 431


>sp|Q58387|RECJ_METJA SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ
           >gi|2128614|pir||A64422 conserved hypothetical protein
           MJ0977 - Methanococcus jannaschii
           >gi|1591640|gb|AAB98980.1| (U67540) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 469
           
 Score =  201 bits (507), Expect = 1e-50
 Identities = 145/452 (32%), Positives = 235/452 (51%), Gaps = 25/452 (5%)

Query: 31  IRIISHRDADGITSAAIVAKALAREGADFHVSIVKQVSEDLVRQLKDEDYKVFIFSDLGS 90
           I I++H D DG+TS AI+ K   R   D     +KQ++ + +  +  +DY + IF+DLGS
Sbjct: 22  ILIVTHIDTDGLTSRAILQKLAERLNLDADFMFLKQITIETINDIPFKDYDLIIFADLGS 81

Query: 91  GSLSIIKEHL-------KDRTVIILDHHPPENVELPEKHILVNPVQFGANSVRDLSGSGV 143
           G L +IKE L       K   +IILDHH PE +++P+  I +NP+   A S  ++ G+GV
Sbjct: 82  GQLKMIKEKLDELNLSDKRDKIIILDHHQPEEIKIPKTIIHINPLTI-AKSGAEICGAGV 140

Query: 144 CYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGMNLDIIEDGKSLGILEVKKELRLF 203
            Y FA+ +N    DLA  A++GAVGD+Q  +G   G+N  I+ D    G ++VK +L+++
Sbjct: 141 SYLFAKAINNDWIDLAKYAVLGAVGDIQNIEGKLIGLNRKILCDAIMNGDVKVKTDLQMY 200

Query: 204 GRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNNN------FNPDKRYWELSEEEKRR 257
           GR+TRPL+  + Y  +    ++  ++ K I+++++ N       NP  R  E+  E KR 
Sbjct: 201 GRQTRPLFVSMRYWADVR-TDLLNNDSKIIKYIQSINKKYDIEINPTMRLAEIPFEHKRI 259

Query: 258 LHNLLVIHMIKH--GAGKEEIDRLI-GDVVISPLYPQGDPRHEAREFATLLNATGRLNLG 314
           + N L+I  + +        I ++I G+V        G P  +  EF+T +NA  R    
Sbjct: 260 IGNELLIKCLNYVPNHWTPYIPKVIFGEVYEFRGEEFGSPLRDLEEFSTCINACSRYGDY 319

Query: 315 NLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEGEHVYVLYVGKNIRD 374
              + V +GD + + R  KM+   ++ +   R+ L    N      +  +  +    I  
Sbjct: 320 ETALNVLMGDRDKYYR--KMLSNLRKHRNNLREALEHVKNDVEIIQKDRFQYFETDKIMS 377

Query: 375 TLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTE-KALEKGYHLGEALKKA 433
            +VGI A M+ +    +  KP  +FA T ED N  K SAR  +     +  +L +A+K A
Sbjct: 378 NIVGIVAGMSYSIEEVDWMKP--IFAIT-EDENGYKVSARCPKLLCFAEDVNLAKAIKYA 434

Query: 434 AEMIGGEGGGHAIAAGIRVPKARLAEFRKLID 465
           +E + G GGGH  A G  +P  +  EF K ++
Sbjct: 435 SEKVNGSGGGHKFACGAYIPDNK-REFIKYLE 465


>pir||B69086 conserved hypothetical protein MTH164 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2621206|gb|AAB84670.1| (AE000804) single-stranded
           DNA exonuclease RecJ related protein [Methanobacterium
           thermoautotrophicum]
           Length = 450
           
 Score =  187 bits (471), Expect = 2e-46
 Identities = 137/460 (29%), Positives = 227/460 (48%), Gaps = 34/460 (7%)

Query: 25  IELGHTIRIISHRDADGITSAAIVAKALAREGADFHVSIVKQVSEDLVRQLKDEDYKVFI 84
           +E   T+ + SH D DGIT+A +++K L R   D  V I+  ++E    +L  +   + I
Sbjct: 2   VESSETVTVYSHTDCDGITAATVLSKVLERLDMDHEVRIIN-INEVPEVELSSD---LTI 57

