BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0040 (PAB0040) DE:Hypothetical protein
(295 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75194 hypothetical protein PAB0040 - Pyrococcus abyssi (st... 564 e-160
pir||D71226 hypothetical protein PH0070 - Pyrococcus horikoshii ... 444 e-124
gi|11499147 conserved hypothetical protein [Archaeoglobus fulgid... 117 2e-25
sp|P37511|YYAM_BACSU HYPOTHETICAL 32.9 KD PROTEIN IN TETB-EXOA I... 108 1e-22
pir||G72760 hypothetical protein APE0076 - Aeropyrum pernix (str... 100 3e-20
gi|11497882 conserved hypothetical protein [Archaeoglobus fulgid... 88 1e-16
sp|P71360|YHBE_HAEIN HYPOTHETICAL PROTEIN HI0878 >gi|1573895|gb|... 87 3e-16
pir||D81082 conserved hypothetical protein NMB1459 [imported] - ... 86 6e-16
pir||C81862 conserved hypothetical protein NMA1671 [imported] - ... 85 9e-16
gi|11498121 conserved hypothetical protein [Archaeoglobus fulgid... 84 2e-15
dbj|BAB06466.1| (AP001516) unknown conserved protein in others [... 84 2e-15
emb|CAC12588.1| (AL445067) conserved hypothetical membrane prote... 84 2e-15
pir||E82830 conserved hypothetical protein XF0250 [imported] - X... 83 5e-15
dbj|BAB05650.1| (AP001513) unknown conserved protein [Bacillus h... 82 8e-15
pir||T30575 hypothetical protein - Bacillus megaterium (fragment... 82 1e-14
sp|O31540|YETK_BACSU HYPOTHETICAL 35.8 KD PROTEIN IN LPLD-PEL IN... 82 1e-14
pir||B83243 hypothetical protein PA3222 [imported] - Pseudomonas... 79 7e-14
pir||D81359 probable integral membrane protein Cj0860 [imported]... 78 9e-14
pir||F72211 conserved hypothetical protein - Thermotoga maritima... 78 2e-13
dbj|BAB04109.1| (AP001508) unknown conserved protein [Bacillus h... 77 3e-13
dbj|BAB05460.1| (AP001513) unknown conserved protein [Bacillus h... 76 4e-13
sp|P38943|YCAY_CLOKL HYPOTHETICAL 33.5 KD PROTEIN IN CAT1 5'REGI... 76 5e-13
emb|CAC11164.1| (AL445063) hypothetical membrane protein [Thermo... 75 8e-13
sp|P96661|YDED_BACSU HYPOTHETICAL 35.3 KD PROTEIN IN CSPC-NAP IN... 75 1e-12
gi|10954909 Hypothetical gene [Agrobacterium tumefaciens] >gi|64... 75 1e-12
emb|CAA07834.1| (AJ008006) hypothetical protein [Escherichia coli] 74 2e-12
emb|CAC11367.1| (AL445063) PAGO protein related protein [Thermop... 74 2e-12
sp|P31437|YICL_ECOLI HYPOTHETICAL 33.1 KD PROTEIN IN SELC-NLPA I... 73 3e-12
pir||H82541 conserved hypothetical protein XF2573 [imported] - X... 72 9e-12
pir||D71024 hypothetical protein PH1489 - Pyrococcus horikoshii ... 71 1e-11
pir||F75109 hypothetical protein PAB0461 - Pyrococcus abyssi (st... 71 2e-11
sp|P72732|YD19_SYNY3 HYPOTHETICAL 36.5 KD PROTEIN SLL1319 >gi|74... 70 3e-11
dbj|BAB04444.1| (AP001509) unknown conserved protein [Bacillus h... 70 3e-11
emb|CAB76251.1| (X82447) CoxK protein [Oligotropha carboxidovorans] 70 4e-11
sp|O32256|YVBV_BACSU HYPOTHETICAL 32.8 KD PROTEIN IN ARAR-LACA I... 69 5e-11
pir||H64907 probable membrane protein ydeD - Escherichia coli >g... 69 8e-11
sp|P31125|YDED_ECOLI HYPOTHETICAL 32.3 KDA PROTEIN IN MARB-DCP I... 69 8e-11
>pir||B75194 hypothetical protein PAB0040 - Pyrococcus abyssi (strain Orsay)
>gi|5457510|emb|CAB49001.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 295
Score = 564 bits (1439), Expect = e-160
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MVSFKISERLIRESRYSKAMRGGYILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVT 60
MVSFKISERLIRESRYSKAMRGGYILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVT
Sbjct: 1 MVSFKISERLIRESRYSKAMRGGYILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVT 60
Query: 61 FALVFLFIYLKAKGMPILIPRERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYT 120
FALVFLFIYLKAKGMPILIPRERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYT
Sbjct: 61 FALVFLFIYLKAKGMPILIPRERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYT 120
Query: 121 APAYSTIFGRLIFKEEITQRKLIAVALVIAGVLILNSGEISFTGKAIAVGLASGLTYALY 180
APAYSTIFGRLIFKEEITQRKLIAVALVIAGVLILNSGEISFTGKAIAVGLASGLTYALY
Sbjct: 121 APAYSTIFGRLIFKEEITQRKLIAVALVIAGVLILNSGEISFTGKAIAVGLASGLTYALY 180
Query: 181 GVFAKMAVNKEEPEQVLFNVLLIGAIFLLPFTSFKVPLQSVPYLLALAFFPTFLGYILYN 240
GVFAKMAVNKEEPEQVLFNVLLIGAIFLLPFTSFKVPLQSVPYLLALAFFPTFLGYILYN
Sbjct: 181 GVFAKMAVNKEEPEQVLFNVLLIGAIFLLPFTSFKVPLQSVPYLLALAFFPTFLGYILYN 240
Query: 241 RALKSVEVSRASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAILARSE 295
RALKSVEVSRASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAILARSE
Sbjct: 241 RALKSVEVSRASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAILARSE 295
>pir||D71226 hypothetical protein PH0070 - Pyrococcus horikoshii
>gi|3256456|dbj|BAA29139.1| (AP000001) 275aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 275
Score = 444 bits (1129), Expect = e-124
Identities = 220/272 (80%), Positives = 250/272 (91%)
Query: 23 GYILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVTFALVFLFIYLKAKGMPILIPRE 82
GY+LVFLAASMWGTLGIFAKFLY++NLSTYTI+FYRV FAL+FLFIYLK K +PILIP+E
Sbjct: 3 GYLLVFLAASMWGTLGIFAKFLYRYNLSTYTIVFYRVIFALIFLFIYLKIKKIPILIPKE 62
Query: 83 RLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQRKL 142
RLKFYI Y FFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTI G+LIF EEI ++KL
Sbjct: 63 RLKFYIAYGFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTILGKLIFNEEINKKKL 122
Query: 143 IAVALVIAGVLILNSGEISFTGKAIAVGLASGLTYALYGVFAKMAVNKEEPEQVLFNVLL 202
+AV LVI GV+ LN G ISF+ KAI GL SG TYALYGVFAKMAV+KEEPE+VLFNVLL
Sbjct: 123 LAVILVIGGVISLNYGGISFSLKAIVAGLTSGFTYALYGVFAKMAVSKEEPERVLFNVLL 182
Query: 203 IGAIFLLPFTSFKVPLQSVPYLLALAFFPTFLGYILYNRALKSVEVSRASVVATIEPVVA 262
IGAIFL+PFT FK+P +S+PYL+ALAFFPTFLGYILYN ALK+VEVS+ASV+ATIEPVVA
Sbjct: 183 IGAIFLIPFTDFKIPPESLPYLIALAFFPTFLGYILYNTALKTVEVSKASVIATIEPVVA 242
Query: 263 MVLAFLIFGEKLTIIQLIGASMIIGGAILARS 294
M LAF+IFGE+L+I+QLIGASMIIGGA+LA++
Sbjct: 243 MTLAFIIFGEELSIVQLIGASMIIGGALLAKT 274
>gi|11499147 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6136694|sp|O28720|YF52_ARCFU HYPOTHETICAL PROTEIN
AF1552 >gi|7483140|pir||G69443 conserved hypothetical
protein AF1552 - Archaeoglobus fulgidus
>gi|2649008|gb|AAB89694.1| (AE000995) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 270
Score = 117 bits (290), Expect = 2e-25
Identities = 85/281 (30%), Positives = 148/281 (52%), Gaps = 18/281 (6%)
Query: 18 KAMRGGYILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVTFA-LVFLFIYLKAKGMP 76
+ MR G + L+A + GT+ +F + T ++ F R+ F L L L+ G P
Sbjct: 5 RCMRYGEAAIVLSAVLMGTVSVFVR---NVGGDTLSVTFLRLFFGFLAVLPFCLRDVGRP 61
