BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0037 (PAB0037) DE:Hypothetical protein
(249 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75193 hypothetical protein PAB0037 - Pyrococcus abyssi (st... 511 e-144
pir||G71225 hypothetical protein PH0065 - Pyrococcus horikoshii ... 436 e-121
pir||T44629 hypothetical protein [imported] - Bacillus firmus (f... 83 2e-15
dbj|BAB05344.1| (AP001512) unknown conserved protein [Bacillus h... 80 3e-14
sp|P50738|YPDC_BACSU HYPOTHETICAL 24.7 KD PROTEIN IN RECQ-CMK IN... 78 8e-14
pir||G75519 conserved hypothetical protein - Deinococcus radiodu... 78 1e-13
emb|CAC08406.1| (AL392177) putative integral membrane protein [S... 75 1e-12
gb|AAG20660.1| (AE005135) Vng2625c [Halobacterium sp. NRC-1] 71 2e-11
>pir||E75193 hypothetical protein PAB0037 - Pyrococcus abyssi (strain Orsay)
>gi|5457505|emb|CAB48996.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 249
Score = 511 bits (1303), Expect = e-144
Identities = 249/249 (100%), Positives = 249/249 (100%)
Query: 1 MMNLRFADRGDNVSPFLYLIYFAYAPALALLWYFYHQDRLEPEPKRIVLGTFLLGGTLSV 60
MMNLRFADRGDNVSPFLYLIYFAYAPALALLWYFYHQDRLEPEPKRIVLGTFLLGGTLSV
Sbjct: 1 MMNLRFADRGDNVSPFLYLIYFAYAPALALLWYFYHQDRLEPEPKRIVLGTFLLGGTLSV 60
Query: 61 GVALILESVLVPRWFPRIPALLPATFLYVALVAGIVEEPAKALAIRYAYNSGQLYGIMDG 120
GVALILESVLVPRWFPRIPALLPATFLYVALVAGIVEEPAKALAIRYAYNSGQLYGIMDG
Sbjct: 61 GVALILESVLVPRWFPRIPALLPATFLYVALVAGIVEEPAKALAIRYAYNSGQLYGIMDG 120
Query: 121 VIYGVAAGLGFAATENLLYGLGYGLQVTIQRALLTPIGHATWSAIVGVGYGLKAEGKVFT 180
VIYGVAAGLGFAATENLLYGLGYGLQVTIQRALLTPIGHATWSAIVGVGYGLKAEGKVFT
Sbjct: 121 VIYGVAAGLGFAATENLLYGLGYGLQVTIQRALLTPIGHATWSAIVGVGYGLKAEGKVFT 180
Query: 181 TIPYFTLAILLHFLWDYYAFMSTVSPVYYLMILLIFTINIVIIRWLVILGKREDMERFWW 240
TIPYFTLAILLHFLWDYYAFMSTVSPVYYLMILLIFTINIVIIRWLVILGKREDMERFWW
Sbjct: 181 TIPYFTLAILLHFLWDYYAFMSTVSPVYYLMILLIFTINIVIIRWLVILGKREDMERFWW 240
Query: 241 YILMGGRRW 249
YILMGGRRW
Sbjct: 241 YILMGGRRW 249
>pir||G71225 hypothetical protein PH0065 - Pyrococcus horikoshii
>gi|3256451|dbj|BAA29134.1| (AP000001) 237aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 237
Score = 436 bits (1108), Expect = e-121
Identities = 198/231 (85%), Positives = 224/231 (96%)
Query: 19 LIYFAYAPALALLWYFYHQDRLEPEPKRIVLGTFLLGGTLSVGVALILESVLVPRWFPRI 78
++YFAYAPALALLWYFYHQDRLEPEPKR+V+GTF+LGGTLSV VALI+ES+LVPRWFPRI
Sbjct: 7 ILYFAYAPALALLWYFYHQDRLEPEPKRVVIGTFILGGTLSVSVALIVESLLVPRWFPRI 66