Query: 85  FSDLGSGSLSIIKEHLKDRT-VIILDHHPPE---NVELPEKHIL-VNPVQFGANSVRDLS 139
           FSDLGSG    + E+LK  + V+ILDHHPP    N   P    L +NP+ +G +    +S
Sbjct: 58  FSDLGSGQR--VHENLKSNSRVLILDHHPPVRKMNFTAPSGDFLEINPIFYGMDGSTHVS 115

Query: 140 GSGVCYFFARELNERNKDLAYIAIVGAVGDMQEND-GVFHGMNLDIIEDGKSLGILEVKK 198
           G G+ Y  ARE   R  DL+++ ++ AVGDMQ    G   G+N DI++D  S G +E + 
Sbjct: 116 GGGLTYLLAREFGYR--DLSWMGLLAAVGDMQNITLGKMEGLNRDILQDSVSEGQIECQS 173

Query: 199 ELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRN-----NNFNPDKRYWELSEE 253
           +L ++GR TRPL   L+Y  +  +P  T +  + I  L+N      N    ++  +L+++
Sbjct: 174 DLTIYGRHTRPLVNALSYFGDVTLPT-TNNTNECIARLKNLGIPLKNGESQRKLCDLTDD 232

Query: 254 EKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRH-----EAREFATLLNAT 308
           EKR+L N +   M+      E   R +  +++  +Y            +  EF+T +NA 
Sbjct: 233 EKRKLFNEIYRMMVSEVP--ERYHRYLPRLILGEVYELSSEERYTVFRDLSEFSTAVNAC 290

Query: 309 GRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEGEHVYVLYV 368
            R +   L + +  GD +  +  ++ V    R  +     L +  + E+         + 
Sbjct: 291 NRNSRWKLAMEIIGGDRKGKRDELEDVLRDHRTYLAVT--LDEIMDEELIRDMENLQYFH 348

Query: 369 GKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALEKGYHLGE 428
              +   +VG  A M +  G  +  +P+I   +T +    +K S R +      G H G 
Sbjct: 349 APGVNTAVVGTVAGMLL--GYGDWRRPMIGLGETADG---LKVSLRCSRLLAFDGIHFGS 403

Query: 429 ALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKIL 468
            +++ AE +GG GGGHA A G  +P  R  EF +L+D+ +
Sbjct: 404 IMRRVAEKVGGSGGGHATACGAYIPSEREREFLELLDRAI 443


>gi|11497695 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7482966|pir||C69259 conserved hypothetical protein
           AF0075 - Archaeoglobus fulgidus
           >gi|2650572|gb|AAB91152.1| (AE001101) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 413
           
 Score = 79.2 bits (192), Expect = 9e-14
 Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 5/192 (2%)

Query: 10  FLEKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFHVSIVKQVSE 69
           F E V+ A +  R +   G  + ++ H DADG+ S A++ K     G +  +  +++V  
Sbjct: 12  FFEWVERAANYIRSYA--GGGVTVVHHNDADGLCSGALLKKLCEYCGFEAELICIEKVYP 69

Query: 70  DLVRQLKDEDYKVFIFSDLGSGSLSII-KEHLKDRTVIILDHHPPENVELPEKHILVNPV 128
            +V ++      + I++DLG  +  +I K +     V+I+DHHP ++++    H+L +P 
Sbjct: 70  AVVEKIHSSRDGMIIYTDLGGLAADMIDKINAGKSMVLIIDHHPAKDIDSDYVHVL-DPE 128

Query: 129 QFGANSVRDLSGSGVCYFFAREL-NERNKDLAYIAIVGAVGDMQENDGVFHGMNLDIIED 187
             G +    +S S + Y F R +  E  K  AYIA++G+VGD  +  G   G +   +E+
Sbjct: 129 LAGISGDVFVSASSLNYIFFRAVAGEEAKKYAYIAVLGSVGDYHDRSGGVLGFDRFALEE 188

Query: 188 GKSLGILEVKKE 199
               G ++V+ E
Sbjct: 189 AIDEGQVKVRFE 200


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.138    0.394 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182999423
Number of Sequences: 2977
Number of extensions: 8097333
Number of successful extensions: 23089
Number of sequences better than 1.0e-10: 11
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 23032
Number of HSP's gapped (non-prelim): 11
length of query: 481
length of database: 189,106,746
effective HSP length: 58
effective length of query: 423
effective length of database: 154,394,500
effective search space: 65308873500
effective search space used: 65308873500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 167 (69.5 bits)