Query: 77 ILIPRERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEE 136
+ + A F+ FL + Y ++ + V+ A L+LY AP Y I ++ E
Sbjct: 62 D-------RTLLGLAVFN-FLTVASYIAAIQSTEVAMAALLLYMAPVY-VIPLSVLMGER 112
Query: 137 ITQRKLIAVALVIAGVLILNS--GEISFTGKAIAVGLASGLTYALYGVFAKMAVNKEEPE 194
+ + L+A+ L + G+ ++ + E++F I G+ SGL+YA+ V +K A K P
Sbjct: 113 VEVKTLLALPLGLIGLYLMLTPYAELTF---GIIFGIVSGLSYAIVFVLSKEARKKHSPW 169
Query: 195 QVLFNVLLIGAIFLLPFTSFKVPLQSVPYLLALAFFPTFLGYILYNRALKSVEVSRASVV 254
++ F L +G+ LLP+ + S + + L PT + ++L++ +K V+V RA ++
Sbjct: 170 RITFYNLGLGSAALLPYFLMFGRVGSWLWAIGLGVVPTAVPFVLFSYGMKYVKVQRAPIL 229
Query: 255 ATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAILARSE 295
A IEP+ A ++ + FGE LT+ QLIG +MI+ G ++A E
Sbjct: 230 ALIEPLCAGLVGYFYFGETLTLTQLIGGAMILAGVLIAWRE 270
>sp|P37511|YYAM_BACSU HYPOTHETICAL 32.9 KD PROTEIN IN TETB-EXOA INTERGENIC REGION
>gi|2127011|pir||S66005 conserved hypothetical protein
yyaM - Bacillus subtilis >gi|467365|dbj|BAA05211.1|
(D26185) unknown [Bacillus subtilis]
>gi|2636628|emb|CAB16118.1| (Z99124) similar to
hypothetical proteins [Bacillus subtilis]
Length = 305
Score = 108 bits (266), Expect = 1e-22
Identities = 75/270 (27%), Positives = 136/270 (49%), Gaps = 26/270 (9%)
Query: 47 FNLSTYTIIFYRVTFALVFLFIYLKAKGMPILIPRERLK---------FYIIYAFFSIFL 97
FNL+ YT+ ++ + + + F A + ILI E +K YI+ IF
Sbjct: 21 FNLAKYTVGYFSPSSSAAWRFGLAAAVMLIILIFTEGIKKSQLRKNAVSYIVLGIIGIFG 80
Query: 98 FYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQRKLIAVALVIAGV-LILN 156
F +L+F +K +S L++ P + I R+I K+ +T+++++ + GV L++
Sbjct: 81 FNALFFVGLKYTSPVNGALIMGLNPLLTAILARIILKDNMTKKQVLGIFFAFIGVLLVIT 140
Query: 157 SGEISFTGKAIAVG------LASGLTYALYGVFAKMAVNKEEPEQVLFNVLLIGAIFLLP 210
G I T K +++ + +ALYGV + V P ++IGA+ L+
Sbjct: 141 QGSIE-TIKTLSISGGDLIIFTGNVCWALYGVLGRRFVKDGTPLSTTTYTMVIGAVSLIV 199
Query: 211 ---FTSFKVPLQSVPY-----LLALAFFPTFLGYILYNRALKSVEVSRASVVATIEPVVA 262
FTS V L ++P + +AFF + LGY+ +N+ +K + S+ S+ + PVV
Sbjct: 200 VSLFTSKPVSLSNIPIGVWGAIAFMAFFTSVLGYLWWNQGIKEIGASKTSLFFNLVPVVT 259
Query: 263 MVLAFLIFGEKLTIIQLIGASMIIGGAILA 292
M+++F + G + + Q+IGA ++I G + A
Sbjct: 260 MIISFAV-GTPIKVFQVIGAVLVILGVLTA 288
>pir||G72760 hypothetical protein APE0076 - Aeropyrum pernix (strain K1)
>gi|5103464|dbj|BAA78985.1| (AP000058) 296aa long
hypothetical protein [Aeropyrum pernix]
Length = 296
Score = 100 bits (246), Expect = 3e-20
Identities = 82/280 (29%), Positives = 131/280 (46%), Gaps = 23/280 (8%)
Query: 23 GYILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVT----FALVFLFIYLKAKGMPIL 78
G AA +W T+G+ + T T+I R AL L IY + +P
Sbjct: 23 GVAAALTAALLWSTIGVVQRLAEARGADTETLIVGRTLGGSLLALALLAIY---RAVPT- 78
Query: 79 IPRERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEIT 138
R F + A + Y Y +V I + A L+LYTAPA+ + G + E +
Sbjct: 79 ----RRSFAV--AVLGLAPLYYTYMMSVSIVGAAVASLLLYTAPAWVALLGTVFLGETPS 132
Query: 139 QRKLIAVALVIAGVLILNSGEISFTGK----AIAVGLASGLTYALYGVFAKMAVNKEEP- 193
R ++ + L +AG +++ G G+ I +G+ASG YALY V A+ ++
Sbjct: 133 VRDVVTIILGLAGAALVSLGGEGKAGELRLLGIVLGVASGFFYALYIVMARFFQSRGAGV 192
Query: 194 -EQVLFNVLLIGAIFLLPFTSFKVPLQSVPYLLALAF--FPTFLGYILYNRALKSVEVSR 250
E L + L G + + +P SV ++ F F Y+L AL+ +E R
Sbjct: 193 MEVSLAPIALTGPLLGVALKP-SLPPNSVEVAASIYFAVFTMVTPYLLNVYALRRIEAHR 251
Query: 251 ASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAI 290
SV++ IEP+ A++LA L+ GE LT +Q +G +I+ A+
Sbjct: 252 VSVMSLIEPLSAVLLAVLLLGEDLTALQALGGVLILAAAL 291
>gi|11497882 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6136504|sp|O29973|Y266_ARCFU HYPOTHETICAL PROTEIN
AF0266 >gi|7482983|pir||B69283 conserved hypothetical
protein AF0266 - Archaeoglobus fulgidus
>gi|2650369|gb|AAB90963.1| (AE001087) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 276
Score = 87.8 bits (214), Expect = 1e-16
Identities = 69/276 (25%), Positives = 131/276 (47%), Gaps = 22/276 (7%)
Query: 24 YILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVTFALVFLFIYLKAKGMPILIPRER 83
+I++ L + WG K+ +F LS I R A + I+I +R
Sbjct: 4 WIVLALTVTFWGLAFTAIKYSVRF-LSPIAIASLRFAIANTLFAV--------IIILGKR 54
Query: 84 LKFYIIYAFFSIFLF-YSLYFYTVKISSV----SFAVLMLYTAPAYSTIFGRLIFKEEIT 138
+K+ + F++ +F S+Y + + V A +++ AP + I + +E IT
Sbjct: 55 IKWKDLPKVFALGIFGVSVYHVFLNLGEVYISSGVASVVISLAPIFVLILSAIFLRERIT 114
Query: 139 QRKLIAVALVIAGVLILNSGEISFTG-KAIAVGLASGLTYALYGVFAKMAVNKEEPEQVL 197
K++ + + GV++++ E S+ IA+ + S + A+Y F K ++K P +
Sbjct: 115 YSKVVGIIIAFLGVVVIS--EPSYANIYGIALVMVSTVAAAIYTTFGKSLLSKYNPITLT 172
Query: 198 FNVLLIGAIFLLPFTSFKV-----PLQSVPYLLALAFFPTFLGYILYNRALKSVEVSRAS 252
N +++G+I L PF + L + ++ L F TF GY+ + L+ E SRAS
Sbjct: 173 SNAMVLGSIPLYPFLPDSIRSLGGDLNLIGSIVFLGIFSTFFGYLGWYYFLEKEEASRAS 232
Query: 253 VVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGG 288
V PVV+++ ++ E LT+ + G+ +++ G
Sbjct: 233 VFLLAIPVVSLLAGNILLAEPLTLRTVAGSGLVLLG 268
>sp|P71360|YHBE_HAEIN HYPOTHETICAL PROTEIN HI0878 >gi|1573895|gb|AAC22534.1| (U32769)
conserved hypothetical protein [Haemophilus influenzae
Rd]
Length = 306
Score = 86.6 bits (211), Expect = 3e-16
Identities = 72/288 (25%), Positives = 130/288 (45%), Gaps = 19/288 (6%)
Query: 23 GYILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVTFALVFLFIYLK-AKGMPILIPR 81
G+ + A WG+L I K + ++ TI++YR A V L L K +P L+
Sbjct: 8 GFTFALITAMAWGSLPIALKQVLSV-MNAQTIVWYRFIIAAVSLLALLAYKKQLPELMKV 66
Query: 82 ERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQRK 141
+ + ++ + + L+ ++ S A + ++ + I G LIFKE++ +
Sbjct: 67 RQYAWIMLIGVIGLTSNFLLFSSSLNYIEPSVAQIFIHLSSFGMLICGVLIFKEKLGLHQ 126
Query: 142 LIAVALVIAGV-LILNSGEISFTG-----KAIAVGLASGLTYALYGVFAKMAVNKEEPEQ 195
I + L++ G+ L N +F G + +G+ L + YG+ K+ + K +Q
Sbjct: 127 KIGLFLLLIGLGLFFNDRFDAFAGLNQYSTGVILGVGGALIWVAYGMAQKLMLRKFNSQQ 186
Query: 196 VLFNVLLIGAIFLLPFTSFKVPLQSVPYLLALAFF---PTFLGYILYNRALKSVEVSRAS 252
+L + L AI +P F + P L + T +GY Y AL +VS+ S
Sbjct: 187 ILLMMYLGCAIAFMPMADFSQVQELTPLALICFIYCCLNTLIGYGSYAEALNRWDVSKVS 246
Query: 253 VVATIEPVVAMVLAFL--------IFGEKLTIIQLIGASMIIGGAILA 292
VV T+ P+ ++ + + +L I IGA +++ GAIL+
Sbjct: 247 VVITLVPLFTILFSHIAHYFSPADFAAPELNNISYIGAFVVVCGAILS 294
>pir||D81082 conserved hypothetical protein NMB1459 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226700|gb|AAF41818.1| (AE002495) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 307
Score = 85.8 bits (209), Expect = 6e-16
Identities = 76/294 (25%), Positives = 131/294 (43%), Gaps = 29/294 (9%)
Query: 23 GYILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVTFALVFLFIYLKAKGMPILIPRE 82
G+ L LAA WGTL I + + KF + T+++ R T A LF+ L G +P+
