BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0042 (PAB0042) DE:Hypothetical protein
(191 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75194 hypothetical protein PAB0042 - Pyrococcus abyssi (st... 371 e-102
pir||G71226 hypothetical protein PH0073 - Pyrococcus horikoshii ... 333 6e-91
pir||F75194 hypothetical protein PAB0043 - Pyrococcus abyssi (st... 187 7e-47
pir||H71226 hypothetical protein PH0074 - Pyrococcus horikoshii ... 187 7e-47
gi|11498667 conserved hypothetical protein [Archaeoglobus fulgid... 171 5e-42
pir||E69122 conserved hypothetical protein MTH1913 - Methanobact... 171 6e-42
sp|Q57905|Y482_METJA HYPOTHETICAL PROTEIN MJ0482 >gi|2128337|pir... 166 1e-40
pir||C69008 conserved hypothetical protein MTH1064 - Methanobact... 160 1e-38
gb|AAG19872.1| (AE005071) Vng1608c [Halobacterium sp. NRC-1] 99 2e-20
>pir||E75194 hypothetical protein PAB0042 - Pyrococcus abyssi (strain Orsay)
>gi|5457513|emb|CAB49004.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 191
Score = 371 bits (943), Expect = e-102
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MARWEKIVEGVKSIAFIKSKIISRGKRIALLVDGPNILRKELGVHLEDIVEALSDLGNIR 60
MARWEKIVEGVKSIAFIKSKIISRGKRIALLVDGPNILRKELGVHLEDIVEALSDLGNIR
Sbjct: 1 MARWEKIVEGVKSIAFIKSKIISRGKRIALLVDGPNILRKELGVHLEDIVEALSDLGNIR 60
Query: 61 VAKVILNQYAPQSLIEAVSNQGFEPVIVAGEIGVKLAVEAMREVYNPNIDIIALATRNTE 120
VAKVILNQYAPQSLIEAVSNQGFEPVIVAGEIGVKLAVEAMREVYNPNIDIIALATRNTE
Sbjct: 61 VAKVILNQYAPQSLIEAVSNQGFEPVIVAGEIGVKLAVEAMREVYNPNIDIIALATRNTE 120
Query: 121 FVPIILKAKEKGKETAIIGVEPGFSSALKHAADYVIVLKPRGEVSEEGNLEDLEKGERGG 180
FVPIILKAKEKGKETAIIGVEPGFSSALKHAADYVIVLKPRGEVSEEGNLEDLEKGERGG
Sbjct: 121 FVPIILKAKEKGKETAIIGVEPGFSSALKHAADYVIVLKPRGEVSEEGNLEDLEKGERGG 180
Query: 181 GRKSENNRSDN 191
GRKSENNRSDN
Sbjct: 181 GRKSENNRSDN 191
>pir||G71226 hypothetical protein PH0073 - Pyrococcus horikoshii
>gi|3256459|dbj|BAA29142.1| (AP000001) 195aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 195
Score = 333 bits (846), Expect = 6e-91
Identities = 173/192 (90%), Positives = 183/192 (95%), Gaps = 1/192 (0%)
Query: 1 MARWEKIVEGVKSIAFIKSKIISRGKRIALLVDGPNILRKELGVHLEDIVEALSDLGNIR 60
MARWE+IVEGVKSIA IK KIISRGKRIALLVDGPNILRKELGVHLEDIVEALS LGNIR
Sbjct: 4 MARWERIVEGVKSIALIKRKIISRGKRIALLVDGPNILRKELGVHLEDIVEALSSLGNIR 63
Query: 61 VAKVILNQYAPQSLIEAVSNQGFEPVIVAGEIGVKLAVEAMREVYNPNIDIIALATRNTE 120
VAKVILNQYAPQSLIEAVSNQGFEPVIVAGEIGVKLAVEAMREVYNPNIDIIALATRNTE
Sbjct: 64 VAKVILNQYAPQSLIEAVSNQGFEPVIVAGEIGVKLAVEAMREVYNPNIDIIALATRNTE 123
Query: 121 FVPIILKAKEKGKETAIIGVEPGFSSALKHAADYVIVLKPRGEVSEEGNLEDLEKGERGG 180
FVPIILKAKEKGKETAIIGVEPGFSSALKHAADYVIVL+ RGE+SEEGN+ED+E+G+ G
Sbjct: 124 FVPIILKAKEKGKETAIIGVEPGFSSALKHAADYVIVLESRGELSEEGNIEDIEEGKGEG 183
Query: 181 GR-KSENNRSDN 191
GR + +N+R DN
Sbjct: 184 GRGRRKNDRLDN 195
>pir||F75194 hypothetical protein PAB0043 - Pyrococcus abyssi (strain Orsay)
>gi|5457514|emb|CAB49005.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 162
Score = 187 bits (470), Expect = 7e-47
Identities = 88/138 (63%), Positives = 115/138 (82%)
