BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0035 (rps3AE) DE:SSU ribosomal protein S3AE (rps3AE)
(200 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75192 ssu ribosomal protein s3ae (rps3ae) PAB0035 - Pyroco... 395 e-109
sp|O57803|RS3A_PYRHO 30S RIBOSOMAL PROTEIN S3AE >gi|7441119|pir|... 380 e-105
gi|11499901 SSU ribosomal protein S3AE (rps3AE) [Archaeoglobus f... 217 8e-56
sp|Q9YCV8|RS3A_AERPE 30S RIBOSOMAL PROTEIN S3AE >gi|7441122|pir|... 195 3e-49
gb|AAK41041.1| SSU ribosomal protein S3AE (rps3AE) [Sulfolobus s... 194 6e-49
sp|Q9UXD4|RS3A_SULSO 30S RIBOSOMAL PROTEIN S3AE >gi|6015730|emb|... 194 6e-49
sp|O27630|RS3A_METTH 30S RIBOSOMAL PROTEIN S3AE >gi|7441121|pir|... 180 1e-44
sp|P54059|RS3A_METJA 30S RIBOSOMAL PROTEIN S3AE >gi|2826354|gb|A... 169 3e-41
pir||D64422 ribosomal protein S3a - Methanococcus jannaschii 166 2e-40
emb|CAC12292.1| (AL445066) 30S ribosomal protein S3a related pro... 137 1e-31
gb|AAG19253.1| (AE005021) 30S ribosomal protein S3E; Rps3e [Halo... 121 7e-27
pir||T05287 ribosomal protein S3a, cytosolic - Arabidopsis thali... 108 4e-23
gb|AAD57005.1|AC009465_19 (AC009465) putative 40S ribosomal prot... 106 2e-22
dbj|BAA89498.1| (AB029635) cyc07 [Daucus carota] 105 4e-22
sp|P33444|RS3A_CATRO 40S RIBOSOMAL PROTEIN S3A (CYC07 PROTEIN) 104 8e-22
pir||JQ0939 ribosomal protein S3a - Madagascar periwinkle >gi|21... 104 8e-22
dbj|BAA05057.1| (D26058) This gene is specifically expressed at ... 103 2e-21
sp|P49397|RS3A_ORYSA 40S RIBOSOMAL PROTEIN S3A (CYC07 PROTEIN) >... 101 7e-21
emb|CAB39062.1| (AL034559) 40S Ribosomal protein S3A [Plasmodium... 101 9e-21
sp|P49396|RS3A_BRARA 40S RIBOSOMAL PROTEIN S3A (S PHASE SPECIFIC... 99 3e-20
pir||T38219 40s ribosomal protein S1B - fission yeast (Schizosa... 99 3e-20
sp|Q09781|RS3A_SCHPO 40S RIBOSOMAL PROTEIN S3AE-A (S1-A) >gi|213... 99 4e-20
sp|P49198|RS3A_HELAN 40S RIBOSOMAL PROTEIN S3A >gi|7441118|pir||... 98 6e-20
gi|6323577 Ribosomal protein S1B (rp10B); Rps1bp [Saccharomyces ... 96 2e-19
gi|6323474 Ribosomal protein S1A (rp10A); Rps1ap [Saccharomyces ... 96 2e-19
sp|P49395|RS3A_APLCA 40S RIBOSOMAL PROTEIN S3A (LYSINE-RICH PROT... 96 4e-19
pir||T02874 ribosomal protein S3a, cytosolic - rice >gi|4079800|... 92 3e-18
pir||JC5250 ribosomal protein S3a, cytosolic [validated] - rat 91 1e-17
sp|P48154|RS3A_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S3A >gi|6306... 90 1e-17
pir||PC4158 ribosomal protein S3a - cat (fragment) >gi|950113|gb... 90 1e-17
gi|8394218 ribosomal protein S3a [Mus musculus] >gi|3122836|sp|P... 90 1e-17
gi|4506723 ribosomal protein S3A [Homo sapiens] >gi|11446189|ref... 90 1e-17
gi|8394221 ribosomal protein S3a [Rattus norvegicus] >gi|1350987... 90 1e-17
gb|AAA35682.1| (L13802) ribosmal protein small subunit [Homo sap... 90 1e-17
sp|P40910|RS3A_CANAL 40S RIBOSOMAL PROTEIN S3AE (S1) >gi|1076943... 90 1e-17
sp|O73813|RS3A_ORYLA 40S RIBOSOMAL PROTEIN S3A (V-FOS TRANSFORMA... 89 3e-17
sp|O43999|RS3A_EIMTE 40S RIBOSOMAL PROTEIN S3A >gi|2792508|gb|AA... 89 5e-17
gb|AAC62117.1| (AF034971) ribosomal protein S3a [Drosophila mela... 88 8e-17
sp|P55830|RS3A_DROME 40S RIBOSOMAL PROTEIN S3A (C3 PROTEIN) 88 8e-17
gb|AAD23952.1|AF093109_1 (AF093109) ribosomal protein S3 [Tortul... 84 1e-15
emb|CAA71201.1| (Y10115) ribosomal protein S3a [Drosophila melan... 82 5e-15
sp|P52813|RS3A_ANOGA 40S RIBOSOMAL PROTEIN S3A (C3 PROTEIN) >gi|... 78 7e-14
>pir||H75192 ssu ribosomal protein s3ae (rps3ae) PAB0035 - Pyrococcus abyssi
(strain Orsay) >gi|5457500|emb|CAB48991.1| (AJ248283)
SSU ribosomal protein S3AE (rps3AE) [Pyrococcus abyssi]
Length = 200
Score = 395 bits (1004), Expect = e-109
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MMAAKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDITGD 60
MMAAKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDITGD
Sbjct: 1 MMAAKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDITGD 60
Query: 61 FLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLR 120
FLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLR
Sbjct: 61 FLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLR 120
Query: 121 VMAMVIAARRIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIY 180
VMAMVIAARRIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIY
Sbjct: 121 VMAMVIAARRIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIY 180
Query: 181 PLKKAEIRKIKVLGEPEVAA 200
PLKKAEIRKIKVLGEPEVAA
Sbjct: 181 PLKKAEIRKIKVLGEPEVAA 200
>sp|O57803|RS3A_PYRHO 30S RIBOSOMAL PROTEIN S3AE >gi|7441119|pir||A71225 probable
ribosomal protein S3a - Pyrococcus horikoshii
>gi|3256445|dbj|BAA29128.1| (AP000001) 199aa long
hypothetical 30S ribosomal protein S3a [Pyrococcus
horikoshii]
Length = 199
Score = 380 bits (966), Expect = e-105
Identities = 189/199 (94%), Positives = 194/199 (96%)
Query: 1 MMAAKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDITGD 60
MMAAK+RV+AAKDKWKLKQWY+IYAPDFFGGVEVGLTPADDPEKV+NRVVEVTLKDITGD
Sbjct: 1 MMAAKKRVTAAKDKWKLKQWYIIYAPDFFGGVEVGLTPADDPEKVMNRVVEVTLKDITGD 60
Query: 61 FLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLR 120
F KGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGY+LR
Sbjct: 61 FTKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYRLR 120
Query: 121 VMAMVIAARRIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIY 180
VMAM IA RRIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKE KKIY
Sbjct: 121 VMAMAIAMRRIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEGKKIY 180
Query: 181 PLKKAEIRKIKVLGEPEVA 199
PLKKAEIRKIKVLGEPE A
Sbjct: 181 PLKKAEIRKIKVLGEPEAA 199
>gi|11499901 SSU ribosomal protein S3AE (rps3AE) [Archaeoglobus fulgidus]
>gi|6647802|sp|O27964|RS3A_ARCFU 30S RIBOSOMAL PROTEIN
S3AE >gi|7441120|pir||H69539 SSU ribosomal protein S3AE
(rps3AE) homolog - Archaeoglobus fulgidus
>gi|2648199|gb|AAB88936.1| (AE000944) SSU ribosomal
protein S3AE (rps3AE) [Archaeoglobus fulgidus]