Sbjct: 9 GFALALLAAMTWGTLPIAVRQVLKF-VDAPTLVWVRFTVAAAVLFVLLALGGR---LPKR 64
Query: 83 RLKFY-----IIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEI 137
R + ++ I + L + S + ++ +P + G L+FK+ +
Sbjct: 65 RDFSWCSFRLLLLGVAGISANFVLIAQGLHYISPTTTQVLWQISPFTMIVVGVLVFKDRM 124
Query: 138 TQRKLIAVALVIAGVLILNS---GEISFTG---KAIAVGLASGLTYALYGVFAKMAVNKE 191
T + I + L++AG+L+ + GE+S G K + + A + + Y V K+ +
Sbjct: 125 TAAQKIGLVLLLAGLLMFFNDKFGELSGLGAYAKGVLLCAAGSMAWVCYAVAQKLLSAQF 184
Query: 192 EPEQVLFNVLLIGAIFLLPFTSFKVPLQSVPYLLALAFFP-----TFLGYILYNRALKSV 246
P+Q+L + A LPF + S+ LA F T +GY + ALK
Sbjct: 185 GPQQILLLIYAASAAVFLPFAE-PAHIGSLDGTLAWVCFAYCCLNTLIGYGSFGEALKHW 243
Query: 247 EVSRASVVATIEPVVAMVLAFL--------IFGEKLTIIQLIGASMIIGGAILA 292
E S+ S V T+ PV ++ + L + + GA +++GGA+ A
Sbjct: 244 EASKVSAVTTLLPVFTVIFSLLGHYVMPDTFAAPDMNGLGYAGALIVVGGAVTA 297
>pir||C81862 conserved hypothetical protein NMA1671 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7380313|emb|CAB84899.1| (AL162756) conserved
hypothetical protein [Neisseria meningitidis Z2491]
Length = 307
Score = 85.0 bits (207), Expect = 9e-16
Identities = 76/294 (25%), Positives = 131/294 (43%), Gaps = 29/294 (9%)
Query: 23 GYILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVTFALVFLFIYLKAKGMPILIPRE 82
G+ L LAA WGTL I + + KF + T+++ R T A LF+ L G +P+
Sbjct: 9 GFALALLAAMTWGTLPIAVRQVLKF-VDAPTLVWVRFTVAAAVLFVLLALGGR---LPKW 64
Query: 83 RLKFY-----IIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEI 137
R + ++ I + L + S + ++ +P + G L+FK+ +
Sbjct: 65 RDFSWCSFRLLLLGVAGISANFVLIAQGLHYISPTTTQVLWQISPFTMIVVGVLVFKDRM 124
Query: 138 TQRKLIAVALVIAGVLILNS---GEISFTG---KAIAVGLASGLTYALYGVFAKMAVNKE 191
T + I + L++AG+L+ + GE+S G K + + A + + Y V K+ +
Sbjct: 125 TAAQKIGLVLLLAGLLMFFNDKFGELSGLGAYAKGVLLCAAGSMAWVCYAVAQKLLSAQF 184
Query: 192 EPEQVLFNVLLIGAIFLLPFTSFKVPLQSVPYLLALAFFP-----TFLGYILYNRALKSV 246
P+Q+L + A LPF + S+ LA F T +GY + ALK
Sbjct: 185 GPQQILLLIYAASAAVFLPFAEL-AHIGSLDGTLAWVCFAYCCLNTLIGYGSFGEALKHW 243
Query: 247 EVSRASVVATIEPVVAMVLAFL--------IFGEKLTIIQLIGASMIIGGAILA 292
E S+ S V T+ PV ++ + L + + GA +++GGA+ A
Sbjct: 244 EASKVSAVTTLLPVFTVIFSLLGHYVMPDTFAAPDMNGLGYAGALVVVGGAVTA 297
>gi|11498121 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6136536|sp|O29740|Y510_ARCFU HYPOTHETICAL PROTEIN
AF0510 >gi|7483020|pir||F69313 conserved hypothetical
protein AF0510 - Archaeoglobus fulgidus
>gi|2650107|gb|AAB90720.1| (AE001068) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 289
Score = 84.3 bits (205), Expect = 2e-15
Identities = 72/286 (25%), Positives = 130/286 (45%), Gaps = 19/286 (6%)
Query: 24 YILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVTFA--LVFLFIYLKAKGMPILIPR 81
++L+ L +W IF K K L + + FYR A L+ +++ K +G+
Sbjct: 6 HLLLALTMLIWAGSFIFIKIGLK-ELDPFNLAFYRFLLASPLLMAWVFWK-RGLAKPSGS 63
Query: 82 ERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQRK 141
E L ++ A + L Y+ F +K ++ + A +++ T+ + ++G + K E RK
Sbjct: 64 EWLHLSVL-ALSGVTLLYAFQFLALKYTTATNASILINTSAVFVALWG--LVKGEANPRK 120
Query: 142 LIAVALVIAGV-LILNSGEISFTGKAIAVG----LASGLTYALYGVFAKMAVNKEEPEQV 196
L V L AGV LI++ G + F G + G +A+Y V + K + E +
Sbjct: 121 LAGVFLSFAGVVLIVSKGTLEFFSSKTIFGDVLMIVDGFLWAVYTVLGSKMLLKYDHETL 180
Query: 197 LFNVLLIGAIFLLPF---TSFKVPL----QSVPYLLALAFFPTFLGYILYNRALKSVEVS 249
+G IFL+PF + F P+ ++V LL L+ + Y+++ AL + + +
Sbjct: 181 TAYAFALGTIFLIPFALMSGFANPVTFNPETVAALLYLSILCSVFAYVVWYYALTNADST 240
Query: 250 RASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAILARSE 295
+V + P+ + AF EK IG + I G L ++
Sbjct: 241 SVAVYVYLVPLFTAIFAFYALNEKPDFFTAIGGIITIAGVYLTTAK 286
>dbj|BAB06466.1| (AP001516) unknown conserved protein in others [Bacillus
halodurans]
Length = 302
Score = 84.3 bits (205), Expect = 2e-15
Identities = 70/263 (26%), Positives = 126/263 (47%), Gaps = 19/263 (7%)
Query: 40 FAKFLYKFNLSTYTII-FYRVTFALVFL--FIYLKAKGMPILIPRERLKFYIIYAFFSIF 96
FA K++ + TI+ YR+ FA L ++ K L + L F+ F +
Sbjct: 23 FAAIFVKWSEAPATILSMYRMYFACFLLVPIVWGKRDEFKRLTKNDWLLFFGAGLFLA-- 80
Query: 97 LFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQRKLIAVALVIAGVLILN 156
L ++L+F ++K+++V+ + ++L P + G + FKE ++ L+ +A+ + G +++
Sbjct: 81 LHFALWFGSLKLTTVASSTIILALQPIVALSLGFIFFKERASRHILVTMAVAVLGAIMVG 140
Query: 157 SGEISFTGKAIAVGLASGLT---YALYGVFAKMAVNKEEPEQVLFNVLLIGAIFL----- 208
G+I + +AI L S L+ Y + + V K F+V A+ L
Sbjct: 141 WGDIGLSQQAIIGDLLSFLSVIAVVCYLIIGQSVVKKVSHWIYSFSVFAFAALLLTIYNL 200
Query: 209 ---LPFTSFKVPLQSVPYLLALAFFPTFLGYILYNRALKSVEVSRASVVATIEPVVAMVL 265
+PFT + LQ L LA PT + ++++N L V + S+ EPV A L
Sbjct: 201 ITSVPFTGY--DLQEWGIFLLLAIVPT-IAHVIHNWLLNYVNATTISMSILGEPVGATAL 257
Query: 266 AFLIFGEKLTIIQLIGASMIIGG 288
A + GE L + Q+IG+ ++ G
Sbjct: 258 AIVFLGESLNVWQVIGSLFVLSG 280
>emb|CAC12588.1| (AL445067) conserved hypothetical membrane protein [Thermoplasma
acidophilum]
Length = 299
Score = 84.3 bits (205), Expect = 2e-15
Identities = 70/280 (25%), Positives = 130/280 (46%), Gaps = 35/280 (12%)
Query: 31 ASMWGTLGIFAKFLYKFNLSTYTIIFYR-VTFALVFLFIYLKAKGMPILIPRERLKFYII 89
+++WG G + L+ S Y + F VT +VF + L A G + ++ L +++
Sbjct: 17 SALWGLSGTVSSILF----SRYGMPFSTLVTIRMVFSGLILLAAGRGF-VGKKDLPMFLV 71
Query: 90 YAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQRKLIAVALVI 149
+A +F LY T+ S+ A L+ + ++ + + ++A+ +
Sbjct: 72 FAIPGLFGVQILYLATISFSNAPVATLLQFLFFPMVAVYDYITIRSLTVSSLILALIFSV 131
Query: 150 AGVLILNSG--------EISFTGKAIAVGLASGLTYALYGVFAKMAVNKEEPEQVLFNVL 201
AG+ L +G IS T A+ +GLA+ T ALY V + V + + + + +
Sbjct: 132 AGIYELTTGFPLGGTALRISLT--ALILGLATAATAALYTVTSARIVKEYGGLRTVASGM 189
Query: 202 LIGAIFLLPFTSFKVPLQSVPY-----------LLALAF----FPTFLGYILYNRALKSV 246
++G + LP SF VPY +LAL F T + + LY +++ +
Sbjct: 190 MVGGLVSLPLGSF----SGVPYFHGLGQADVIPVLALTIFVIVFGTSMAFYLYINSMRYI 245
Query: 247 EVSRASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMII 286
A+V T EPV A + ++L+ G KL+ +Q +G ++I+
Sbjct: 246 SPVEAAVSGTFEPVAAAMSSYLLLGIKLSAMQYLGGALIV 285
>pir||E82830 conserved hypothetical protein XF0250 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9105063|gb|AAF83063.1|AE003878_11 (AE003878)
conserved hypothetical protein [Xylella fastidiosa]
Length = 304
Score = 82.7 bits (201), Expect = 5e-15
Identities = 74/292 (25%), Positives = 134/292 (45%), Gaps = 22/292 (7%)
Query: 17 SKAMRGGYILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVTFALVFLFIYLKA-KGM 75
S +R + + + +WG IF K + L ++++R+T +V L + + +G+
Sbjct: 4 SSKVRTAQLQIHVCVLLWGFTAIFGKLI---TLEALPLVWWRMTIVVVSLVLLPRVWRGL 60
Query: 76 PILIPRERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKE 135
L PR L + I A + L + ++ VK+++ S A + AP ++ + +