Query: 26 KRIALLVDGPNILRKELGVHLEDIVEALSDLGNIRVAKVILNQYAPQSLIEAVSNQGFEP 85
K I L++DGPNILRKE G+ LEDI +AL +G IRVAKV+LNQYAPQ LIEAV NQGFEP
Sbjct: 21 KTIGLIIDGPNILRKEFGIKLEDIKKALERIGKIRVAKVVLNQYAPQGLIEAVVNQGFEP 80
Query: 86 VIVAGEIGVKLAVEAMREVYNPNIDIIALATRNTEFVPIILKAKEKGKETAIIGVEPGFS 145
+IVAG+ V++A+EAM +YN ++D+IALATR+ +F+P+I +AK KGKET +IGVEPGFS
Sbjct: 81 IIVAGDTDVRMAIEAMELIYNADVDVIALATRDADFLPLISEAKRKGKETVVIGVEPGFS 140
Query: 146 SALKHAADYVIVLKPRGE 163
AL++AADY+I ++ + E
Sbjct: 141 VALQNAADYIIKMEKKKE 158
>pir||H71226 hypothetical protein PH0074 - Pyrococcus horikoshii
>gi|3256460|dbj|BAA29143.1| (AP000001) 163aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 163
Score = 187 bits (470), Expect = 7e-47
Identities = 88/138 (63%), Positives = 115/138 (82%)
Query: 26 KRIALLVDGPNILRKELGVHLEDIVEALSDLGNIRVAKVILNQYAPQSLIEAVSNQGFEP 85
K I L++DGPNILRKE G+ LEDI +AL +G IRVAKV+LNQYAPQ LIEAV NQGFEP
Sbjct: 22 KTIGLIIDGPNILRKEFGIKLEDIKKALEKIGKIRVAKVVLNQYAPQGLIEAVVNQGFEP 81
Query: 86 VIVAGEIGVKLAVEAMREVYNPNIDIIALATRNTEFVPIILKAKEKGKETAIIGVEPGFS 145
+IVAG+ V++A+EAM +YN ++D+IALATR+ +F+P+I +AK KGKET +IGVEPGFS
Sbjct: 82 IIVAGDTDVRVAIEAMELIYNTDVDVIALATRDADFLPLISEAKRKGKETVVIGVEPGFS 141
Query: 146 SALKHAADYVIVLKPRGE 163
AL++AADY+I ++ + E
Sbjct: 142 VALQNAADYIIKMEKKKE 159
>gi|11498667 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483083|pir||F69382 conserved hypothetical protein
AF1062 - Archaeoglobus fulgidus
>gi|2649525|gb|AAB90177.1| (AE001029) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 177
Score = 171 bits (429), Expect = 5e-42
Identities = 79/161 (49%), Positives = 121/161 (75%), Gaps = 5/161 (3%)
Query: 16 FIKSKIISRGKRIALLVDGPNILRKELGVHLEDIVEALSDLGNIRVAKVILNQYAPQSLI 75
++ + +S+ +++ +LVDGPN+LRKE ++L++I E LS+ G+I++AKV LNQYA + L+
Sbjct: 16 YLSKRKLSQRRKVGVLVDGPNMLRKEFNINLKEIREILSEYGDIKIAKVFLNQYATEKLV 75
Query: 76 EAVSNQGFEPVIVAGEIGVKLAVEAMREVYNPNIDIIALATRNTEFVPIILKAKEKGKET 135
EA+ NQGFEP++ +G++ V++AVEAM +YN +ID +AL TR+ +F +++KA E GKET
Sbjct: 76 EAIENQGFEPIVTSGDVDVRMAVEAMELIYNDSIDAVALVTRDADFKAVLMKAMEMGKET 135
Query: 136 AIIGVEPGFSSALKHAADYVIVL-----KPRGEVSEEGNLE 171
IIG EPGFS+ALK++AD IVL K +G+ EE +E
Sbjct: 136 IIIGAEPGFSTALKNSADIAIVLNEDEEKEKGDADEEEIIE 176
>pir||E69122 conserved hypothetical protein MTH1913 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2623047|gb|AAB86373.1| (AE000942) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 173
Score = 171 bits (428), Expect = 6e-42
Identities = 81/135 (60%), Positives = 108/135 (80%)
Query: 26 KRIALLVDGPNILRKELGVHLEDIVEALSDLGNIRVAKVILNQYAPQSLIEAVSNQGFEP 85
K I LLVDGPN+LRKE ++L+ + + +S+ GN+RV KV+LNQYA LIEA+ NQGF P
Sbjct: 24 KNIGLLVDGPNMLRKEFSLNLDLVRQIMSEYGNMRVGKVLLNQYASDKLIEAIVNQGFTP 83
Query: 86 VIVAGEIGVKLAVEAMREVYNPNIDIIALATRNTEFVPIILKAKEKGKETAIIGVEPGFS 145
++VA + V +AVEAM +YNPNIDIIAL TR+ +F+PII KAKE GK+T +IG EPGFS
Sbjct: 84 IVVAWDTDVYMAVEAMELIYNPNIDIIALMTRDADFLPIINKAKENGKDTIVIGAEPGFS 143
Query: 146 SALKHAADYVIVLKP 160
+AL+++AD+ I+LKP
Sbjct: 144 AALQNSADHAIILKP 158
>sp|Q57905|Y482_METJA HYPOTHETICAL PROTEIN MJ0482 >gi|2128337|pir||A64360 hypothetical