Query: 79 PALLPATFLYVALVAGIVEEPAKALAIRYAYNSGQLYGIMDGVIYGVAAGLGFAATENLL 138
PALLPATFLY++L+AGIVEEPAKALAI+YAYNSG LYGIMDGV+YGVAAGLGFAATENLL
Sbjct: 67 PALLPATFLYISLIAGIVEEPAKALAIKYAYNSGHLYGIMDGVVYGVAAGLGFAATENLL 126
Query: 139 YGLGYGLQVTIQRALLTPIGHATWSAIVGVGYGLKAEGKVFTTIPYFTLAILLHFLWDYY 198
YGLGYG+ VTIQRALLTPIGHATWSAIVGVGYGLKAEGKV+T PYFTLA+LLHFLWDYY
Sbjct: 127 YGLGYGVHVTIQRALLTPIGHATWSAIVGVGYGLKAEGKVYTLAPYFTLAVLLHFLWDYY 186
Query: 199 AFMSTVSPVYYLMILLIFTINIVIIRWLVILGKREDMERFWWYILMGGRRW 249
AFMS++SPVYY ++LLIFTIN++IIRWL+ILG++EDMERFWWY ++GGRRW
Sbjct: 187 AFMSSISPVYYGIVLLIFTINVLIIRWLIILGRKEDMERFWWYRILGGRRW 237
>pir||T44629 hypothetical protein [imported] - Bacillus firmus (fragment)
>gi|1813493|gb|AAB41687.1| (U64314) hydrophobic protein
[Bacillus firmus]
Length = 201
Score = 83.5 bits (203), Expect = 2e-15
Identities = 61/206 (29%), Positives = 104/206 (49%), Gaps = 14/206 (6%)
Query: 28 LALLWYFYHQDRLEPEPKRIVLGTFLLGGTLSVGVALILESVLVPRWFPRIPALLPATFL 87
+ALL YFY ++ E +V TF++G +++ V+V ++ LL A
Sbjct: 1 MALLSYFYLRNEYESTVNALVFRTFIIG-------LILVFPVMVLQYAFTAEGLLQAGLS 53
Query: 88 YVALVAGIVEEPAKALAIRY-AYNSGQLYGIMDGVIYGVAAGLGFAATENLLYGLGYGLQ 146
++ G EE K + + AY GQ+ DG++YGV+ LGFA+ EN+ Y L +GL+
Sbjct: 54 QAFILYGFFEEFFKWFMLYFFAYQYGQMKRRYDGIVYGVSLSLGFASMENVFYILAHGLE 113
Query: 147 VTIQRALLTPIGHATWSAIVGVGYGLKAEGKVFTTIPYFTLAILLH-FLWDYYAFMSTVS 205
+ RALL HA + I+G G +A+ + + L++L+ L Y F+
Sbjct: 114 TAVGRALLPVSSHALYGVIMGYYLG-RAKMENTKRKQFLLLSLLIPVMLHGVYDFILLTF 172
Query: 206 PVYYLMILLIFTINIVIIRWLVILGK 231
+Y+L+ L+ F + + W++ L K
Sbjct: 173 DMYFLIGLVPFMVGL----WILALNK 194
>dbj|BAB05344.1| (AP001512) unknown conserved protein [Bacillus halodurans]
Length = 215
Score = 80.0 bits (194), Expect = 3e-14
Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 19/215 (8%)
Query: 19 LIYFAYAPALALLWYFYHQDRLEPEPKRIVLGTFLLGGTLSVGVALILESVLVPRWFPRI 78
L+ A APA+ALL +FY ++ + V+ TFL+G L V ++ + L +F
Sbjct: 4 LLTAAIAPAMALLCFFYLKNEYGSQTLGFVVRTFLIGALLMFPVMVLQHAFLAEGFFAN- 62
Query: 79 PALLPATFLYVALVAGIVEEPAKALAIRY-AYNSGQLYGIMDGVIYGVAAGLGFAATENL 137
LL A LY G EE K + + AY + DG+I+GV+ LGFA+ EN
Sbjct: 63 -PLLKAFILY-----GFFEEFFKWFMLYFFAYKHVEFNRRYDGIIFGVSLSLGFASMENG 116
Query: 138 LYGLGYGLQVTIQRALLTPIGHATWSAIVGVGYGL----KAEGKVFTTIPYFTLAILLHF 193
LY + G++ + RALL HA + I+G G + K + + F L +LLH
Sbjct: 117 LYLIANGVETALGRALLPVSSHAIYGVIMGYYLGRAKMEEKHRKKWLVLSLF-LPVLLHS 175