Sbjct: 61 RALHPRVMLAYAGIGAL--VALHWLAFYSAVKLANASVAATCIALAPVFTAVVEPCVVGR 118
Query: 136 EITQRKLIAVALVIAGVLILNSGEISFTGKAIAVGLASGLTYALYGVFAKMAVNKEEPEQ 195
R+L+ +V+ GV ++ G I +G+ S L AL+G K V +P
Sbjct: 119 PFRARELLLGLMVLPGVALVVGGVPDGMRIGIFIGVVSALLAALFGSLNKRMVVHADPLT 178
Query: 196 VLFNVL------LIGAIFLLPF---TSFKVPLQ-----SVPYLLALAFFPTFLGYILYNR 241
V L L G + LL T ++P Q V LL L+F T L + L
Sbjct: 179 VTALELGAGILTLTGLMLLLSLVFSTLHEMPWQIPSAHDVFLLLILSFACTLLPFALSLV 238
Query: 242 ALKSVEVSRASVVATIEPVVAMVLAFLIFGE--KLTIIQLIGASMIIGGAIL 291
AL+ + +V +EPV ++ LA ++ GE +LT + +G ++++G +L
Sbjct: 239 ALRYLSAYSLQLVTNLEPVYSIALAIVLLGEQRELTGLFYLGVAVVLGVVLL 290
>dbj|BAB05650.1| (AP001513) unknown conserved protein [Bacillus halodurans]
Length = 304
Score = 81.9 bits (199), Expect = 8e-15
Identities = 71/278 (25%), Positives = 126/278 (44%), Gaps = 23/278 (8%)
Query: 25 ILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVTFALVFLFIYLKA------KGMPIL 78
I + +AA MWGT G A+ I R+ + LFI++ A +G P+L
Sbjct: 8 IFILIAAMMWGTTGT-AQVFAPAEAHPIIIGASRLAVGGLALFIFVMAQRKFQLRGWPVL 66
Query: 79 IPRERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFA-VLMLYTAPAYSTIFGRLIFKEEI 137
A S+ + +F V I+ V+ V+ + +AP + + +I ++
Sbjct: 67 PT--------FIAALSMAAYQPFFFSAVSITGVAVGTVVAIGSAPIIAGLLDWVIQRKPP 118
Query: 138 TQRKLIAVALVIAGVLILN--SGEISFTGKAIAVGLASGLTYALYGVFAKMAVNKEEPEQ 195
IA L IAG L+L E++ + + + +GL++A+Y +K + ++ E
Sbjct: 119 GPTWGIATILAIAGCLLLTLPGEEVTVSPVGFLLAIGAGLSFAVYTAASKKLLQQQPSEA 178
Query: 196 VLFNVLLIGAIFLLPF-----TSFKVPLQSVPYLLALAFFPTFLGYILYNRALKSVEVSR 250
V+ V + A+FL+P S+ + + +L L T + Y+L+ R L V S
Sbjct: 179 VVAVVFSLSALFLVPLFFLYDLSWLTEFRGIIVVLHLGIVATAIAYLLFTRGLTGVASST 238
Query: 251 ASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGG 288
A +A EP+ A +L + GE L+ I G +++ G
Sbjct: 239 AVTLALAEPLTAALLGVFLVGEALSFIAWGGVLLLLLG 276
>pir||T30575 hypothetical protein - Bacillus megaterium (fragment)
>gi|3970650|emb|CAA04271.1| (AJ000733) hypothetical
protein [Bacillus megaterium]
Length = 296
Score = 81.5 bits (198), Expect = 1e-14
Identities = 68/281 (24%), Positives = 128/281 (45%), Gaps = 12/281 (4%)
Query: 23 GYILVFLAASMWGTLGIFAKFLYK---FNLSTYTIIFYRVTFALVFLFIYLKAKGMPILI 79
G +LV + A+MWG G A++L++ FN ++ V+ L+ + I
Sbjct: 6 GLLLVIIGATMWGVSGTVAQYLFQHKSFNAEWLVVVRMLVSGLLLLAIASKQRNIFAIWK 65
Query: 80 PRERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQ 139
+E +++ + YF ++ + + A ++ YT+P + + + ++ +
Sbjct: 66 TKEERTSLLLFGVIGMLGVQYTYFAAIEAGNAATATVLQYTSPIFIIGYLAVQARKWPVK 125
Query: 140 RKLIAVALVIAGVLIL----NSGEISFTGKAIAVGLASGLTYALYGVFAKMAVNK-EEPE 194
++I+V LVIAG L N E+S TG A+ G+ + +T A Y + K + K E
Sbjct: 126 VEMISVVLVIAGTFFLATSGNFNELSITGWALFWGIGAAVTSAFYTLQPKRLLAKWSSIE 185
Query: 195 QVLFNVLLIGAIFLLPFTSFKV----PLQSVPYLLALAFFPTFLGYILYNRALKSVEVSR 250
V + +++ GA F + + L S+ +L + F T + + Y +LK + S
Sbjct: 186 VVGWGMVIGGASFSFIHPPWHIAGEWSLLSLCAVLFVIIFGTLIAFYCYLESLKHISASE 245
Query: 251 ASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAIL 291
A V+A+ EP+ A L+ L + +G +II L
Sbjct: 246 AIVLASREPLSAAALSVLWLHVTFGWTEWLGTILIIATVFL 286
>sp|O31540|YETK_BACSU HYPOTHETICAL 35.8 KD PROTEIN IN LPLD-PEL INTERGENIC REGION
>gi|7429476|pir||H69798 conserved hypothetical protein
yetK - Bacillus subtilis >gi|2633034|emb|CAB12540.1|
(Z99107) similar to hypothetical proteins from B.
subtilis [Bacillus subtilis]
Length = 330
Score = 81.5 bits (198), Expect = 1e-14
Identities = 65/286 (22%), Positives = 133/286 (45%), Gaps = 16/286 (5%)
Query: 18 KAMRGGYILVFLAASMWGTLGIFAKFLY-KFNLSTYTIIFYRVTFALVFLFIYLKAKGMP 76
K G Y+ + A ++ G+ + K + + + + + + + ++ + ++ KG P
Sbjct: 24 KKQMGAYVSLAAAMAIVGSSVVVGKLMVERIPVFLSSGLRFLIASVVLLMLLFCIEKGFP 83
Query: 77 ILIPRERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEE 136
L ++ + ++ +F +FLF Y V+ ++ + + ++ T P I + +E+
Sbjct: 84 ALTKKD-VFVLLVQSFTGVFLFSICLLYGVQYTTGTESGILTSTTPMLIGILSFFLLREK 142
Query: 137 ITQRKLIAVALVIAGVLILN---SGEISFTGKAI---AVGLASGLTYALYGVFAKMAVNK 190
I ++ LI + L + GV+ +N +G T A+ + +A+ + AL+ + AK+
Sbjct: 143 IEKKTLIGILLAVCGVMAINLFGAGSQDGTPHALFGNMLIIAAVIGEALFTLMAKLLSPH 202
Query: 191 EEPEQVLFNVLLIGAIFLLPFTSFKVPL--QSVP------YLLALAFFPTFLGYILYNRA 242
+ V L G +F LPF F+ SVP Y+L A F T L + L+
Sbjct: 203 ISALAISTFVSLFGFLFFLPFALFEASSFDYSVPTVLDWSYVLYYALFVTVLAFYLWYSG 262
Query: 243 LKSVEVSRASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGG 288
+ V + + ++ PV A++L+ +I E + IG + +IGG
Sbjct: 263 VTKVPAGVSGIFTSVLPVSAVILSGVILKEPFEFVHFIGIACVIGG 308
>pir||B83243 hypothetical protein PA3222 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9949343|gb|AAG06610.1|AE004745_7
(AE004745) hypothetical protein [Pseudomonas aeruginosa]
Length = 299
Score = 78.8 bits (191), Expect = 7e-14
Identities = 73/272 (26%), Positives = 129/272 (46%), Gaps = 26/272 (9%)
Query: 31 ASMWGTLGIFAKFLYKFNLSTYTIIFYRVTFALVFLFIYLKAKGMP--ILIPRERLKFYI 88
A ++G G+F K + S I+F R FA++ L ++ + G L P + L+
Sbjct: 14 ALLFGLTGVFGKLA---SASPGVIVFGRALFAVLALGLFARLAGQAWRALGPAQWLRL-- 68
Query: 89 IYAFFSIFL--FYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQRKLIAVA 146
A + L + +F VK + V+ A L + PA++ I L+F+E I + + V
Sbjct: 69 --ALCGLLLAGHWVSFFIAVKTAGVAIATLGFASFPAFTVILEGLLFRERIHLAEGLLVV 126
Query: 147 LVIAGVLILNSGEISFTGKAIAV--GLASGLTYALYGVFAKMAVNKEEPEQVLFNVLLIG 204
LV G++++ +G + + + SGL +AL + + + P Q L+
Sbjct: 127 LVSLGLVLVTPNFDLASGATLGLLWAILSGLLFALLSLANRSNSGQVGPVQAALWQNLVV 186
Query: 205 AIFLLPFTSFKVPLQSVP-----YLLALAFFPTFLGYILYNRALKSVEVSRASVVATIEP 259
A+ LLPF ++P ++P +L L F T L + L+ +L V+ A++V +EP
Sbjct: 187 ALCLLPFAVSELP--ALPALDWLWLALLGVFCTGLAHSLFVASLAVVKARTAALVFALEP 244
Query: 260 VVAMVLAFLIFGEKLTIIQLIGASMIIGGAIL 291
V + A+L+F E G M +GGA++
Sbjct: 245 VYGIAFAWLLFHE------TPGPRMFLGGALI 270
>pir||D81359 probable integral membrane protein Cj0860 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968306|emb|CAB73125.1| (AL139076) probable integral
membrane protein [Campylobacter jejuni]
Length = 290
Score = 78.4 bits (190), Expect = 9e-14
Identities = 67/288 (23%), Positives = 129/288 (44%), Gaps = 26/288 (9%)
Query: 23 GYILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRV-TFALVFLFIYLKAKGMPILIPR 81
G LV L W G+ A++L+K N S + FYR+ + L+ +F+ KA+ + +
Sbjct: 2 GVFLVLLGGIFWAISGVLAEYLFKNNYSVDWVCFYRLLSTGLILIFLSFKAQKILVFTNL 61
Query: 82 ERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQRK 141
+ ++ FF + L YF + + A ++ Y AP ++ L FK + +
Sbjct: 62 KESLSICMFGFFGLLLTQFGYFKAIYYTDAGTATMIQYCAPLIIMLY--LCFKNKKFPKL 119
Query: 142 LIAVALVI---AGVLILNSGEISFTGKAIAVGLASGLTYALYGVFAKMAVNKEEPEQVL- 197
