BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0038 (PAB0038) DE:Hypothetical protein
         (152 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75193 hypothetical protein PAB0038 - Pyrococcus abyssi (st...   308  3e-83
pir||B71226 hypothetical protein PH0068 - Pyrococcus horikoshii ...   182  1e-45

>pir||H75193 hypothetical protein PAB0038 - Pyrococcus abyssi (strain Orsay)
           >gi|5457508|emb|CAB48999.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 152
           
 Score =  308 bits (780), Expect = 3e-83
 Identities = 152/152 (100%), Positives = 152/152 (100%)

Query: 1   MSSMIDAVELVVGSYVDNLCKGVKVATTKGVAYLLVGRREYPLIEGSVPPTLHIYTREGH 60
           MSSMIDAVELVVGSYVDNLCKGVKVATTKGVAYLLVGRREYPLIEGSVPPTLHIYTREGH
Sbjct: 1   MSSMIDAVELVVGSYVDNLCKGVKVATTKGVAYLLVGRREYPLIEGSVPPTLHIYTREGH 60

Query: 61  LFIYSFWRSNEREHEAFIKASLTRVHLLKNGLLIEPHGTLEKFDAYVLIKLLGPRDMFNL 120
           LFIYSFWRSNEREHEAFIKASLTRVHLLKNGLLIEPHGTLEKFDAYVLIKLLGPRDMFNL
Sbjct: 61  LFIYSFWRSNEREHEAFIKASLTRVHLLKNGLLIEPHGTLEKFDAYVLIKLLGPRDMFNL 120

Query: 121 LKRIINEEKFMAKEENGEVVSTYLEEYLKTRR 152
           LKRIINEEKFMAKEENGEVVSTYLEEYLKTRR
Sbjct: 121 LKRIINEEKFMAKEENGEVVSTYLEEYLKTRR 152


>pir||B71226 hypothetical protein PH0068 - Pyrococcus horikoshii
           >gi|3256454|dbj|BAA29137.1| (AP000001) 153aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 153
           
 Score =  182 bits (458), Expect = 1e-45
 Identities = 86/149 (57%), Positives = 111/149 (73%), Gaps = 1/149 (0%)

Query: 1   MSSMIDAVELVVGSYVDNLCKGVKVATTKGVAYLLVGRREYPLIEGSVPPTLHIYTREGH 60
           M   +  VE VVGSYV +LC+GVKV   +GVAYLL+G+++YP+IEGS PP LH Y R+G 
Sbjct: 1   MKDTVGTVETVVGSYVKDLCEGVKVLMARGVAYLLIGKKKYPIIEGSTPPLLHFYVRDGC 60

Query: 61  LFIYSFWRSNEREHEAFIKASLTRVHLLKNGLLIEPHGTLEKFDAYVLIKLLGPRDMFNL 120
           L +YSFWR    EHEA IK +L +VH++K+G+L+EPHG L+KFDA+VLIK+  P+ + NL
Sbjct: 61  LTVYSFWRDKGEEHEAAIKVTLDKVHIIKDGILVEPHGALKKFDAFVLIKITEPKGISNL 120

Query: 121 LKRIINEEKFMAKEENGEVVSTYLEEYLK 149
           L  II EE++      GEV STYLEEYLK
Sbjct: 121 LDTIIKEEEWKG-VGGGEVASTYLEEYLK 148


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.140    0.401 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55680752
Number of Sequences: 2977
Number of extensions: 2278732
Number of successful extensions: 4363
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4360
Number of HSP's gapped (non-prelim): 2
length of query: 152
length of database: 189,106,746
effective HSP length: 53
effective length of query: 99
effective length of database: 157,386,935
effective search space: 15581306565
effective search space used: 15581306565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)