protein MJ0482 - Methanococcus jannaschii
>gi|1591185|gb|AAB98473.1| (U67498) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 240
Score = 166 bits (417), Expect = 1e-40
Identities = 92/189 (48%), Positives = 126/189 (65%), Gaps = 9/189 (4%)
Query: 4 WEKIVEGVKSIAFIKSKIISRGKRIALLVDGPNILRKELGVHLEDIVEALSDLGNIRVAK 63
W+K+ E + S + K++ RIALL+DGPN+LRKE + L+ I E LS+ G+I + +
Sbjct: 49 WKKL-ESLTSKIYEKARKRKGEHRIALLIDGPNMLRKEFNIDLDKIREVLSEFGDIVIGR 107
Query: 64 VILNQYAPQSLIEAVSNQGFEPVIVAGEIGVKLAVEAMREVYNPNIDIIALATRNTEFVP 123
V LNQYA LIEAV NQGFEP I AG++ V++AV+A V+NPNID IA TR+ +F+P
Sbjct: 108 VYLNQYASDKLIEAVINQGFEPKISAGDVDVEMAVDATELVFNPNIDTIAYVTRDADFLP 167
Query: 124 IILKAKEKGKETAIIGVEPGFSSALKHAADYVIVLKPRGEVSEEGNL--EDLEKGERGGG 181
I KAKE+GK+ +IG EPGFS+AL++ ADYVI ++ EE L E LEK ++
Sbjct: 168 AIRKAKERGKKVIVIGAEPGFSTALQNIADYVI------KIGEEFQLDREKLEKKKKNKF 221
Query: 182 RKSENNRSD 190
K E + D
Sbjct: 222 LKVEEKQKD 230
>pir||C69008 conserved hypothetical protein MTH1064 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622162|gb|AAB85553.1| (AE000877) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 155
Score = 160 bits (400), Expect = 1e-38
Identities = 79/137 (57%), Positives = 102/137 (73%)
Query: 26 KRIALLVDGPNILRKELGVHLEDIVEALSDLGNIRVAKVILNQYAPQSLIEAVSNQGFEP 85
K + LLVDGPN+LRKE LE + L D GN++V KV+LNQYA LIEAV NQGF P
Sbjct: 18 KSLGLLVDGPNMLRKEFCSDLEFVKNLLFDRGNLKVGKVLLNQYASDKLIEAVVNQGFSP 77
Query: 86 VIVAGEIGVKLAVEAMREVYNPNIDIIALATRNTEFVPIILKAKEKGKETAIIGVEPGFS 145
+IVAG++ V+LAVEA ++NPNID++A+ TRN +F+P+I AKE GKET +IG EPGFS
Sbjct: 78 MIVAGDVDVQLAVEAFELIHNPNIDVVAIMTRNADFLPLINIAKENGKETLVIGAEPGFS 137
Query: 146 SALKHAADYVIVLKPRG 162
AL+++AD I+L G
Sbjct: 138 IALQNSADDSIILGSEG 154
>gb|AAG19872.1| (AE005071) Vng1608c [Halobacterium sp. NRC-1]
Length = 187
Score = 99.5 bits (244), Expect = 2e-20
Identities = 51/132 (38%), Positives = 87/132 (65%), Gaps = 1/132 (0%)
Query: 28 IALLVDGPNILRKELGVHLEDIVEALSDLGNIRVAKVILNQYAPQSLIEAVSNQGFEPVI 87
+AL VDGPN+LR E V L+D+ E ++G + V ++ L+++A LI+A +G++ +
Sbjct: 52 VALFVDGPNVLRDEFDVDLDDVREIAGEVGPLAVTRLYLDEHATPPLIQAGEARGYDVRV 111
Query: 88 VAGEIGVKLAVEAMREVYNPNIDIIALATRNTEFVPIILKAKEKGKET-AIIGVEPGFSS 146
+G++ VKLAV+A V + +D++A+A+R+T+F P+ +A+ +G T AI E G S
Sbjct: 112 TSGDVDVKLAVDATELVLDDGVDVLAVASRDTDFKPVFEQAERRGVRTLAIAPGEHGRSD 171
Query: 147 ALKHAADYVIVL 158
AL++AA +VL
Sbjct: 172 ALRNAATDAVVL 183
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.314 0.136 0.368
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66612918
Number of Sequences: 2977
Number of extensions: 2601548
Number of successful extensions: 5502
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5493
Number of HSP's gapped (non-prelim): 9
length of query: 191
length of database: 189,106,746
effective HSP length: 59
effective length of query: 132
effective length of database: 153,796,013
effective search space: 20301073716
effective search space used: 20301073716
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 162 (67.5 bits)