+ AL++ A L+ G+I +A+ + G+ +A+ G F + E +L
Sbjct: 120 IEIFALILIIFALFLLATKGDI----EAVVLNYW-GIFWAVIGAFGVAFYSLSAREVILK 174
Query: 198 --------FNVLLIGAIFLL------PFTSFKVPLQSVPYLLALAFFPTFLGYILYNRAL 243
+ L +FLL + L++ + + F T + LY + +
Sbjct: 175 YGLFWIMGWASLFASFVFLLILQFDKGLIHYAFNLKAFFSMGGIVFIGTIGAFCLYLKGV 234
Query: 244 KSVEVSRASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAIL 291
+ + RAS++A+IEPV A +++FL + +++ + +II IL
Sbjct: 235 EYIGALRASMIASIEPVAAALMSFLFLKTRYSLLDIFAFVLIILSVIL 282
>pir||F72211 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982366|gb|AAD36850.1|AE001816_7 (AE001816)
conserved hypothetical protein [Thermotoga maritima]
Length = 273
Score = 77.6 bits (188), Expect = 2e-13
Identities = 67/261 (25%), Positives = 125/261 (47%), Gaps = 17/261 (6%)
Query: 40 FAKFLYKFN-LSTYTIIFYRVTFALVFLFIYLKAKGMPILIPRERLKFYIIYAFFSIFLF 98
F+ L K + L TI FYRV A +F F+ + + LK ++ FL
Sbjct: 16 FSGILIKLSSLPPATIAFYRVFIASLFFFLVKRR------VELFSLKKEVLSLATGFFLA 69
Query: 99 YSLYFYTVKIS--SVSFAVLMLYTAPAYSTIFGRLIFKEEITQRKLIAVALVIAGVLILN 156
+F+ + +V+ AV+ L P + + L++ E ++ +++ ++V+AGV++
Sbjct: 70 MHFFFWVSAFNHTTVAGAVIPLTLQPVLTGLLSWLVYGERLSPFRIVTGSMVVAGVVLAL 129
Query: 157 SGEISFTGKA-----IAVGLASGLTYALYGVFAKMAVNKEEPEQVLFNVLLIGAIFLLPF 211
+G+ F+G + +G+ Y + G + A+ + FL+P
Sbjct: 130 AGKEGFSGISRGDLLAVIGVVFFCGYLVLGRYLNRAMGSMNFSLKTHALASTVLAFLVP- 188
Query: 212 TSFKV-PLQSVPYLLALAFFPTFLGYILYNRALKSVEVSRASVVATIEPVVAMVLAFLIF 270
SF+V + L+ L +FLGY+L N +LK + S VV EPV++++ +FL+
Sbjct: 189 -SFRVVEAREWFILIGLGVGCSFLGYLLINLSLKYLPSSVVGVVLVGEPVLSILWSFLLL 247
Query: 271 GEKLTIIQLIGASMIIGGAIL 291
GE +T ++IG + + G +L
Sbjct: 248 GETVTFFEIIGFIVAMIGLVL 268
>dbj|BAB04109.1| (AP001508) unknown conserved protein [Bacillus halodurans]
Length = 311
Score = 76.9 bits (186), Expect = 3e-13
Identities = 55/245 (22%), Positives = 115/245 (46%), Gaps = 16/245 (6%)
Query: 62 ALVFLFIYLKAKGMPILIPRERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTA 121
AL+ + + LK +G+P +E + + A +FLF Y + ++ +++ T
Sbjct: 46 ALILVPMLLKKEGIPTFSKKE-VGILFLQALSGVFLFSIFMLYGLMYTTAMEGGIIMSTL 104
Query: 122 PAYSTIFGRLIFKEEITQRKLIAVALVIAGVLILN-SGEISFTGKAIA------VGLASG 174
PA + + KE++T+ +I + L + G L +N SG +S + +A + + +
Sbjct: 105 PAVVALMAFITLKEKLTRLTIIGILLAVGGTLAINTSGTLSDVERGVAPLLGNLLIIGAV 164
Query: 175 LTYALYGVFAKMAVNKEEPEQVLFNVLLIGAIFLLPFTSF---KVPLQSV---PYLLALA 228
++ AL+ +F K + P + V + G + LPF + + PL V +L+
Sbjct: 165 ISEALFIIFGKSISQRVSPLAISTMVSVFGVVLFLPFAIYEATRFPLTDVSLNDWLIIFY 224
Query: 229 F--FPTFLGYILYNRALKSVEVSRASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMII 286
F T + ++L + ++ V S V+ + P+ A++L+ LI E + + G +++
Sbjct: 225 FGVVVTVIAFVLMYQGIEKVPASTVGVLTGVLPISAVLLSALILKESFSTFHVAGMGLVL 284
Query: 287 GGAIL 291
+L
Sbjct: 285 AAILL 289
>dbj|BAB05460.1| (AP001513) unknown conserved protein [Bacillus halodurans]
Length = 306
Score = 76.5 bits (185), Expect = 4e-13
Identities = 72/283 (25%), Positives = 126/283 (44%), Gaps = 18/283 (6%)
Query: 24 YILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVTFA-LVFLFIYLKAKGMPILIPRE 82
Y LVF +WG + K L + T+ R+ A V L + L K L E
Sbjct: 7 YFLVFFVMVLWGLNVVMLKLLVT-SFPPVTMTALRIFVAGFVVLLVLLLLKTFRQLTATE 65
Query: 83 RLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQRKL 142
K+ I+ A F + + + ++S S AVL+L P +++ L+ + +T+ +
Sbjct: 66 -WKYVILAAIFGVLGHHFFLSIGLTMTSASNAVLILALLPLTTSLLAILLLGDMLTRWRG 124
Query: 143 IAVALVIAGVL-ILNSGEISFTGKAIAVGLA--SGLTYALYGVFAKMAVNKEEPEQVLFN 199
+ L + GV I+ GE G G+ + + AL V+ K A + + +QV
Sbjct: 125 FGIFLGLIGVCTIVLFGEGGLAGIRTGDGVIFLAMMIQALSFVYIKKATDTLDAKQVTGM 184
Query: 200 VLLIGAIFLLPFTSFKVPLQSVPYL-----------LALAFFPTFLGYILYNRALKSVEV 248
+LLIG++ L TSF + + + + A F T LG+I+YN+A+ +
Sbjct: 185 MLLIGSLLLF-VTSFIIEPNGLASMGDKALWIWWVFVISAVFATGLGHIIYNQAIHQLGT 243
Query: 249 SRASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAIL 291
++ + P ++ + L GE + + Q+ G I+ G IL
Sbjct: 244 GETAIFNNLVPFFGLLFSALFLGEAIALAQIAGLLFIVAGVIL 286
>sp|P38943|YCAY_CLOKL HYPOTHETICAL 33.5 KD PROTEIN IN CAT1 5'REGION (ORFY)
>gi|403384|gb|AAA92345.1| (L21902) orfY; putative
membrane protein [Clostridium kluyveri]
Length = 311
Score = 76.1 bits (184), Expect = 5e-13
Identities = 73/293 (24%), Positives = 130/293 (43%), Gaps = 25/293 (8%)
Query: 20 MRGGYILVFLAASMWGTLGIFAKFLYKFN----LSTYTIIFYRVTFALVFLFIYLK-AKG 74
M+ GYI + L A + T I K L + I+F + A++ L + +K K
Sbjct: 1 MKKGYIFILLTAIFYSTQEISGKMLAQKGAMDPFQVMMIVF--LIGAIILLPMAVKDIKV 58
Query: 75 MPILIPRERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFK 134
+ + L + + ++ + S+ + V + S A ++ T ++ F I K
Sbjct: 59 KKLKLTGNDLGYLALCGILAVSISMSMLQFAVTYTKASTAAVLFCTNAVFTIPFAYFILK 118
Query: 135 EEITQRKLIAVALVIAGVLILNSGEISFTGKA-------IAVGLASGLTYALYGVFAKMA 187
E+I ++++ + + GV+I+ + G I L + + ++LY V +K
Sbjct: 119 EKIKGITIVSIIVSLIGVVIIFNPAKVMEGIGGSRDLIGICFALVAAVVWSLYTVISKKR 178
Query: 188 VNKEEPEQVLFNVL-----LIGAIFLLPFTSFKV----PLQSVPYLLALAFFPTFLGYIL 238
+ E +FN + +I + LL T + L ++ LL + F +GYI
Sbjct: 179 I--EIYGGYVFNCISFFFGVIALLILLVVTGRPIFSGITLNNILVLLYMGIFIKAVGYIC 236
Query: 239 YNRALKSVEVSRASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAIL 291
Y A+K AS V I+P +A VLA LI GE + + +IG II G+I+
Sbjct: 237 YLGAIKETSAVTASTVFLIKPALATVLAILILGESIEVNVVIGIVFIIIGSII 289
>emb|CAC11164.1| (AL445063) hypothetical membrane protein [Thermoplasma acidophilum]
Length = 259
Score = 75.3 bits (182), Expect = 8e-13
Identities = 59/236 (25%), Positives = 118/236 (50%), Gaps = 10/236 (4%)
Query: 55 IFYRVTFALVFLFIYLKAKGMPILIPRERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFA 114
+F+RV + +FL+ K L R ++ ++ + + + + +FY + + VS
Sbjct: 7 VFFRVLVSFLFLYSLYGRK----LNIRNMGRWPVLVSGILVGINWISFFYALTMMPVSDV 62
Query: 115 VLMLYTAPAYSTIFGRLIFKEEITQRKLIAVALVIAGVLILNSGEISFTGKAIAVGLASG 174
V++ Y+ PA + I+ + E+ + + + A ++++ + V L SG
Sbjct: 63 VVIYYSGPAIA-IYLSFLVGEKPNRMAVAGGSFSFAAIVLMFLQSLHVNLVGFLVALISG 121
Query: 175 LTYALYGVFAKMAVNK-EEPEQVLFN---VLLIGAIFLLPFTSFKVPLQSVPYLLALAFF 230
++YA+ + ++ AV+ + VL+ VL++ A FL F F + +S+ LL
Sbjct: 122 ISYAMIAIASRKAVDHVSSSDLVLYQTIIVLIMTAPFLF-FMKFSLNYESMLLLLFAGIM 180
Query: 231 PTFLGYILYNRALKSVEVSRASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMII 286
T L IL+ + + + + SV++ ++PV A+V AFLI G+K I ++ SMI+
Sbjct: 181 QTGLALILWYDSQRRIGIQTVSVLSYLDPVFAVVFAFLILGQKPGDIAIVSISMIL 236
>sp|P96661|YDED_BACSU HYPOTHETICAL 35.3 KD PROTEIN IN CSPC-NAP INTERGENIC REGION
>gi|7429474|pir||F69777 conserved hypothetical protein
ydeD - Bacillus subtilis >gi|1881324|dbj|BAA19351.1|
(AB001488) FUNCTION UNKNOWN, SIMILAR PRODUCT IN E.COLI.