Length = 211
Score = 217 bits (547), Expect = 8e-56
Identities = 107/200 (53%), Positives = 142/200 (70%), Gaps = 2/200 (1%)
Query: 2 MAAKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDITGDF 61
MA KRR + KDKW LK+W+ + AP++FG E+G TPADD KV+ R VE TL ++T D+
Sbjct: 1 MARKRRAARVKDKWTLKKWFTLIAPEYFGMAELGETPADDASKVVGRTVETTLAELTNDY 60
Query: 62 LKGHV--KLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKL 119
+ KL F+VY V G NAYTKF +L R Y+ SL RRRT++I+ I ++TT DGYKL
Sbjct: 61 SNQNTYKKLIFKVYRVAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKL 120
Query: 120 RVMAMVIAARRIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKI 179
RV ++V RR +TSQ+RAIR IM++I+ +KA LNF F+ E V GK+ AEI K AKKI
Sbjct: 121 RVKSVVFTVRRCKTSQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEIYKNAKKI 180
Query: 180 YPLKKAEIRKIKVLGEPEVA 199
YP+++ EIRKI++L EP A
Sbjct: 181 YPIRRVEIRKIELLAEPAEA 200
>sp|Q9YCV8|RS3A_AERPE 30S RIBOSOMAL PROTEIN S3AE >gi|7441122|pir||E72585 probable
ribosomal protein S3 APE1154 - Aeropyrum pernix (strain
K1) >gi|5104825|dbj|BAA80139.1| (AP000061) 221aa long
hypothetical 30S ribosomal protein S3 [Aeropyrum pernix]
Length = 221
Score = 195 bits (491), Expect = 3e-49
Identities = 96/189 (50%), Positives = 130/189 (67%), Gaps = 4/189 (2%)
Query: 12 KDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDITGDFLKGHVKLYFQ 71
+D W+LK+W+ + AP FG +G TPADDP+K++ RV+E TL DITGD+ HVK+YFQ
Sbjct: 14 RDTWRLKKWFKVVAPPLFGETVLGTTPADDPDKLIGRVMETTLFDITGDYSYVHVKMYFQ 73
Query: 72 VYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMVIAARRI 131
V V+G AYT+FKG +L R YIR L RR+++++ GIFN+ TKDGY LRV AM +R
Sbjct: 74 VVRVEGDTAYTRFKGHELLRDYIRGLTRRKSSKVTGIFNVWTKDGYGLRVTAMAFTRQRC 133
Query: 132 QTSQERAIRKIMQEIIYKKAEELNFKDFVLEAV----NGKIAAEIAKEAKKIYPLKKAEI 187
+TSQ+ AIRK+MQEI+ +KA E + + V G +A I + A+KIYPL+K EI
Sbjct: 134 KTSQKSAIRKVMQEIVEQKARESTLDELIQLMVFSDHEGSLAYLIDESARKIYPLRKVEI 193
Query: 188 RKIKVLGEP 196
K K+L P
Sbjct: 194 AKSKLLWVP 202
>gb|AAK41041.1| SSU ribosomal protein S3AE (rps3AE) [Sulfolobus solfataricus]
Length = 208
Score = 194 bits (488), Expect = 6e-49
Identities = 95/188 (50%), Positives = 131/188 (69%)
Query: 10 AAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDITGDFLKGHVKLY 69
A KDKWK+K+WY + P FG V +G TPA D + + R VE TL D+TGDF + +V LY
Sbjct: 7 AIKDKWKMKKWYSVITPKAFGEVSLGSTPAYDITQTIGRRVETTLYDLTGDFSQVYVHLY 66
Query: 70 FQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMVIAAR 129
F++ +G T+F G +L+R Y+RSL+RR++++I+ IF++TTKDGY +RV +V+
Sbjct: 67 FKIIGNEGDRLITRFVGHELSRDYLRSLIRRKSSKINSIFDVTTKDGYVVRVKGLVLTTY 126
Query: 130 RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPLKKAEIRK 189
+ SQ+ AIRKI+ E + KKA EL+F DF E V G++A EI + AKKIYPL+KAEI K
Sbjct: 127 KCHQSQKTAIRKIINETVSKKASELSFDDFTQEVVFGRLANEIFEAAKKIYPLRKAEIEK 186
Query: 190 IKVLGEPE 197
KVL PE
Sbjct: 187 TKVLKVPE 194
>sp|Q9UXD4|RS3A_SULSO 30S RIBOSOMAL PROTEIN S3AE >gi|6015730|emb|CAB57557.1| (Y18930) 30S
ribosomal protein S3AE [Sulfolobus solfataricus]
Length = 208
Score = 194 bits (488), Expect = 6e-49
Identities = 95/188 (50%), Positives = 131/188 (69%)
Query: 10 AAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDITGDFLKGHVKLY 69
A KDKWK+K+WY + P FG V +G TPA D + + R VE TL D+TGDF + +V LY
Sbjct: 7 AIKDKWKMKKWYSVITPKAFGEVSLGSTPAYDITQTIGRRVETTLYDLTGDFSQVYVHLY 66
Query: 70 FQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMVIAAR 129
F++ +G T+F G +L+R Y+RSL+RR++++I+ IF++TTKDGY +RV +V+
Sbjct: 67 FKIIGNEGDRLITRFVGHELSRDYLRSLIRRKSSKINSIFDVTTKDGYVVRVKGLVLTTY 126
Query: 130 RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPLKKAEIRK 189
+ SQ+ AIRKI+ E + KKA EL+F DF E V G++A EI + AKKIYPL+KAEI K
Sbjct: 127 KCHQSQKTAIRKIINETVSKKASELSFDDFTQEVVFGRLANEIFEAAKKIYPLRKAEIEK 186
Query: 190 IKVLGEPE 197
KVL PE
Sbjct: 187 TKVLKVPE 194
>sp|O27630|RS3A_METTH 30S RIBOSOMAL PROTEIN S3AE >gi|7441121|pir||F69079 ribosomal
protein S3a - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622716|gb|AAB86066.1| (AE000918)
ribosomal protein S3a [Methanobacterium
thermoautotrophicum]
Length = 195
Score = 180 bits (452), Expect = 1e-44
Identities = 90/193 (46%), Positives = 130/193 (66%)
Query: 4 AKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDITGDFLK 63
AK R +D WK K+WYVI +P FG E+G TP+ DP+ +L R VE T++++TGDF K
Sbjct: 2 AKARRRRVRDTWKEKKWYVIKSPKLFGENEIGTTPSRDPDFLLKRRVEATMRELTGDFSK 61
Query: 64 GHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMA 123
+VKL FQ+ V G A T+F G ++ Y+RS++RR T+R+D + TKDGYKL+V
Sbjct: 62 QYVKLKFQIDSVAGSEATTRFIGHQVTTDYVRSMIRRGTSRVDAPVIVETKDGYKLKVHP 121
Query: 124 MVIAARRIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPLK 183
+ I RR ++SQ++ +R+ ++E + + A E F++ V V GKIA+EI +AKKIYPLK
Sbjct: 122 LAITIRRAKSSQQKYMRQSIEEHLREIASEKTFEELVEGIVTGKIASEIYHQAKKIYPLK 181
Query: 184 KAEIRKIKVLGEP 196
+ EI K +VL EP
Sbjct: 182 RVEIIKSRVLEEP 194
>sp|P54059|RS3A_METJA 30S RIBOSOMAL PROTEIN S3AE >gi|2826354|gb|AAB98983.1| (U67541) SSU
ribosomal protein S3AE [Methanococcus jannaschii]
Length = 222
Score = 169 bits (423), Expect = 3e-41
Identities = 84/190 (44%), Positives = 122/190 (64%)
Query: 4 AKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDITGDFLK 63
++R+V +DKWK K WY IYA FGGV +G TPA+DP VL RV E +L+D+TGD K
Sbjct: 9 SRRKVRKVRDKWKEKVWYEIYATPEFGGVFIGYTPANDPSLVLGRVAETSLRDLTGDPTK 68
Query: 64 GHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMA 123
++YF+++ V G A ++ G R +++S +RRR +RID I ++ T+DG+K+R A
Sbjct: 69 HMHRVYFKIFGVTGNKAIAQYYGHDTTREFMKSQIRRRRSRIDAILDVKTQDGHKIRTKA 128
Query: 124 MVIAARRIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPLK 183
MV+ A R T Q+ IRK M+EII A+E F +V + G++A +I E KKI+P+K
Sbjct: 129 MVLTAYRANTKQKSDIRKKMEEIIKAMAKEKTFPQYVQAMLFGEMAEKIKNECKKIFPIK 188
Query: 184 KAEIRKIKVL 193
I K +VL
Sbjct: 189 NVIIYKSEVL 198
>pir||D64422 ribosomal protein S3a - Methanococcus jannaschii
Length = 222
Score = 166 bits (416), Expect = 2e-40
Identities = 83/190 (43%), Positives = 121/190 (63%)
