BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0036 (PAB0036) DE:Hypothetical protein
         (253 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75193 hypothetical protein PAB0036 - Pyrococcus abyssi (st...   500  e-141
pir||E71225 hypothetical protein PH0063 - Pyrococcus horikoshii ...   367  e-100
sp|Q58013|Y596_METJA HYPOTHETICAL PROTEIN MJ0596 >gi|2128399|pir...    76  5e-13

>pir||D75193 hypothetical protein PAB0036 - Pyrococcus abyssi (strain Orsay)
           >gi|5457504|emb|CAB48995.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 253
           
 Score =  500 bits (1273), Expect = e-141
 Identities = 253/253 (100%), Positives = 253/253 (100%)

Query: 1   MQDIAEFTLKIKDMIVGEALDEINDENMSRFLARVSNTVRQEIPKYLIEKIDVDGMIKGI 60
           MQDIAEFTLKIKDMIVGEALDEINDENMSRFLARVSNTVRQEIPKYLIEKIDVDGMIKGI
Sbjct: 1   MQDIAEFTLKIKDMIVGEALDEINDENMSRFLARVSNTVRQEIPKYLIEKIDVDGMIKGI 60

Query: 61  KIQGTLEEKLKALKSPGTSRKIGNYIKEDDKKLRKLLQDVAKVVLVWNTLRDDLPLDFPV 120
           KIQGTLEEKLKALKSPGTSRKIGNYIKEDDKKLRKLLQDVAKVVLVWNTLRDDLPLDFPV
Sbjct: 61  KIQGTLEEKLKALKSPGTSRKIGNYIKEDDKKLRKLLQDVAKVVLVWNTLRDDLPLDFPV 120

Query: 121 GRIESLSTQPRYEEEHINFTVKYGKWIVVKRLIIDEKTPMLDIARLLASINESAVGKIPE 180
           GRIESLSTQPRYEEEHINFTVKYGKWIVVKRLIIDEKTPMLDIARLLASINESAVGKIPE
Sbjct: 121 GRIESLSTQPRYEEEHINFTVKYGKWIVVKRLIIDEKTPMLDIARLLASINESAVGKIPE 180

Query: 181 FAGIDMKEIKDYFGGFKRVRKDEEIEELVRAFRNFKPENELAIRYAVGEMLSKLGLSIDV 240
           FAGIDMKEIKDYFGGFKRVRKDEEIEELVRAFRNFKPENELAIRYAVGEMLSKLGLSIDV
Sbjct: 181 FAGIDMKEIKDYFGGFKRVRKDEEIEELVRAFRNFKPENELAIRYAVGEMLSKLGLSIDV 240

Query: 241 PSKNLEKYLEKTG 253
           PSKNLEKYLEKTG
Sbjct: 241 PSKNLEKYLEKTG 253


>pir||E71225 hypothetical protein PH0063 - Pyrococcus horikoshii
           >gi|3256449|dbj|BAA29132.1| (AP000001) 254aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 254
           
 Score =  367 bits (931), Expect = e-100
 Identities = 178/251 (70%), Positives = 213/251 (83%)

Query: 3   DIAEFTLKIKDMIVGEALDEINDENMSRFLARVSNTVRQEIPKYLIEKIDVDGMIKGIKI 62
           DI EFTLK+  + VGEA  E+ ++ ++ FLARVSNTVR EIPKYL E+IDVD M+K + I
Sbjct: 4   DIVEFTLKLGGLEVGEAPKELREDQIAIFLARVSNTVRHEIPKYLQERIDVDRMLKELTI 63

Query: 63  QGTLEEKLKALKSPGTSRKIGNYIKEDDKKLRKLLQDVAKVVLVWNTLRDDLPLDFPVGR 122
            G LEEKLK LKSPGTSRKI +YI EDD+KL+KLL DVAKV+LVWNTL+DDLP+DFPVG+
Sbjct: 64  NGALEEKLKKLKSPGTSRKINSYILEDDRKLKKLLLDVAKVILVWNTLKDDLPIDFPVGK 123

Query: 123 IESLSTQPRYEEEHINFTVKYGKWIVVKRLIIDEKTPMLDIARLLASINESAVGKIPEFA 182
           I  L   PRY+E+HINFT KYG+WIVVKRLIIDEKTP LDIARLLASINE+AV KIPEFA
Sbjct: 124 ISELKITPRYKEDHINFTAKYGRWIVVKRLIIDEKTPKLDIARLLASINETAVNKIPEFA 183

Query: 183 GIDMKEIKDYFGGFKRVRKDEEIEELVRAFRNFKPENELAIRYAVGEMLSKLGLSIDVPS 242
           GID+  I+++F  FK+V+K+EEI+ L+  FR+FKP NEL +RYA+ EM+SKLGLSID+PS
Sbjct: 184 GIDIGRIREHFRDFKKVKKEEEIKRLMEKFRSFKPTNELEVRYAISEMISKLGLSIDIPS 243

Query: 243 KNLEKYLEKTG 253
           KNLEKYLEKTG
Sbjct: 244 KNLEKYLEKTG 254


>sp|Q58013|Y596_METJA HYPOTHETICAL PROTEIN MJ0596 >gi|2128399|pir||D64374 hypothetical
           protein MJ0596 - Methanococcus jannaschii
           >gi|1591305|gb|AAB98596.1| (U67508) M. jannaschii
           predicted coding region MJ0596 [Methanococcus
           jannaschii]
           Length = 141
           
 Score = 75.7 bits (183), Expect = 5e-13
 Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 16/135 (11%)

Query: 134 EEHINFTVKYGKWIVVKRLIIDEKTPMLDIARLLASINESAVGKIPEFAGIDMKEIKDYF 193
           E+ I F  K+ KW VVK+L IDE T  ++IARLLASI+E+ + KIPE+   DM ++ +  
Sbjct: 2   EDKIEFMAKHKKWFVVKKLKIDENTEDIEIARLLASIDETVLNKIPEYLPFDMNKLYEIA 61

Query: 194 GGFKRVRK----DEEIEELVRAFRN------------FKPENELAIRYAVGEMLSKLGLS 237
            G  + +K    +EEI E+++  ++             K   E+        +L +LG+ 
Sbjct: 62  DGIYQKKKGRITEEEIAEVLKKLKSPATTRKLNEITESKEGKEILKAILNNIILERLGIQ 121

Query: 238 IDVPSKNLEKYLEKT 252
             V  K +EKY+E +
Sbjct: 122 TRVSPKVIEKYIENS 136


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.139    0.382 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89541850
Number of Sequences: 2977
Number of extensions: 3764155
Number of successful extensions: 10765
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10760
Number of HSP's gapped (non-prelim): 4
length of query: 253
length of database: 189,106,746
effective HSP length: 58
effective length of query: 195
effective length of database: 154,394,500
effective search space: 30106927500
effective search space used: 30106927500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)