[Bacillus subtilis] >gi|2632816|emb|CAB12323.1| (Z99106)
similar to hypothetical proteins [Bacillus subtilis]
Length = 319
Score = 74.9 bits (181), Expect = 1e-12
Identities = 64/285 (22%), Positives = 128/285 (44%), Gaps = 20/285 (7%)
Query: 21 RGGYILVFLAASMWGTLGIFAKFLYK-FNLSTYTIIFYRVTFA---LVFLFIYLKAKGMP 76
R G V A+ WG G AK L++ + + ++ R+ A L+ L ++ K +
Sbjct: 7 RMGLFYVITGATCWGIGGTVAKKLFQEYQIDVNWLVTTRLLTAGMLLLMLQLFRKDRSQV 66
Query: 77 ILIPRERLKF--YIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFK 134
I + + + +I+ + Y +++ + + A L+ Y +P I+ L +
Sbjct: 67 IEVWKHKASAGQLLIFGLLGMLAVQYTYMASIQHGNAAVATLLQYLSPVIVIIYTLLRKQ 126
Query: 135 EEITQRKLIAVALVIAGVLIL----NSGEISFTGKAIAVGLASGLTYALYGVFAKMAVNK 190
+T++ +I V L + G L + ++S A+ G+ SG A Y ++A +NK
Sbjct: 127 TVLTKQDIITVVLALVGCFFLLTNGSMSQLSVPAAAVVWGVLSGFAAAFYTLYAVGLLNK 186
Query: 191 EEPEQVLFNVLLIGAIFL--------LPFTSFKVPLQSVPYLLALAFFPTFLGYILYNRA 242
+ V+ ++IG L L F ++ ++ Y+L + F T + + + ++
Sbjct: 187 FDSLVVVGWAMIIGGFALGFIHPPWQLDFQ--RLTAEAYAYILFVILFGTMIAFWFFIKS 244
Query: 243 LKSVEVSRASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIG 287
L+S+ S++ ++EP+ A+V + Q IGA IIG
Sbjct: 245 LESLSPKETSLLGSLEPLSAVVTTVVWLKAPFGSFQWIGAICIIG 289
>gi|10954909 Hypothetical gene [Agrobacterium tumefaciens]
>gi|6498262|dbj|BAA87714.1| (AB016260) Hypothetical gene
[Agrobacterium tumefaciens]
Length = 306
Score = 74.5 bits (180), Expect = 1e-12
Identities = 66/278 (23%), Positives = 125/278 (44%), Gaps = 15/278 (5%)
Query: 27 VFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVTFALVFLFIYLKAKGMPILIPRERLKF 86
+ L ++WG FA + ++ YRV+ A + L I+L+ +G+ +
Sbjct: 17 LLLLGALWGGSFFFAHIAVA-EIPPLALVLYRVSIAALVLHIWLRLRGLSFAPVLAKPMS 75
Query: 87 YIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEE-ITQRKLIAV 145
++ A + + +SL F A + T P ++ + ++ +E ++ KL V
Sbjct: 76 FLFLALLNNVIPFSLIFTGQTAIGAGLASVFYATTPLWTILVANVLTADEKLSAVKLAGV 135
Query: 146 ALVIAGVLI-LNSGEIS-FTGKAIA--VGLASGLTYALYGVFAKMAVNKEEPEQVLFNVL 201
AL I G + + G +S +G A A + + ++YA V+AK P V L
Sbjct: 136 ALGIVGTAVTIGPGLLSDLSGPAWAKFAVIGAAISYAFAVVYAK-GFKDISPTVVAAGQL 194
Query: 202 LIGAIFLLP-----FTSFKVPLQSVPY---LLALAFFPTFLGYILYNRALKSVEVSRASV 253
+ ++P ++ + S P +LALA F T +ILY + S + AS+
Sbjct: 195 TGATVLMVPVVLALYSPASIVTSSGPIWLSVLALAIFTTAFAFILYFNLIASAGATNASL 254
Query: 254 VATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAIL 291
V + P A++L+ E+L + +L+G ++I+ I+
Sbjct: 255 VTLLVPASAIMLSSAFLDERLEVFELVGMTLIMVSLII 292
>emb|CAA07834.1| (AJ008006) hypothetical protein [Escherichia coli]
Length = 291
Score = 73.7 bits (178), Expect = 2e-12
Identities = 62/275 (22%), Positives = 124/275 (44%), Gaps = 24/275 (8%)
Query: 23 GYILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVTFALV--FLFIYLKAKGMPILIP 80
G + FLAA WG + +K + L + F+++ A++ ++ +++K K +P+
Sbjct: 7 GMLFAFLAAFSWGAAIVMSKKGVE-ELDAGGVFFWQICSAVILSWIVLFIKRKKLPL--- 62
Query: 81 RERLKFYIIYA--FFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEIT 138
K + YA F FL Y+ Y + S A ++ + + LI +I
Sbjct: 63 --NSKAILAYATGVFEPFLAYTFTLYGLYFISAGSASIIFSLESVFILVLSVLICSVKIN 120
Query: 139 QRK---LIAVALVIAGVLI----LNSGEISFTGKAIAVGLASGLTYALYGVFAKMAVNKE 191
+ L + ++ +L+ +++G + G + V A L+ A Y V + +
Sbjct: 121 SPQYFILFLIGAIVGSILVALPDISNGSNNIVGYCLVV--AGVLSAAFYVVISSRLIKSF 178
Query: 192 EP-----EQVLFNVLLIGAIFLLPFTSFKVPLQSVPYLLALAFFPTFLGYILYNRALKSV 246
EP Q+ F+++L + +S +PL+SV + + FL + Y +L+ +
Sbjct: 179 EPITLLSGQLTFSLILSSLFIFISKSSIYLPLESVIIVFSSGILQYFLAFCFYLNSLRWL 238
Query: 247 EVSRASVVATIEPVVAMVLAFLIFGEKLTIIQLIG 281
V A ++ P+VA+ L++L E+ T +Q +G
Sbjct: 239 PVHLAGIMLYFIPLVALFLSWLFLDEQFTFLQGVG 273
>emb|CAC11367.1| (AL445063) PAGO protein related protein [Thermoplasma acidophilum]
Length = 285
Score = 73.7 bits (178), Expect = 2e-12
Identities = 65/281 (23%), Positives = 136/281 (48%), Gaps = 14/281 (4%)
Query: 22 GGYILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVTFALVF-LFIYLKAKGMPILIP 80
G +L F A WG I K+ Y +++S+ +I+ RV +ALVF I+++ P P
Sbjct: 5 GEPVLFFFMAFFWGLNYIMVKYAYVYDVSS-SILLMRVLYALVFSAIIFVRQIRFP-RTP 62
Query: 81 RERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQR 140
E LK +++ + +I F++L+F+ S S +++Y+ P S + + + +
Sbjct: 63 MEHLKVFVL-SNLNITAFFALWFFGETGVSASLTSIVIYSYPIMSLVASYALLNDRFGRG 121
Query: 141 KLIAVALVIAGVLILNSGEISFTGKA-IAVGLASGLTYALYGVFAKMAVNKEEPE--QVL 197
K + +AL AG++I+ I+ + + + + + L++A+ VF + + + L
Sbjct: 122 KAMGIALGFAGLIIIFFRSINVSNYIDLIMLILAALSWAMGTVFYRKFLTGYDSAGLNTL 181
Query: 198 FNVLLIGAIFLLPF------TSFKVPLQSVPYLLALAFFPTFLGYILYNRALKSVEVSRA 251
+ + A+ L+ F + +P Q +L + T + Y ++ + VS
Sbjct: 182 QLLYAMPAVILIAFMTGGINRNLMIP-QFNLIMLYMGSLGTAVAYFIFLTLYRRYRVSDI 240
Query: 252 SVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAILA 292
S I P ++++L+ ++ E ++ I LIG +++ G L+
Sbjct: 241 SAFFFIVPAISVILSVILLHEAVSRIMLIGFAVMSVGIYLS 281
>sp|P31437|YICL_ECOLI HYPOTHETICAL 33.1 KD PROTEIN IN SELC-NLPA INTERGENIC REGION
>gi|7429475|pir||E65167 hypothetical 33.1 kD protein in
nlpA 5' region - Escherichia coli (strain K-12)
>gi|290509|gb|AAA62012.1| (L10328) o307 [Escherichia
coli] >gi|1790092|gb|AAC76683.1| (AE000443) putative
permease transporter [Escherichia coli K12]