Query: 4 AKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDITGDFLK 63
++R+V +DKWK K WY IYA FGGV +G TPA+DP VL RV E +L+D+TGD K
Sbjct: 9 SRRKVRKVRDKWKEKVWYEIYATPEFGGVFIGYTPANDPSLVLGRVAETSLRDLTGDPTK 68
Query: 64 GHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMA 123
++YF+++ V G A ++ G R +++S +RRR +RID I ++ T+DG+K+R A
Sbjct: 69 HMHRVYFKIFGVTGNKAIAQYYGHDTTREFMKSQIRRRRSRIDAILDVKTQDGHKIRTKA 128
Query: 124 MVIAARRIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPLK 183
MV+ A R T Q+ IRK M+EII A+E +V + G++A +I E KKI+P+K
Sbjct: 129 MVLTAYRXNTKQKSDIRKKMEEIIKAMAKEKTXPQYVQAMLFGEMAEKIKNECKKIFPIK 188
Query: 184 KAEIRKIKVL 193
I K +VL
Sbjct: 189 NVIIYKSEVL 198
>emb|CAC12292.1| (AL445066) 30S ribosomal protein S3a related protein [Thermoplasma
acidophilum]
Length = 215
Score = 137 bits (341), Expect = 1e-31
Identities = 68/192 (35%), Positives = 110/192 (56%)
Query: 2 MAAKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDITGDF 61
MA ++ K+KWK K WY + +P + G EV + +DPE ++NR+VEV + D+TG+F
Sbjct: 1 MAGEKAQKKGKEKWKEKTWYTVESPPYLGSKEVTVALGEDPESMVNRIVEVPISDLTGNF 60
Query: 62 LKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRV 121
K + K F++ +G T F G + YIR LVRRR RID I ++ T DG + V
Sbjct: 61 KKSNEKALFRITGCEGTKCKTIFIGHYIGDDYIRRLVRRRKERIDIIEDVKTSDGSIITV 120
Query: 122 MAMVIAARRIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYP 181
+V++ ++ +++ IRK + I K +L++ DFV + ++ + K IYP
Sbjct: 121 KIVVVSDGKLTNTKKSEIRKALTSFIVSKGSQLSYADFVRYLIGDDSYNDMVEATKNIYP 180
Query: 182 LKKAEIRKIKVL 193
L+K EIRK +++
Sbjct: 181 LRKIEIRKSELV 192
>gb|AAG19253.1| (AE005021) 30S ribosomal protein S3E; Rps3e [Halobacterium sp.
NRC-1]
Length = 206
Score = 121 bits (300), Expect = 7e-27
Identities = 59/180 (32%), Positives = 105/180 (57%), Gaps = 1/180 (0%)
Query: 18 KQWYVIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDITGDFLKGHVKLYFQVYDVKG 77
K+WY + AP+ F E+G T A++P++V +R ++ L D+ D ++KL FQ+ DV
Sbjct: 13 KRWYTVLAPEEFDRAELGETLAEEPDQVYDRTIQAALSDVR-DGGDNNIKLTFQIDDVGS 71
Query: 78 QNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMVIAARRIQTSQER 137
+A T+F +L R Y RSLVRR ++++ + T D Y++R+ + ++ SQ+
Sbjct: 72 DSASTQFVQAELTRDYQRSLVRRGSSKVAVTVTVLTTDDYRVRIQPVAYTTKQADQSQQH 131
Query: 138 AIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 197
AIR+ M +++ + EE F+ + + G++++ I EA IYPL++ E+ K + PE
Sbjct: 132 AIRRTMIDLVEEAGEERTFEALLNSIIEGRLSSAIYDEANTIYPLRRVEVEKATLEAHPE 191
>pir||T05287 ribosomal protein S3a, cytosolic - Arabidopsis thaliana
>gi|2661422|emb|CAA04689.1| (AJ001342) Putative
S-phase-specific ribosomal protein [Arabidopsis
thaliana] >gi|3096936|emb|CAA18846.1| (AL023094)
Putative S-phase-specific ribosomal protein [Arabidopsis
thaliana] >gi|7270417|emb|CAB80184.1| (AL161585)
Putative S-phase-specific ribosomal protein [Arabidopsis
thaliana]
Length = 262
Score = 108 bits (268), Expect = 4e-23
Identities = 69/203 (33%), Positives = 102/203 (49%), Gaps = 16/203 (7%)
Query: 11 AKDKWKLKQWYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLK 63
A D + K WY + AP F VG T E + +RV EV+L D+ D
Sbjct: 20 AVDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDN 79
Query: 64 GHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMA 123
+ K+ + DV+G+N T+F GM +RSLV++ T I+ ++ T DGY LR+
Sbjct: 80 AYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFC 139
Query: 124 MVIAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAK 174
+ RR Q+SQ R IR+ M EI+ K+A + K+ V + + I EI K
Sbjct: 140 IAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEK 199
Query: 175 EAKKIYPLKKAEIRKIKVLGEPE 197
+ IYPL+ IRK+K+L P+
Sbjct: 200 ATQGIYPLQNVFIRKVKILKAPK 222
>gb|AAD57005.1|AC009465_19 (AC009465) putative 40S ribosomal protein S3A (S phase specific);
75194-73527 [Arabidopsis thaliana]
Length = 262
Score = 106 bits (262), Expect = 2e-22
Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 16/203 (7%)
Query: 11 AKDKWKLKQWYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLK 63
A D + K WY + AP F VG T E + +RV EV+L D+ GD
Sbjct: 20 AVDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDN 79
Query: 64 GHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMA 123
+ K+ + DV+G+N +F GM +RSLV++ T I+ ++ T D Y LR+
Sbjct: 80 AYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFC 139
Query: 124 MVIAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAK 174
+ RR Q+SQ R IR+ M++I+ ++A + KD V + + I EI K
Sbjct: 140 IAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEK 199
Query: 175 EAKKIYPLKKAEIRKIKVLGEPE 197
+ IYPL+ IRK+K+L P+
Sbjct: 200 ATQGIYPLQNVFIRKVKILKAPK 222
>dbj|BAA89498.1| (AB029635) cyc07 [Daucus carota]
Length = 261
Score = 105 bits (259), Expect = 4e-22
Identities = 68/203 (33%), Positives = 100/203 (48%), Gaps = 16/203 (7%)
Query: 11 AKDKWKLKQWYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLK 63
A D + K WY I AP+ F VG T E + +RV EV L D+ GD +
Sbjct: 20 ATDPFAKKDWYDIKAPNVFQNKNVGKTLVSRTQGTKIASEGLKHRVFEVCLADLQGDEDQ 79
Query: 64 GHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMA 123
+ K+ + DV+G+N T F GM +RSLVR+ T I+ ++ T D Y LR+
Sbjct: 80 AYRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFC 139
Query: 124 MVIAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAK 174
+ +R Q+SQ R IR+ M EI+ +A + K+ V + + I EI K
Sbjct: 140 IGFTKKRANQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEK 199
Query: 175 EAKKIYPLKKAEIRKIKVLGEPE 197
I+PL+ IRK+K+L P+
Sbjct: 200 ATSSIFPLQNVFIRKVKILKAPK 222
>sp|P33444|RS3A_CATRO 40S RIBOSOMAL PROTEIN S3A (CYC07 PROTEIN)
Length = 260
Score = 104 bits (257), Expect = 8e-22
Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 16/203 (7%)
Query: 11 AKDKWKLKQWYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLK 63
A D + K WY I AP F VG T E + +RV E++L D+ GD
Sbjct: 20 AADPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEGLEHRVFEISLADLQGDEDH 79
Query: 64 GHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMA 123