Query: 194 LWDYYAFMSTVSPVYYLMILLIFTINIVIIRWLVI 228
L+D + + ++L +++ F ++++ W+ I
Sbjct: 176 LYDAILLLWS---KHFLFVMVPF---MLVLWWVAI 204
>sp|P50738|YPDC_BACSU HYPOTHETICAL 24.7 KD PROTEIN IN RECQ-CMK INTERGENIC REGION
>gi|7474672|pir||B69934 conserved hypothetical protein
ypdC - Bacillus subtilis >gi|1146209|gb|AAC83956.1|
(L47648) putative [Bacillus subtilis]
>gi|2634712|emb|CAB14210.1| (Z99115) similar to
hypothetical proteins [Bacillus subtilis]
>gi|2634729|emb|CAB14226.1| (Z99116) similar to
hypothetical proteins [Bacillus subtilis]
Length = 218
Score = 78.4 bits (190), Expect = 8e-14
Identities = 58/203 (28%), Positives = 96/203 (46%), Gaps = 13/203 (6%)
Query: 19 LIYFAYAPALALLWYFYHQDRLEPEPKRIVLGTFLLGGTLSVGVALILESVLVPRWFPRI 78
+I AP +ALL YFY +D+ + EP +VL +F LG L + I ++
Sbjct: 4 IISAGIAPGIALLSYFYLKDQYDNEPVHMVLRSFFLGVVLVFPIMFI-------QYVLEK 56
Query: 79 PALLPATFLYVALVAGIVEEPAKALAIRYA-YNSGQLYGIMDGVIYGVAAGLGFAATENL 137
+ +F L +G +EE K + + Y DG++YG + LGFA EN+
Sbjct: 57 ENVGGGSFFVSFLSSGFLEESLKWFILMISVYPHAHFDEHYDGIVYGASVSLGFATLENI 116
Query: 138 LYGLGYGLQVTIQRALLTPIGHATWSAIVGVGYGLKAEGKVFTTIPYFTLAI----LLHF 193
LY +G+G++ RALL HA I+G G + + TL++ LLH
Sbjct: 117 LYLIGHGVEHAFVRALLPVSCHALIGVIMGFYLGKARFSADKARVKWLTLSLVVPSLLHG 176
Query: 194 LWDYYAFMSTVSPVYYLMILLIF 216
+D + + + +YY++ ++F
Sbjct: 177 SYD-FILTALSNWIYYMLPFMVF 198
>pir||G75519 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6458123|gb|AAF10019.1|AE001903_7 (AE001903)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 166
Score = 77.6 bits (188), Expect = 1e-13
Identities = 52/137 (37%), Positives = 70/137 (50%), Gaps = 6/137 (4%)
Query: 28 LALLWYFYHQDRLEPEPKRIVLGTFLLGGTLSVGVALILESVLVPRWFPRIPALLPATFL 87
L LW+F +DR PEP ++ TF G + VA E+ L + + P T L
Sbjct: 13 LGWLWFFVRRDR-HPEPLWLLARTFAWG-MFAWFVAASFEASLGRM----LSSSAPLTLL 66
Query: 88 YVALVAGIVEEPAKALAIRYAYNSGQLYGIMDGVIYGVAAGLGFAATENLLYGLGYGLQV 147
VAL+ ++EE +K LA A + MDG++Y V A LGFA ENL Y L +G
Sbjct: 67 LVALLTAVIEEVSKFLATSTAADEPSFDEPMDGLVYAVTAALGFALVENLTYALTFGAGT 126
Query: 148 TIQRALLTPIGHATWSA 164
ALL +GHA +SA
Sbjct: 127 ATGHALLATLGHALFSA 143
>emb|CAC08406.1| (AL392177) putative integral membrane protein [Streptomyces
coelicolor]
Length = 463
Score = 74.5 bits (180), Expect = 1e-12
Identities = 63/245 (25%), Positives = 107/245 (42%), Gaps = 28/245 (11%)
Query: 16 FLYLIYFAYAPALALLWYFYHQDRLEPEPKRIVLGTFLLGGTLSVGVALILESVLVPRWF 75