Length = 307
Score = 73.4 bits (177), Expect = 3e-12
Identities = 67/284 (23%), Positives = 128/284 (44%), Gaps = 13/284 (4%)
Query: 21 RGGYILVFLAASMWGTLGIFAKFLYKFN-LSTYTIIFYRVTFALVFLFIYLKAKGMPILI 79
R G + V +AA +WG+ G+ A+++ + + +S+ + R+ FA + L G I
Sbjct: 5 RKGMLNVLIAAVLWGSSGVCAQYIMEQSQMSSQFLTMTRLIFAGLILLTLSFVHGDKIFS 64
Query: 80 PRERLKFYIIYAFFSIFLFYSL---YFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEE 136
K I FS+ ++ + T++ S+ + A ++ + +P + L+ K
Sbjct: 65 IINNHKDAISLLIFSVVGALTVQLTFLLTIEKSNAATATVLQFLSPTIIVAWFSLVRKSR 124
Query: 137 ITQRKLIAVALVIAGVLIL----NSGEISFTGKAIAVGLASGLTYALYGVFAKMAVNKEE 192
A+ + G +L N +S + A+ G+AS A Y + + +
Sbjct: 125 PGILVFCAILTSLVGTFLLVTHGNPTSLSISPAALFWGIASAFAAAFYTTYPSTLIARYG 184
Query: 193 PEQVLFNVLLIGAIFLLPFTSFKVPLQSVPYLLALAFF-----PTFLGYILYNRALKSVE 247
V+ +LIG + LLPF + + V L LAFF T L + LY + + +
Sbjct: 185 TLPVVGWSMLIGGLILLPFYARQGTNFVVNGSLILAFFYLVVIGTSLTFSLYLKGAQLIG 244
Query: 248 VSRASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAIL 291
+AS+++ EP+ + +L+ L+ G T+ +G +I+ IL
Sbjct: 245 GPKASILSCAEPLSSALLSLLLLGITFTLPDWLGTLLILSSVIL 288
>pir||H82541 conserved hypothetical protein XF2573 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107787|gb|AAF85370.1|AE004064_12 (AE004064)
conserved hypothetical protein [Xylella fastidiosa]
Length = 311
Score = 71.8 bits (173), Expect = 9e-12
Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 8/274 (2%)
Query: 20 MRGGYILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYRVTFALVFLFIYLKAKGMPILI 79
+R +++F S +G + I ++ + T I F+R F L+ L + G P+
Sbjct: 9 LRAAMLMLFSTLS-FGMMAITIRYA-STQIPTTEIAFFRNAFGLLVLLPLILGPGKPL-- 64
Query: 80 PRERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQ 139
PR + I + F+ + ++ A+ + Y+ P ++TI L E +
Sbjct: 65 PRTQHGPRYIARSMLGLISMLCNFWAISHLPLTQAITLSYSTPLFATILAALWLHEVVRL 124
Query: 140 RKLIAVALVIAGVLILNSGEISFTGKAIAVGLASGLTYALYGVFAKMAVNKEEPEQVLF- 198
R+L+A+ AG+L+L S + V LA+ + A+ + K + + P+ V+
Sbjct: 125 RRLLAILAGFAGILVLLQPWSSTFSPTLLVALAAAILNAVITIQMKQLSHLDPPDTVVLY 184
Query: 199 -NVLLIGAIFLLPFTSFKVPL-QSVPYLLALAFFPTFLGYILYNRALKSVEVSRASVVAT 256
+ LL + P +L+A F T +G +L+ RAL+ EVS +
Sbjct: 185 TYAFWVPLSLLLALWQWHWPAGVEWVWLIATGIFGT-IGQLLWIRALRLGEVSALQPIGF 243
Query: 257 IEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAI 290
++ + +L + +FGE L +GAS+IIG +
Sbjct: 244 MQLPLVTLLGWWLFGEYLDRYTALGASIIIGANV 277
>pir||D71024 hypothetical protein PH1489 - Pyrococcus horikoshii
>gi|3257913|dbj|BAA30596.1| (AP000006) 298aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 298
Score = 71.4 bits (172), Expect = 1e-11
Identities = 64/277 (23%), Positives = 125/277 (45%), Gaps = 21/277 (7%)
Query: 29 LAASMWGTLGIFAKFLYKFNLSTYTIIFYRVTFALVFLFIYLKAKGMPILIPRERLKFYI 88
LA +W T+ K L T +++FY + V +F+ K + + L +
Sbjct: 30 LAVLLWSTVASAFKLTLS-RLDTISMLFYSSLTSTV-IFLLANLKDIKTFSIKANLNS-V 86
Query: 89 IYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQRKLIAVALV 148
+ F + FL+Y + F I A + YT P IF + +++R + V +
Sbjct: 87 FFGFINPFLYYLVLFSAYSILPAQEAQALNYTWPIILVIFSSAFLGQRLSERDFLGVIIG 146
Query: 149 IAGVLILNS-GEISFTGKAIAVG----LASGLTYALYGVFAKMAVNKEEPEQV---LFNV 200
G L++ + G +S A +G L S + +A+Y + K E + + +F
Sbjct: 147 FLGALVVGTRGNLSSLHFANPMGDLLALCSAIIWAIYWILNLRDPRKAEVKMMWNFIFGF 206
Query: 201 LLIGAIFLLPFTSFKVPLQSVPY-LLALAFFPTF---LGYILYNRALKSVEVSRASVVAT 256
L I + ++ F PY +L + TF L ++L+ +AL+S E + + +
Sbjct: 207 LYISILGVIEGIKFD------PYGVLGAIYVGTFEMGLTFLLWLKALESEEAGKVASLIY 260
Query: 257 IEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAILAR 293
+ PV++++ ++ GEK+ ++G ++I+ G L+R
Sbjct: 261 LTPVLSLLFISIVVGEKILGSTIVGLALILLGIALSR 297
>pir||F75109 hypothetical protein PAB0461 - Pyrococcus abyssi (strain Orsay)
>gi|5458102|emb|CAB49591.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 278
Score = 71.0 bits (171), Expect = 2e-11
Identities = 64/277 (23%), Positives = 127/277 (45%), Gaps = 13/277 (4%)
Query: 25 ILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYR-VTFALVFLFIYLKAKGMPILIPRER 83
I L+ +W T+ K L +++FY +T +L+FL L +G P +
Sbjct: 5 IYAILSILLWSTVASAFKLTLS-RLDPISLLFYSSLTSSLIFLVANL-VRGNPDWKSISK 62
Query: 84 LKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQRKLI 143
+ I F + +Y + F A + YT P + + +T +++
Sbjct: 63 NRESAILGFVNPLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLGQRLTLKEIG 122
Query: 144 AVALVIAGVLILNS-GEISFTGKAIAVG----LASGLTYALYGVFAKMAVNKEEPEQV-L 197
V + G+LI+ + G +S + VG ++S L +A+Y V M VN + P +V +
Sbjct: 123 GVIVGFIGILIVGTRGNLSSLRFSDPVGDGLAISSALLFAVYWV---MNVNDKRPPEVKM 179
Query: 198 FNVLLIGAIFLLP-FTSFKVPLQSVPYLLALAFFPTFLGYILYNRALKSVEVSRASVVAT 256
F G ++LLP K L + + + F + Y+L+ +AL++ + + + +
Sbjct: 180 FWNFAFGTLYLLPNIPRIKFDLLGLLGAIYIGLFEMGVTYLLWLKALETDKAGKVASMVY 239
Query: 257 IEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAILAR 293
+ PV+++ + GEK+ + L+G S+I+ G +++
Sbjct: 240 LTPVLSLFFISTVVGEKIMLSTLVGLSLILLGIFISQ 276
>sp|P72732|YD19_SYNY3 HYPOTHETICAL 36.5 KD PROTEIN SLL1319 >gi|7470055|pir||S74595
hypothetical protein sll1319 - Synechocystis sp. (strain
PCC 6803) >gi|1651820|dbj|BAA16747.1| (D90900)
hypothetical protein [Synechocystis sp.]