K+ + D++G+N T F GM +RSLVR+ + I+ ++ T D Y LR+
Sbjct: 80 SFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDSYTLRMFC 139
Query: 124 MVIAARRI---------QTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAK 174
+ +R Q+SQ R IR+ M+EI+ +A+ + KD V + + I EI K
Sbjct: 140 IGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEK 199
Query: 175 EAKKIYPLKKAEIRKIKVLGEPE 197
IYPL+ IRK+K+L P+
Sbjct: 200 ATSSIYPLQNVFIRKVKILKAPK 222
>pir||JQ0939 ribosomal protein S3a - Madagascar periwinkle
>gi|217903|dbj|BAA00860.1| (D01058) ORF [Catharanthus
roseus]
Length = 245
Score = 104 bits (257), Expect = 8e-22
Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 16/203 (7%)
Query: 11 AKDKWKLKQWYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLK 63
A D + K WY I AP F VG T E + +RV E++L D+ GD
Sbjct: 20 AADPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEGLEHRVFEISLADLQGDEDH 79
Query: 64 GHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMA 123
K+ + D++G+N T F GM +RSLVR+ + I+ ++ T D Y LR+
Sbjct: 80 SFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDSYTLRMFC 139
Query: 124 MVIAARRI---------QTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAK 174
+ +R Q+SQ R IR+ M+EI+ +A+ + KD V + + I EI K
Sbjct: 140 IGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEK 199
Query: 175 EAKKIYPLKKAEIRKIKVLGEPE 197
IYPL+ IRK+K+L P+
Sbjct: 200 ATSSIYPLQNVFIRKVKILKAPK 222
>dbj|BAA05057.1| (D26058) This gene is specifically expressed at the S phase during
the cell cycle in the synchronous culture of periwinkle
cells. [Catharanthus roseus]
Length = 245
Score = 103 bits (254), Expect = 2e-21
Identities = 67/203 (33%), Positives = 99/203 (48%), Gaps = 16/203 (7%)
Query: 11 AKDKWKLKQWYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLK 63
A D + K WY I AP F VG T E + +RV E++L D+ GD
Sbjct: 20 AADPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEGLKHRVFEISLADLQGDEDH 79
Query: 64 GHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMA 123
K+ + D++G+N T F GM +RSLVR+ + I+ ++ T D Y LR+
Sbjct: 80 SFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDSYTLRMFC 139
Query: 124 MVIAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAK 174
+ +R Q+SQ R IR+ M+EI+ +A + KD V + + I EI K
Sbjct: 140 IGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAPSCDLKDLVQKFIPESIGREIEK 199
Query: 175 EAKKIYPLKKAEIRKIKVLGEPE 197
IYPL+ IRK+K+L P+
Sbjct: 200 ATPSIYPLQNVFIRKVKILKAPK 222
>sp|P49397|RS3A_ORYSA 40S RIBOSOMAL PROTEIN S3A (CYC07 PROTEIN) >gi|7441115|pir||S42540
ribosomal protein S3a - rice >gi|483431|dbj|BAA05059.1|
(D26060) cyc07 [Oryza sativa]
Length = 262
Score = 101 bits (249), Expect = 7e-21
Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 16/201 (7%)
Query: 13 DKWKLKQWYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLKGH 65
D + K WY I AP F +G T E + +RV EV+L D+ D + +
Sbjct: 22 DPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAY 81
Query: 66 VKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMV 125
K+ + DV+G+N T F GM +RSLV++ T I+ ++ T DGY LR+ +
Sbjct: 82 RKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIG 141
Query: 126 IAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEA 176
RR Q SQ R IR+ M EI+ +A + K+ V + + I EI K
Sbjct: 142 FTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKAT 201
Query: 177 KKIYPLKKAEIRKIKVLGEPE 197
I+PL+ +RK+K+L P+
Sbjct: 202 SSIFPLQNVFVRKVKILKAPK 222
>emb|CAB39062.1| (AL034559) 40S Ribosomal protein S3A [Plasmodium falciparum]
Length = 262
Score = 101 bits (248), Expect = 9e-21
Identities = 63/202 (31%), Positives = 100/202 (49%), Gaps = 16/202 (7%)
Query: 13 DKWKLKQWYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLKGH 65
D + K+WY + AP F G T + + R+ EV L D+ D + H
Sbjct: 22 DVFTKKEWYDLKAPKMFLVRNFGKTLVTKTIGKKLATDSLKGRIYEVNLADLNNDEDQAH 81
Query: 66 VKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMV 125
K+ + ++ YT F G+ + R + SL+R+ T I+G ++ T D Y LR+ +
Sbjct: 82 KKIKLSCDHIINRDCYTDFCGLSITRDKLCSLIRKGYTLIEGHTDVKTLDNYHLRMFCIA 141
Query: 126 IAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEA 176
+R QTSQ + IRK M +I+ +A ++ KD V + + I EI K+
Sbjct: 142 FTKKRQNQTKSTCYAQTSQIKKIRKKMVDIMTAEASKVLLKDLVKKFIPESIGKEIEKQC 201
Query: 177 KKIYPLKKAEIRKIKVLGEPEV 198
KKIYPL+ IRK+K+L P++
Sbjct: 202 KKIYPLQNVLIRKVKILKRPKL 223
>sp|P49396|RS3A_BRARA 40S RIBOSOMAL PROTEIN S3A (S PHASE SPECIFIC PROTEIN BIS289)
>gi|480282|pir||S36622 ribosomal protein S3a - turnip
>gi|387909|gb|AAA33013.1| (L23553) S-phase-specific
protein [Brassica rapa] >gi|397401|emb|CAA81030.1|
(Z25769) putative product [Brassica rapa]
Length = 262
Score = 99.5 bits (244), Expect = 3e-20
Identities = 67/202 (33%), Positives = 101/202 (49%), Gaps = 17/202 (8%)
Query: 13 DKWKLKQWYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLKGH 65
D + K WY I AP F VG T E + +RV EV+L D+ D + +
Sbjct: 22 DPFAKKDWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLNKDEDQAY 81
Query: 66 VKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMV 125
K+ + DV+G+N T+F GM +RSLV++ T I+ ++ T D Y LR+ +
Sbjct: 82 RKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLFCIA 141
Query: 126 IAARR---------IQTSQERAIRKIMQEIIYK-KAEELNFKDFVLEAVNGKIAAEIAKE 175
RR Q+SQ R IR M+EI+ K +A + K+ V + + I +I K
Sbjct: 142 FTKRRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKA 201
Query: 176 AKKIYPLKKAEIRKIKVLGEPE 197
+ IYPL+ IRK+K+L P+
Sbjct: 202 TQGIYPLQNVFIRKVKILKAPK 223
>pir||T38219 40s ribosomal protein S1B - fission yeast (Schizosaccharomyces
pombe) >gi|4049529|emb|CAA22556.1| (AL034565) 40s
ribosomal protein S3a.2/S1B [Schizosaccharomyces pombe]
>gi|4927952|gb|AAD33346.1|AF127914_1 (AF127914)
ribosomal protein S1B [Schizosaccharomyces pombe]
Length = 252
Score = 99.1 bits (243), Expect = 3e-20
Identities = 63/201 (31%), Positives = 100/201 (49%), Gaps = 16/201 (7%)
Query: 13 DKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLN-------RVVEVTLKDITGDFLKGH 65