FL + A P L+ F DR++P P R +L F G + +A++ S RW
Sbjct: 52 FLVGLGLAVLPVPLLMAAFRWLDRVDPGPWRNLLFCFAWGACAAALIAIVANS-FATRWI 110
Query: 76 PRIPA-LLPATFLYVALVAGIVEEPAKALAIR--YAYNSGQLYGIMDGVIYGVAAGLGFA 132
A A L ++A +VEE AKA A+ + + GI+DGV+ GFA
Sbjct: 111 ATATADPASADTLGATVIAPVVEESAKAAAVLLVFLFRRRDFTGIVDGVVVAGVTATGFA 170
Query: 133 ATENLLY-GLGYGL-QVT-------------IQRALLTPIGHATWSAIVGVGYGLKAEG- 176
TEN+LY G +G Q+T R +++P H ++ + G+G+G+ A
Sbjct: 171 FTENILYLGTAFGTDQLTGDSGIASVTAATFFVRVVMSPFAHPLFTVLTGIGFGIAALST 230
Query: 177 ------KVFTTIPYFTLAILLHFLWDYYAFMSTVSPVYYLMILLIFTINIVIIRWLVILG 230
+ + LA+ +H LW+ A ++ + + ++ WLVI
Sbjct: 231 GRHRLRRALLPLAGLLLAMGMHALWNGSAAFGEYG--FFAVYAAFMVPSFGLLTWLVIWT 288
Query: 231 KREDM 235
++ ++
Sbjct: 289 RQREL 293
>gb|AAG20660.1| (AE005135) Vng2625c [Halobacterium sp. NRC-1]
Length = 385
Score = 70.6 bits (170), Expect = 2e-11
Identities = 71/246 (28%), Positives = 104/246 (41%), Gaps = 40/246 (16%)
Query: 20 IYFAYAPALALLWYFYHQDRLEPEPKRIVLGTFLLGGTLSVGVALILES----VLVPRWF 75
+ + APALA+ Y + D EP +++ TF+ G L G A + + VL
Sbjct: 85 VLLSVAPALAVAGYIWLADATGQEPIELLVATFVFG-FLFAGFAAAINAMSSVVLFGSSD 143
Query: 76 PRIPALLPATF-LYVALVAGIVEEPAKALAIR-YAYNSGQLYGIMDGVIYGVAAGLGFAA 133
P + AT L+ LV G VEE K LA+R Y + S + ++DG +YG AGLGFA
Sbjct: 144 PMTGSTAVATSALFYFLVVGPVEEIVKWLAVRLYVFRSDEFDTVVDGAVYGAMAGLGFAT 203
Query: 134 TENLLYGL----------------GYGLQVTIQRALLTPIGHATWSAIVGVGYGLK---- 173
EN +Y L QV R L P GH +SA G GL
Sbjct: 204 VENAIYILREVMSVMQTAGGQQATEVAFQVAALRTLAGP-GHVIYSAFAGYYLGLAKFNP 262
Query: 174 -------AEGKVFTTIPYFTLAILLHFLWDYYAFMSTVSPVYYLMILLIFTINIVIIRWL 226
+G V T+ + T + L F+ V +L+ ++ + +L
Sbjct: 263 DDAGPIVVKGLVTATLIHATYNTAVTNLKPVAEFVGVAQGVAFLVFVIAYD-----GVFL 317
Query: 227 VILGKR 232
+LGK+
Sbjct: 318 AVLGKK 323
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.148 0.472
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94821062
Number of Sequences: 2977
Number of extensions: 3983868
Number of successful extensions: 12523
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 12510
Number of HSP's gapped (non-prelim): 11
length of query: 249
length of database: 189,106,746
effective HSP length: 47
effective length of query: 202
effective length of database: 160,977,857
effective search space: 32517527114
effective search space used: 32517527114
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 164 (68.3 bits)