Length = 329
Score = 70.2 bits (169), Expect = 3e-11
Identities = 45/203 (22%), Positives = 94/203 (46%), Gaps = 10/203 (4%)
Query: 93 FSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQRKLIAVALVIAGV 152
F +FL+ L + ++ A+ + +T P ++ + +F + + + + + L + G
Sbjct: 105 FLMFLYLVLLYISISFIPTGIAITLFFTYPIFTALLAWRLFNDVPSLLRWLVIGLTLIGT 164
Query: 153 LIL----NSGEISFTGKAIAVGLASGLTYALYGVFAKMAVNKEEPEQVLF----NVLLIG 204
+ GE ++ G+ASG+ YA Y VFA+ + + P + L++
Sbjct: 165 FLTIPYAYGGEQQTLVLGVSTGIASGIVYAGYTVFAQRSFQRLHPVPFTWISFATTLILS 224
Query: 205 AIFLLPFTSFK--VPLQSVPYLLALAFFPTFLGYILYNRALKSVEVSRASVVATIEPVVA 262
+ L+ + + +P ++ L+ T G++L N + + SRA+++ P +
Sbjct: 225 ILCLIIWQPHEGNLPWLAITIGSLLSALFTLAGHVLNNWGIHLIGASRAAIIGATNPALT 284
Query: 263 MVLAFLIFGEKLTIIQLIGASMI 285
+VLA L E LT IQ+ G ++
Sbjct: 285 VVLAGLAIQESLTNIQIFGVCLV 307
>dbj|BAB04444.1| (AP001509) unknown conserved protein [Bacillus halodurans]
Length = 312
Score = 70.2 bits (169), Expect = 3e-11
Identities = 62/283 (21%), Positives = 127/283 (43%), Gaps = 20/283 (7%)
Query: 23 GYILVFLAASMWGTLGIFAKFLYK-FNLSTYTIIFYRVTFA---LVFLFIYLKAKGMPIL 78
G ILV A WG G A+ L++ +++ ++ R+ A L+ + LK +
Sbjct: 6 GVILVLTGAICWGVGGTVAQKLFQQYDVDVNWLVSTRLLAAGALLLTIQCVLKDQTQVFR 65
Query: 79 I--PRERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEE 136
+ R+ +I+ + Y ++K + + A L+ Y APA ++ + +
Sbjct: 66 VWQTRQSAGKLLIFGIVGMLAVQYTYMASIKHGNSAVATLLQYLAPAMIILYLFVRRQSP 125
Query: 137 ITQRKLIAVALVIAGVLIL----NSGEISFTGKAIAVGLASGLTYALYGVFAKMAVNKEE 192
T R + V+L + G L + ++S AI G+ SG+ A Y ++A + + +
Sbjct: 126 FTGRDFVTVSLALLGCFFLLTNGSLSQLSVPTPAIVWGILSGVALAFYTLYAVPLLKQYD 185
Query: 193 PEQVLFNVLLIGAIFL--------LPFTSFKVPLQSVPYLLALAFFPTFLGYILYNRALK 244
++ ++IG + L + F+V ++ YL + F T L + Y +L+
Sbjct: 186 SLVIVGWAMVIGGVALGIIHPPWRVDLAQFEV--ETYVYLGFVVVFGTMLAFWFYIESLQ 243
Query: 245 SVEVSRASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIG 287
++ S++ ++EP+ A+V + E + Q +G + I+G
Sbjct: 244 TLSPKETSLLGSVEPLAAVVTMIVWLHEPFSAFQWLGTACILG 286
>emb|CAB76251.1| (X82447) CoxK protein [Oligotropha carboxidovorans]
Length = 296
Score = 69.9 bits (168), Expect = 4e-11
Identities = 68/255 (26%), Positives = 123/255 (47%), Gaps = 22/255 (8%)
Query: 56 FYRVTFALVFLFIYLK-------AKGMPILIPRERLKFYIIYAFFSIFLFYSLYFYTVKI 108
F+RV+ AL+ L ++ A P+ + RE L + F I L + +
Sbjct: 45 FWRVSLALLPLGLFAALMRGQTDATATPLTL-REWLTVSVPGIFLGIELV--AWHEALYK 101
Query: 109 SSVSFAVLMLYTAPAYSTIFGRLIFKEEITQRKLIAVALVIAGVLILNS-----GEISFT 163
+SV+ A L++ P ++ FG ++F+ I + + A+V+ GV++L S G+ + +
Sbjct: 102 TSVANATLLVNLTPVFTAFFGWVLFRRPIKRVFMSGTAMVVVGVVLLVSSGWVQGKGALS 161
Query: 164 GKAIAVGLASGLTYALYGVFAKMAVNKEEPEQVLFNVLLIGAIFLLPFTSFK---VPLQS 220
G AIA+G A + YA Y + A + V+F + LP + VP
Sbjct: 162 GDAIALGAA--VIYAGYFMSLGYARQRFSSAVVMFASSASATLITLPLALAEGIFVPASP 219
Query: 221 VPY--LLALAFFPTFLGYILYNRALKSVEVSRASVVATIEPVVAMVLAFLIFGEKLTIIQ 278
+ ++ALA+ G L A+ + + +S+ I+P VA +A+ +F E L+ +Q
Sbjct: 220 AGWATVVALAWIVQVGGQGLVTFAIAWLPPTISSLAMLIQPFVAAAIAWGLFEEHLSALQ 279
Query: 279 LIGASMIIGGAILAR 293
++G +IGG ++AR
Sbjct: 280 IVGGVAVIGGILIAR 294
>sp|O32256|YVBV_BACSU HYPOTHETICAL 32.8 KD PROTEIN IN ARAR-LACA INTERGENIC REGION
>gi|7474757|pir||F70030 conserved hypothetical protein
yvbV - Bacillus subtilis >gi|2635913|emb|CAB15405.1|
(Z99121) similar to hypothetical proteins [Bacillus
subtilis]
Length = 305
Score = 69.5 bits (167), Expect = 5e-11
Identities = 55/226 (24%), Positives = 107/226 (47%), Gaps = 13/226 (5%)
Query: 81 RERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQR 140
+E Y++ A +I LFY L + +++ P +F L E +
Sbjct: 65 KETWPIYLVSALLNITLFYGLQTIGLNYLPAGLFSAIVFFQPVLMGVFSWLWLGESMFVM 124
Query: 141 KLIAVALVIAGVLILNS----GEISFTGKAIAVGLASGLTYALYGVFAKMAVNKEEPEQV 196
K+I + L AGV ++++ G IS G +A+G S +++AL V+ K ++ + +
Sbjct: 125 KVIGLILGFAGVAVISAAGFGGHISVIGVLLALG--SAVSWALGTVYMKKTGSRVDSIWM 182
Query: 197 LFNVLLIGAIFLLPF----TSFKVPLQSVPYLLALAFFPTF---LGYILYNRALKSVEVS 249
+ L IG++FLL SF + P++ +L F F LG++++ + S E S
Sbjct: 183 VALQLTIGSVFLLISGFWTESFSAIQWTAPFITSLLFISVFVIALGWLVFFTLVGSGEAS 242
Query: 250 RASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAILARSE 295
+ + + P++++V + + E LT+ L G +I+ L ++
Sbjct: 243 KVASYTFLIPLISIVASSIFLHEPLTLSLLAGLLLIVTSICLVNTK 288
>pir||H64907 probable membrane protein ydeD - Escherichia coli
>gi|1742515|dbj|BAA15223.1| (D90796) ORF_ID:o306#4;
similar to [SwissProt Accession Number P31125]
[Escherichia coli] >gi|1742529|dbj|BAA15235.1| (D90797)
ORF_ID:o306#4; similar to [SwissProt Accession Number
P31125] [Escherichia coli] >gi|1787813|gb|AAC74606.1|
(AE000250) orf, hypothetical protein [Escherichia coli
K12]
Length = 266
Score = 68.7 bits (165), Expect = 8e-11
Identities = 57/230 (24%), Positives = 104/230 (44%), Gaps = 23/230 (10%)
Query: 80 PRERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIF-GRLIFKEEIT 138
P+ L + Y F ++ F + + ++ A A+ TI G F E +
Sbjct: 21 PKVPLNLLLGYGLTISFAQFAFLFCAINFGMPAGLASLVLQAQAFFTIMLGAFTFGERLH 80
Query: 139 QRKLIAVALVIAGVLILNSGEISFTGKAIAV-----GLASGLTYALYGVFAKMAVNKEEP 193
++L +AL I GVL+L E S G+ +A+ LA+ ++A +F K ++
Sbjct: 81 GKQLAGIALAIFGVLVLI--EDSLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTR 138
Query: 194 EQVLFNVLLIGAIFLLPF---------------TSFKVPLQSVPYLLALAFFPTFLGYIL 238
V+ V+ I ++PF + + + ++ L+ LAF T +GY +
Sbjct: 139 PAVMSLVIWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGI 198
Query: 239 YNRALKSVEVSRASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGG 288
+ L E R + ++ + PVV + A L+ E+LT +Q +GA +I+ G
Sbjct: 199 WGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMTG 248
>sp|P31125|YDED_ECOLI HYPOTHETICAL 32.3 KDA PROTEIN IN MARB-DCP INTERGENIC REGION
Length = 299
Score = 68.7 bits (165), Expect = 8e-11
Identities = 57/230 (24%), Positives = 104/230 (44%), Gaps = 23/230 (10%)
Query: 80 PRERLKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIF-GRLIFKEEIT 138
P+ L + Y F ++ F + + ++ A A+ TI G F E +
Sbjct: 54 PKVPLNLLLGYGLTISFAQFAFLFCAINFGMPAGLASLVLQAQAFFTIMLGAFTFGERLH 113
Query: 139 QRKLIAVALVIAGVLILNSGEISFTGKAIAV-----GLASGLTYALYGVFAKMAVNKEEP 193
++L +AL I GVL+L E S G+ +A+ LA+ ++A +F K ++
Sbjct: 114 GKQLAGIALAIFGVLVLI--EDSLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTR 171
Query: 194 EQVLFNVLLIGAIFLLPF---------------TSFKVPLQSVPYLLALAFFPTFLGYIL 238
V+ V+ I ++PF + + + ++ L+ LAF T +GY +
Sbjct: 172 PAVMSLVIWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGI 231
Query: 239 YNRALKSVEVSRASVVATIEPVVAMVLAFLIFGEKLTIIQLIGASMIIGG 288
+ L E R + ++ + PVV + A L+ E+LT +Q +GA +I+ G
Sbjct: 232 WGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMTG 281
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.332 0.146 0.410
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91145605
Number of Sequences: 2977
Number of extensions: 3572821
Number of successful extensions: 15949
Number of sequences better than 1.0e-10: 37
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 15866
Number of HSP's gapped (non-prelim): 50
length of query: 295
length of database: 189,106,746
effective HSP length: 54
effective length of query: 241
effective length of database: 156,788,448
effective search space: 37786015968
effective search space used: 37786015968
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (22.0 bits)
S2: 165 (68.7 bits)