D + K+WY I AP FF VG T + + N R++EV+L D+ D
Sbjct: 22 DPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEEHAF 81
Query: 66 VKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMV 125
K+ +V D++G++ T F G+ + +RSLVR+ T I+ I T DGY RV +
Sbjct: 82 RKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIG 141
Query: 126 IAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEA 176
RR Q+SQ RAIR+ M ++I + + ++ V + + I EI +
Sbjct: 142 FTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERAT 201
Query: 177 KKIYPLKKAEIRKIKVLGEPE 197
I+PL+ +RK+K+L P+
Sbjct: 202 GSIFPLQNVLVRKVKILKAPK 222
>sp|Q09781|RS3A_SCHPO 40S RIBOSOMAL PROTEIN S3AE-A (S1-A) >gi|2130267|pir||S62431 40s
ribosomal protein s3ae (S1) - fission yeast
(Schizosaccharomyces pombe) >gi|1008987|emb|CAA91095.1|
(Z54308) 40s ribosomal protein s3ae (S1)
[Schizosaccharomyces pombe]
Length = 252
Score = 98.7 bits (242), Expect = 4e-20
Identities = 63/201 (31%), Positives = 99/201 (48%), Gaps = 16/201 (7%)
Query: 13 DKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLN-------RVVEVTLKDITGDFLKGH 65
D + K WY I AP FF VG T + + N R++EV+L D+ D
Sbjct: 22 DPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEEHSF 81
Query: 66 VKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMV 125
K+ +V D++G++ T F G + +RSLVR+ + I+ I T DGY R+ +
Sbjct: 82 RKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIG 141
Query: 126 IAARRI---------QTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEA 176
+RR+ Q+SQ RAI + M ++I +A + K+ V + + I I K
Sbjct: 142 FTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKAT 201
Query: 177 KKIYPLKKAEIRKIKVLGEPE 197
IYPL+ +RK+K+L P+
Sbjct: 202 NNIYPLQNVFVRKVKILKAPK 222
>sp|P49198|RS3A_HELAN 40S RIBOSOMAL PROTEIN S3A >gi|7441118|pir||T09301 ribosomal protein
S3a - common sunflower >gi|469248|gb|AAA80978.1|
(L31645) ribosomal protein S3a [Helianthus annuus]
Length = 260
Score = 98.3 bits (241), Expect = 6e-20
Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 16/203 (7%)
Query: 11 AKDKWKLKQWYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLK 63
A D + K WY I AP F VG T E + +RV EV+L D+ D
Sbjct: 20 AADPFSKKDWYDIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDH 79
Query: 64 GHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMA 123
+ K+ + DV+G+N T F GM + +RSLV++ + I+ ++ T D + LR+
Sbjct: 80 SYRKIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFC 139
Query: 124 MVIAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAK 174
+ +R Q+SQ + IR+ M+EI+ +A+ + K+ V + + I EI K
Sbjct: 140 IGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEK 199
Query: 175 EAKKIYPLKKAEIRKIKVLGEPE 197
IYPL+ IRK+K+L P+
Sbjct: 200 ATSSIYPLQNVFIRKVKILKAPK 222
>gi|6323577 Ribosomal protein S1B (rp10B); Rps1bp [Saccharomyces cerevisiae]
>gi|127059|sp|P23248|RS3B_YEAST 40S RIBOSOMAL PROTEIN
S1-B (RP10B) >gi|83327|pir||S14051 ribosomal protein
S0.e.B, cytosolic - yeast (Saccharomyces cerevisiae)
>gi|3953|emb|CAA39044.1| (X55360) mitochondrial fusion
targeting mutant MFT1 protein [Saccharomyces cerevisiae]
>gi|558412|emb|CAA86258.1| (Z38114) len: 255, CAI: 0.76,
RS3B_YEAST P23248 40S RIBOSOMAL PROTEIN RP10B
[Saccharomyces cerevisiae]
Length = 255
Score = 96.3 bits (236), Expect = 2e-19
Identities = 61/201 (30%), Positives = 97/201 (47%), Gaps = 16/201 (7%)
Query: 13 DKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLN-------RVVEVTLKDITGDFLKGH 65
D + K+W+ I AP F VG T + + N RVVEV L D+ G
Sbjct: 22 DPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKNASDALKGRVVEVCLADLQGSEDHSF 81
Query: 66 VKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMV 125
K+ +V +V+G+N T F GM +RS+VR+ T I+ + T D Y LR+ A+
Sbjct: 82 RKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIA 141
Query: 126 IAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEA 176
++ Q+S RAIRK++ EI+ ++ + + + I EI
Sbjct: 142 FTRKQANQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENAT 201
Query: 177 KKIYPLKKAEIRKIKVLGEPE 197
K I+PL+ +RK+K+L +P+
Sbjct: 202 KDIFPLQNIHVRKVKLLKQPK 222
>gi|6323474 Ribosomal protein S1A (rp10A); Rps1ap [Saccharomyces cerevisiae]
>gi|464718|sp|P33442|RS3A_YEAST 40S RIBOSOMAL PROTEIN
S1-A (RP10A) >gi|101494|pir||S21121 ribosomal protein
S0.e.A, cytosolic - yeast (Saccharomyces cerevisiae)
>gi|396208|emb|CAA46676.1| (X65802) PLC1 [Saccharomyces
cerevisiae] >gi|471337|emb|CAA48559.1| (X68556) KRP-Y1
[Saccharomyces cerevisiae] >gi|665976|gb|AAB67521.1|
(U21094) Rp10ap: 40S ribosomal protein 10A
[Saccharomyces cerevisiae]
Length = 255
Score = 96.3 bits (236), Expect = 2e-19
Identities = 61/201 (30%), Positives = 97/201 (47%), Gaps = 16/201 (7%)
Query: 13 DKWKLKQWYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLKGH 65
D + K+W+ I AP F VG T + + + RVVEV L D+ G
Sbjct: 22 DPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSF 81
Query: 66 VKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMV 125
K+ +V +V+G+N T F GM +RS+VR+ T I+ + T D Y LR+ A+
Sbjct: 82 RKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIA 141
Query: 126 IAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEA 176
++ Q+S RAIRK++ EI+ K+ + + + I EI
Sbjct: 142 FTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENAT 201
Query: 177 KKIYPLKKAEIRKIKVLGEPE 197
K I+PL+ +RK+K+L +P+
Sbjct: 202 KDIFPLQNIHVRKVKLLKQPK 222
>sp|P49395|RS3A_APLCA 40S RIBOSOMAL PROTEIN S3A (LYSINE-RICH PROTEIN KRP-A)
>gi|2133516|pir||S43541 ribosomal protein S3a, cytosolic
- California sea hare >gi|471279|emb|CAA48558.1|
(X68555) KRP-A [Aplysia californica]
Length = 265
Score = 95.6 bits (234), Expect = 4e-19
Identities = 66/210 (31%), Positives = 104/210 (49%), Gaps = 20/210 (9%)
Query: 4 AKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPE-------KVLNRVVEVTLKD 56
AK++V D + K+WY + AP F ++G T + + RV EV+L D
Sbjct: 17 AKKKVV---DPFTKKEWYDVKAPSMFAVRQIGKTLVTRSQGTKIASDNLKGRVFEVSLAD 73
Query: 57 ITGDFLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDG 116
