BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0041 (PAB0041) DE:Hypothetical protein
         (199 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75194 hypothetical protein PAB0041 - Pyrococcus abyssi (st...   398  e-110
pir||F71226 hypothetical protein PH0072 - Pyrococcus horikoshii ...   300  8e-81

>pir||D75194 hypothetical protein PAB0041 - Pyrococcus abyssi (strain Orsay)
           >gi|5457512|emb|CAB49003.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 199
           
 Score =  398 bits (1011), Expect = e-110
 Identities = 199/199 (100%), Positives = 199/199 (100%)

Query: 1   MLGVIFAVKLKRSDNYLIPIDDEPMLKIVERRLRLAKRIEDVITLVRKGYEKKYSLHVSN 60
           MLGVIFAVKLKRSDNYLIPIDDEPMLKIVERRLRLAKRIEDVITLVRKGYEKKYSLHVSN
Sbjct: 1   MLGVIFAVKLKRSDNYLIPIDDEPMLKIVERRLRLAKRIEDVITLVRKGYEKKYSLHVSN 60

Query: 61  VKPVKGKNIIDALLEGIPYGGELFLVKGNMPLVMPFLVNYMSTLFLEDEVDALIPRWRDG 120
           VKPVKGKNIIDALLEGIPYGGELFLVKGNMPLVMPFLVNYMSTLFLEDEVDALIPRWRDG
Sbjct: 61  VKPVKGKNIIDALLEGIPYGGELFLVKGNMPLVMPFLVNYMSTLFLEDEVDALIPRWRDG 120

Query: 121 RIEIFHAIYNARALRNALEAMKAENERDIKRLPEYLDVEYMNIDELVGRNKKVIWSFFEV 180
           RIEIFHAIYNARALRNALEAMKAENERDIKRLPEYLDVEYMNIDELVGRNKKVIWSFFEV
Sbjct: 121 RIEIFHAIYNARALRNALEAMKAENERDIKRLPEYLDVEYMNIDELVGRNKKVIWSFFEV 180

Query: 181 RTSEDLRTILNARDNLGKI 199
           RTSEDLRTILNARDNLGKI
Sbjct: 181 RTSEDLRTILNARDNLGKI 199


>pir||F71226 hypothetical protein PH0072 - Pyrococcus horikoshii
           >gi|3256458|dbj|BAA29141.1| (AP000001) 196aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 196
           
 Score =  300 bits (760), Expect = 8e-81
 Identities = 140/192 (72%), Positives = 169/192 (87%)

Query: 1   MLGVIFAVKLKRSDNYLIPIDDEPMLKIVERRLRLAKRIEDVITLVRKGYEKKYSLHVSN 60
           MLG+IFAVKLK +DNYLIPI+DEPM++I+E RLR AKRIEDVITLV+KG EKKYSLHV  
Sbjct: 2   MLGLIFAVKLKPTDNYLIPINDEPMIRILESRLRQAKRIEDVITLVKKGQEKKYSLHVEK 61

Query: 61  VKPVKGKNIIDALLEGIPYGGELFLVKGNMPLVMPFLVNYMSTLFLEDEVDALIPRWRDG 120
           VKPVKG+ IID LLEG+P GG++FL+KGNMPLVMPF VNYMST+F+E+  DALIP+W+DG
Sbjct: 62  VKPVKGRTIIDVLLEGLPSGGDIFLIKGNMPLVMPFFVNYMSTIFIEESPDALIPKWKDG 121

Query: 121 RIEIFHAIYNARALRNALEAMKAENERDIKRLPEYLDVEYMNIDELVGRNKKVIWSFFEV 180
           RIE+FHAIYNARALRNALE MKAE E++I  LP YLD EY+ +DEL+GRN+K++WSFF +
Sbjct: 122 RIELFHAIYNARALRNALEGMKAEGEKNIGNLPRYLDAEYLCVDELLGRNEKLMWSFFAI 181

Query: 181 RTSEDLRTILNA 192
           R SEDLR +L +
Sbjct: 182 RGSEDLRIVLKS 193


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.143    0.408 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71960442
Number of Sequences: 2977
Number of extensions: 2932115
Number of successful extensions: 9465
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9463
Number of HSP's gapped (non-prelim): 2
length of query: 199
length of database: 189,106,746
effective HSP length: 53
effective length of query: 146
effective length of database: 157,386,935
effective search space: 22978492510
effective search space used: 22978492510
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)