+ D + K +V+G+N T F GM L R + S+V++ T I+ ++ T DG
Sbjct: 74 LQNDEVTFR-KFKLIAEEVQGRNVLTNFSGMSLTRDKLCSMVKKWQTLIEANVDVKTTDG 132
Query: 117 YKLRVMAMVIAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGK 167
Y LRV A+ +R Q +Q +AIRK M EI+ ++ + K+ V + +
Sbjct: 133 YLLRVFAIGFTKKRNNQVKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDS 192
Query: 168 IAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 197
I +I K + IYPL I K+KVL +P+
Sbjct: 193 IGKDIEKSCQGIYPLHDVLIHKVKVLKKPK 222
>pir||T02874 ribosomal protein S3a, cytosolic - rice >gi|4079800|gb|AAC98779.1|
(AF052503) S-phase-specific ribosomal protein [Oryza
sativa]
Length = 261
Score = 92.4 bits (226), Expect = 3e-18
Identities = 61/201 (30%), Positives = 95/201 (46%), Gaps = 16/201 (7%)
Query: 13 DKWKLKQWYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLKGH 65
D + K WY I AP F +G T E + +RV EV+L D+ D + +
Sbjct: 22 DPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLRNDEDQAY 81
Query: 66 VKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMV 125
K+ + DV+G+N T F GM +RSLV++ T I+ ++ T D Y LR+ +
Sbjct: 82 RKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIG 141
Query: 126 IAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEA 176
RR Q ++ R+ M EI+ +A + K+ V + + I EI K
Sbjct: 142 FTKRRPNQVKRTCYAQVARSGRSRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKST 201
Query: 177 KKIYPLKKAEIRKIKVLGEPE 197
I+PL+ IRK+K+L P+
Sbjct: 202 SSIFPLQNVFIRKVKILKAPK 222
>pir||JC5250 ribosomal protein S3a, cytosolic [validated] - rat
Length = 264
Score = 90.9 bits (222), Expect = 1e-17
Identities = 64/210 (30%), Positives = 101/210 (47%), Gaps = 20/210 (9%)
Query: 4 AKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEK-------VLNRVVEVTLKD 56
AK++V D + K WY + AP F +G T + + RV EV+L D
Sbjct: 17 AKKKVV---DPFSKKDWYEVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLAD 73
Query: 57 ITGDFLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDG 116
+ D + K DV+G+N T F GM L R + S+V++ T I+ ++ T DG
Sbjct: 74 LQNDEVAFR-KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDG 132
Query: 117 YKLRVMAMVIAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGK 167
Y LR+ + +R Q Q R IRK M EI+ ++ + + K+ V + +
Sbjct: 133 YLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDS 192
Query: 168 IAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 197
I +I K + IYPL +RK+K+L +P+
Sbjct: 193 IGKDIEKACQSIYPLHDVFVRKVKMLKKPK 222
>sp|P48154|RS3A_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S3A >gi|630617|pir||S43584 ribosomal
protein S3a.F26F3.5, cytosolic - Caenorhabditis elegans
>gi|3877714|emb|CAA83605.1| (Z32681) contains similarity
to Pfam domain: PF01015 (Ribosomal S3Ae family),
Score=489.1, E-value=1.1e-143, N=1~cDNA EST yk51d11.5
comes from this gene; cDNA EST yk51d11.3 comes from this
gene~cDNA EST yk58d3.5 comes from this gene; cDNA EST
yk58d3.3 >
Length = 257
Score = 90.5 bits (221), Expect = 1e-17
Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 23/216 (10%)
Query: 2 MAAKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTL 54
M K A D + K+WY I AP+ F +VG T + E + RV EV+L
Sbjct: 10 MGKKGGKKKAVDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSL 69
Query: 55 KDITG---DFLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNI 111
D+ DF K KL + DV+G+N T F M + + S+V++ T I+ +
Sbjct: 70 GDLNNSEADFRK--FKLIAE--DVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAV 125
Query: 112 TTKDGYKLRVMAMVIAARRI---------QTSQERAIRKIMQEIIYKKAEELNFKDFVLE 162
T DGY LRV + + + +TS+ R IR M I K+ + K+ V +
Sbjct: 126 KTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSK 185
Query: 163 AVNGKIAAEIAKEAKKIYPLKKAEIRKIKVLGEPEV 198
+ I +I K K+YPL++ IRK+K++ P+V
Sbjct: 186 LIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKV 221
>pir||PC4158 ribosomal protein S3a - cat (fragment) >gi|950113|gb|AAB01669.1|
(U22231) ribosomal protein S3a [Felis catus]
Length = 260
Score = 90.5 bits (221), Expect = 1e-17
Identities = 64/210 (30%), Positives = 101/210 (47%), Gaps = 20/210 (9%)
Query: 4 AKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEK-------VLNRVVEVTLKD 56
AK++V D + K WY + AP F +G T + + RV EV+L D
Sbjct: 13 AKKKVV---DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLAD 69
Query: 57 ITGDFLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDG 116
+ D + K DV+G+N T F GM L R + S+V++ T I+ ++ T DG
Sbjct: 70 LQNDEVAFR-KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDG 128
Query: 117 YKLRVMAMVIAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGK 167
Y LR+ + +R Q Q R IRK M EI+ ++ + + K+ V + +
Sbjct: 129 YLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDS 188
Query: 168 IAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 197
I +I K + IYPL +RK+K+L +P+
Sbjct: 189 IGKDIEKACQSIYPLHDVFVRKVKMLKKPK 218
>gi|8394218 ribosomal protein S3a [Mus musculus]
>gi|3122836|sp|P97351|RS3A_MOUSE 40S RIBOSOMAL PROTEIN
S3A >gi|1841932|emb|CAB05955.1| (Z83368) ribosomal
protein S3a [Mus musculus]
Length = 264
Score = 90.5 bits (221), Expect = 1e-17
Identities = 64/210 (30%), Positives = 101/210 (47%), Gaps = 20/210 (9%)
Query: 4 AKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEK-------VLNRVVEVTLKD 56
AK++V D + K WY + AP F +G T + + RV EV+L D
Sbjct: 17 AKKKVV---DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLAD 73
Query: 57 ITGDFLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDG 116
+ D + K DV+G+N T F GM L R + S+V++ T I+ ++ T DG
Sbjct: 74 LQNDEVAFR-KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDG 132
Query: 117 YKLRVMAMVIAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGK 167
Y LR+ + +R Q Q R IRK M EI+ ++ + + K+ V + +
Sbjct: 133 YLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDS 192
Query: 168 IAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 197
I +I K + IYPL +RK+K+L +P+
Sbjct: 193 IGKDIEKACQSIYPLHDVFVRKVKMLKKPK 222
>gi|4506723 ribosomal protein S3A [Homo sapiens] >gi|11446189|ref|XP_003331.1|
ribosomal protein S3A [Homo sapiens]
>gi|1350985|sp|P49241|RS3A_HUMAN 40S RIBOSOMAL PROTEIN
S3A >gi|2136122|pir||JC4662 ribosomal protein S3a,
cytosolic - human >gi|182775|gb|AAA58487.1| (M84711)
v-fos transformation effector protein [Homo sapiens]
>gi|292447|gb|AAA60290.1| (M77234) ribosomal protein S3a
[Homo sapiens] >gi|854179|emb|CAA60827.1| (X87373)
ribosomal protein S3a [Homo sapiens]
Length = 264
Score = 90.5 bits (221), Expect = 1e-17
Identities = 64/210 (30%), Positives = 101/210 (47%), Gaps = 20/210 (9%)
Query: 4 AKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEK-------VLNRVVEVTLKD 56
AK++V D + K WY + AP F +G T + + RV EV+L D
Sbjct: 17 AKKKVV---DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLAD 73
Query: 57 ITGDFLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDG 116
+ D + K DV+G+N T F GM L R + S+V++ T I+ ++ T DG
Sbjct: 74 LQNDEVAFR-KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDG 132
Query: 117 YKLRVMAMVIAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGK 167
Y LR+ + +R Q Q R IRK M EI+ ++ + + K+ V + +
Sbjct: 133 YLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDS 192
Query: 168 IAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 197
I +I K + IYPL +RK+K+L +P+
Sbjct: 193 IGKDIEKACQSIYPLHDVFVRKVKMLKKPK 222
>gi|8394221 ribosomal protein S3a [Rattus norvegicus]
>gi|1350987|sp|P49242|RS3A_RAT 40S RIBOSOMAL PROTEIN S3A
(V-FOS TRANSFORMATION EFFECTOR PROTEIN)
>gi|285454|pir||A41974 ribosomal protein S3a - rat
>gi|207649|gb|AAA42335.1| (M84716) v-fos transformation
effector protein [Rattus norvegicus]
>gi|495140|emb|CAA53004.1| (X75161) rat ribosomal
protein S3a [Rattus norvegicus]
Length = 264
Score = 90.5 bits (221), Expect = 1e-17
Identities = 64/210 (30%), Positives = 101/210 (47%), Gaps = 20/210 (9%)
Query: 4 AKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEK-------VLNRVVEVTLKD 56
AK++V D + K WY + AP F +G T + + RV EV+L D
Sbjct: 17 AKKKVV---DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLAD 73
Query: 57 ITGDFLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDG 116
+ D + K DV+G+N T F GM L R + S+V++ T I+ ++ T DG
Sbjct: 74 LQNDEVAFR-KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDG 132
Query: 117 YKLRVMAMVIAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGK 167
Y LR+ + +R Q Q R IRK M EI+ ++ + + K+ V + +
Sbjct: 133 YLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDS 192
Query: 168 IAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 197
I +I K + IYPL +RK+K+L +P+
Sbjct: 193 IGKDIEKACQSIYPLHDVFVRKVKMLKKPK 222
>gb|AAA35682.1| (L13802) ribosmal protein small subunit [Homo sapiens]
Length = 264
Score = 90.5 bits (221), Expect = 1e-17
Identities = 64/210 (30%), Positives = 101/210 (47%), Gaps = 20/210 (9%)
Query: 4 AKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEK-------VLNRVVEVTLKD 56
AK++V D + K WY + AP F +G T + + RV EV+L D
Sbjct: 17 AKKKVV---DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLAD 73
Query: 57 ITGDFLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDG 116
+ D + K DV+G+N T F GM L R + S+V++ T I+ ++ T DG
Sbjct: 74 LQNDEVAFR-KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDG 132
Query: 117 YKLRVMAMVIAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGK 167
Y LR+ + +R Q Q R IRK M EI+ ++ + + K+ V + +
Sbjct: 133 YLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDS 192
Query: 168 IAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 197
I +I K + IYPL +RK+K+L +P+
Sbjct: 193 IGKDIEKACQSIYPLHDVFVRKVKMLKKPK 222
>sp|P40910|RS3A_CANAL 40S RIBOSOMAL PROTEIN S3AE (S1) >gi|1076943|pir||S49366 ribosomal
protein S0.e.B, cytosolic - yeast (Candida albicans)
>gi|557223|emb|CAA57542.1| (X82017) ribosomal protein 10
[Candida albicans]
Length = 256
Score = 90.5 bits (221), Expect = 1e-17
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 16/201 (7%)
Query: 13 DKWKLKQWYVIYAPDFFGGVEVGLTPADDPEKVLN-------RVVEVTLKDITGDFLKGH 65
D + K W+ I AP F VG T + + N RV EV L D+ G +
Sbjct: 22 DPFTRKDWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSY 81
Query: 66 VKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMV 125
K+ +V +V+G+N T F G+ +RSLVR+ + ++ + T D Y LRV A+
Sbjct: 82 RKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIA 141
Query: 126 IAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEA 176
R+ Q+S+ R RK M EII ++ + + I EI K
Sbjct: 142 FTKRQPNQIKETTYAQSSKLREARKKMIEIIEREVSNCTLAQLTSKLIPEVIGREIEKST 201
Query: 177 KKIYPLKKAEIRKIKVLGEPE 197
+ I+PL+ IRK+K+L +P+
Sbjct: 202 QTIFPLQNVHIRKVKLLKQPK 222
>sp|O73813|RS3A_ORYLA 40S RIBOSOMAL PROTEIN S3A (V-FOS TRANSFORMATION EFFECTOR PROTEIN)
>gi|3037139|gb|AAD10201.1| (AF056328) V-Fos
transformation effector [Oryzias latipes]
Length = 266
Score = 89.3 bits (218), Expect = 3e-17
Identities = 60/201 (29%), Positives = 96/201 (46%), Gaps = 17/201 (8%)
Query: 13 DKWKLKQWYVIYAPDFFGGVEVGLTPADDPEK-------VLNRVVEVTLKDITGDFLKGH 65
D + K WY + AP F +G T + + RV EV+L D+ D +
Sbjct: 23 DPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFR 82
Query: 66 VKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMV 125
K DV+G+N T F GM L R + S+V++ T I+ ++ T DGY LR+ +
Sbjct: 83 -KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVG 141
Query: 126 IAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEA 176
+R Q Q R IRK M EI+ ++ + + K+ V + + + +I K
Sbjct: 142 FTKKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKAC 201
Query: 177 KKIYPLKKAEIRKIKVLGEPE 197
+ IYPL +RK+K+L +P+
Sbjct: 202 QSIYPLHDVYVRKVKMLKKPK 222
>sp|O43999|RS3A_EIMTE 40S RIBOSOMAL PROTEIN S3A >gi|2792508|gb|AAD08643.1| (AF042107)
ribosomal protein S3a [Eimeria tenella]
Length = 264
Score = 88.5 bits (216), Expect = 5e-17
Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 20/210 (9%)
Query: 4 AKRRVSAAKDKWKLKQWYVIYAPDFFGGVEVGLTPADDPEK-------VLNRVVEVTLKD 56
AK++V D + K WY + AP F +G T + + RV EV+L D
Sbjct: 17 AKKKVV---DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLAD 73
Query: 57 ITGDFLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDG 116
+ D + K DV+G+N T F GM L R + S+V++ T I+ ++ T DG
Sbjct: 74 LQNDEVAFR-KFKLITEDVQGKNCLTNFHGMDLTRDKMFSMVKKWQTMIEAHVDVKTTDG 132
Query: 117 YKLRVMAMVIAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGK 167
Y LR+ + +R Q Q R IRK M EI+ + + + K+ V + +
Sbjct: 133 YLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDS 192
Query: 168 IAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 197
I +I K + IYPL +RK+K+L +P+
Sbjct: 193 IGKDIEKACQSIYPLHDVYVRKVKMLKKPK 222
>gb|AAC62117.1| (AF034971) ribosomal protein S3a [Drosophila melanogaster]
>gi|7304341|gb|AAF59372.1| (AE003845) RpS3A gene product
[Drosophila melanogaster]
Length = 268
Score = 87.8 bits (214), Expect = 8e-17
Identities = 64/202 (31%), Positives = 93/202 (45%), Gaps = 18/202 (8%)
Query: 13 DKWKLKQWYVIYAPDFFGGVEVGLTPADDPEK-------VLNRVVEVTLKDITGDF--LK 63
D + K WY + AP+ F ++G T + + + RV EV+L D+ D +
Sbjct: 23 DPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPER 82
Query: 64 GHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMA 123
K DV+ +N F GM L RS+V++ T I+ I T DGY LRV
Sbjct: 83 SFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFC 142
Query: 124 MVIAARRIQT---------SQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAK 174
+ A+ Q+ SQ R IR M +II + + K V + IA +I K
Sbjct: 143 IGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEK 202
Query: 175 EAKKIYPLKKAEIRKIKVLGEP 196
++IYPL IRK+KVL +P
Sbjct: 203 SCQRIYPLHDVYIRKVKVLKKP 224
>sp|P55830|RS3A_DROME 40S RIBOSOMAL PROTEIN S3A (C3 PROTEIN)
Length = 268
Score = 87.8 bits (214), Expect = 8e-17
Identities = 64/202 (31%), Positives = 93/202 (45%), Gaps = 18/202 (8%)
Query: 13 DKWKLKQWYVIYAPDFFGGVEVGLTPADDPEK-------VLNRVVEVTLKDITGDF--LK 63
D + K WY + AP+ F ++G T + + + RV EV+L D+ D +
Sbjct: 23 DPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPER 82
Query: 64 GHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMA 123
K DV+ +N F GM L RS+V++ T I+ I T DGY LRV
Sbjct: 83 SFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFC 142
Query: 124 MVIAARRIQT---------SQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAK 174
+ A+ Q+ SQ R IR M +II + + K V + IA +I K
Sbjct: 143 IGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEK 202
Query: 175 EAKKIYPLKKAEIRKIKVLGEP 196
++IYPL IRK+KVL +P
Sbjct: 203 SCQRIYPLHDVYIRKVKVLKKP 224
>gb|AAD23952.1|AF093109_1 (AF093109) ribosomal protein S3 [Tortula ruralis]
Length = 248
Score = 84.3 bits (205), Expect = 1e-15
Identities = 61/199 (30%), Positives = 96/199 (47%), Gaps = 14/199 (7%)
Query: 13 DKWKLKQWYVIYAPDFFGGVEVG-----LTPADDPEKVLN-RVVEVTLKDITGDFLKGHV 66
D + K WY I AP G LN RV EV+L D+ D +
Sbjct: 22 DPFSKKDWYDIKAPPRSRRARSGRRCHRTAGTKIASDGLNFRVFEVSLADLQNDEDQAFR 81
Query: 67 KLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMVI 126
K+ + DV+G+N T F GM +RSLVR+ + I ++ T D Y++R+ +
Sbjct: 82 KIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIQAHVDVKTTDNYQIRIFCIAF 141
Query: 127 AARR-------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAK-EAKK 178
+R S + AIR+ M+EI+ K+A+ + K+ V + + I EI + ++
Sbjct: 142 TKKRPNHTRNFYAQSSQIAIRRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEWRSQG 201
Query: 179 IYPLKKAEIRKIKVLGEPE 197
IYPL+ IRK+K+L P+
Sbjct: 202 IYPLQSTFIRKVKILKAPK 220
>emb|CAA71201.1| (Y10115) ribosomal protein S3a [Drosophila melanogaster]
Length = 270
Score = 81.9 bits (199), Expect = 5e-15
Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 20/204 (9%)
Query: 13 DKWKLKQWYVIYAPDFFGGVEVGLTPADDPEK-------VLNRVVEVTL-KDITGDFLKG 64
D + K WY + AP+ F ++G T + + RV EV+L D+ D
Sbjct: 23 DPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVPDLQKDIDPE 82
Query: 65 HVKLYFQVY--DVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVM 122
H F++ DV+ +N F GM L RS+V++ T I+ I T DGY LRV
Sbjct: 83 HSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVF 142
Query: 123 AMVIAARRIQT------SQERAIRKI----MQEIIYKKAEELNFKDFVLEAVNGKIAAEI 172
+ A+ Q+ + E +RKI M +II + + K V + IA +I
Sbjct: 143 CIGFTAKDQQSQRKTCYAHESQVRKIRSGRMTDIITNEVSGADLKQLVNKLALDSIAKDI 202
Query: 173 AKEAKKIYPLKKAEIRKIKVLGEP 196
K ++IYPL IRK+KVL +P
Sbjct: 203 EKSCQRIYPLHDVYIRKVKVLKKP 226
>sp|P52813|RS3A_ANOGA 40S RIBOSOMAL PROTEIN S3A (C3 PROTEIN) >gi|1359478|emb|CAA66861.1|
(X98186) put. S3a ribosomal protein homologue [Anopheles
gambiae]
Length = 269
Score = 78.0 bits (189), Expect = 7e-14
Identities = 59/202 (29%), Positives = 91/202 (44%), Gaps = 18/202 (8%)
Query: 13 DKWKLKQWYVIYAPDFFGGVEVGLTPADDPEK-------VLNRVVEVTLKDITG--DFLK 63
D + K WY + AP+ F + G T + + + RV EV+L D+ D +
Sbjct: 23 DPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDAER 82
Query: 64 GHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMA 123
K V G++ T F GM L +RS+V + T I+ ++ T DG+ LRV
Sbjct: 83 SFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVNKWQTLIECSVDVKTTDGFMLRVFC 142
Query: 124 MVIAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAK 174
+ + Q SQ + IR M II ++ + K V + + IA +I K
Sbjct: 143 IGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEK 202
Query: 175 EAKKIYPLKKAEIRKIKVLGEP 196
+ +YPL IRK+KVL +P
Sbjct: 203 ACQVVYPLHDVYIRKVKVLKKP 224
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.137 0.382
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63702608
Number of Sequences: 2977
Number of extensions: 2346887
Number of successful extensions: 6603
Number of sequences better than 1.0e-10: 42
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 6539
Number of HSP's gapped (non-prelim): 42
length of query: 200
length of database: 189,106,746
effective HSP length: 57
effective length of query: 143
effective length of database: 154,992,987
effective search space: 22163997141
effective search space used: 22163997141
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)