BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0043 (PAB0043) DE:Hypothetical protein
(162 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75194 hypothetical protein PAB0043 - Pyrococcus abyssi (st... 317 4e-86
pir||H71226 hypothetical protein PH0074 - Pyrococcus horikoshii ... 291 2e-78
pir||G71226 hypothetical protein PH0073 - Pyrococcus horikoshii ... 189 1e-47
pir||E75194 hypothetical protein PAB0042 - Pyrococcus abyssi (st... 187 6e-47
pir||E69122 conserved hypothetical protein MTH1913 - Methanobact... 182 2e-45
sp|Q57905|Y482_METJA HYPOTHETICAL PROTEIN MJ0482 >gi|2128337|pir... 175 2e-43
gi|11498667 conserved hypothetical protein [Archaeoglobus fulgid... 172 2e-42
pir||C69008 conserved hypothetical protein MTH1064 - Methanobact... 170 9e-42
gb|AAG19872.1| (AE005071) Vng1608c [Halobacterium sp. NRC-1] 111 6e-24
>pir||F75194 hypothetical protein PAB0043 - Pyrococcus abyssi (strain Orsay)
>gi|5457514|emb|CAB49005.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 162
Score = 317 bits (804), Expect = 4e-86
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MKRVISKIWRKEREEEEENPKTIGLIIDGPNILRKEFGIKLEDIKKALERIGKIRVAKVV 60
MKRVISKIWRKEREEEEENPKTIGLIIDGPNILRKEFGIKLEDIKKALERIGKIRVAKVV
Sbjct: 1 MKRVISKIWRKEREEEEENPKTIGLIIDGPNILRKEFGIKLEDIKKALERIGKIRVAKVV 60
Query: 61 LNQYAPQGLIEAVVNQGFEPIIVAGDTDVRMAIEAMELIYNADVDVIALATRDADFLPLI 120
LNQYAPQGLIEAVVNQGFEPIIVAGDTDVRMAIEAMELIYNADVDVIALATRDADFLPLI
Sbjct: 61 LNQYAPQGLIEAVVNQGFEPIIVAGDTDVRMAIEAMELIYNADVDVIALATRDADFLPLI 120
Query: 121 SEAKRKGKETVVIGVEPGFSVALQNAADYIIKMEKKKEGEGY 162
SEAKRKGKETVVIGVEPGFSVALQNAADYIIKMEKKKEGEGY
Sbjct: 121 SEAKRKGKETVVIGVEPGFSVALQNAADYIIKMEKKKEGEGY 162
>pir||H71226 hypothetical protein PH0074 - Pyrococcus horikoshii
>gi|3256460|dbj|BAA29143.1| (AP000001) 163aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 163
Score = 291 bits (738), Expect = 2e-78
Identities = 152/163 (93%), Positives = 157/163 (96%), Gaps = 1/163 (0%)
Query: 1 MKRVISKIWRKEREEEEE-NPKTIGLIIDGPNILRKEFGIKLEDIKKALERIGKIRVAKV 59
MKRVISKI +KE+E+EEE KTIGLIIDGPNILRKEFGIKLEDIKKALE+IGKIRVAKV
Sbjct: 1 MKRVISKILKKEKEKEEEVEEKTIGLIIDGPNILRKEFGIKLEDIKKALEKIGKIRVAKV 60
Query: 60 VLNQYAPQGLIEAVVNQGFEPIIVAGDTDVRMAIEAMELIYNADVDVIALATRDADFLPL 119
VLNQYAPQGLIEAVVNQGFEPIIVAGDTDVR+AIEAMELIYN DVDVIALATRDADFLPL
Sbjct: 61 VLNQYAPQGLIEAVVNQGFEPIIVAGDTDVRVAIEAMELIYNTDVDVIALATRDADFLPL 120
Query: 120 ISEAKRKGKETVVIGVEPGFSVALQNAADYIIKMEKKKEGEGY 162
ISEAKRKGKETVVIGVEPGFSVALQNAADYIIKMEKKKE EGY
Sbjct: 121 ISEAKRKGKETVVIGVEPGFSVALQNAADYIIKMEKKKEAEGY 163
>pir||G71226 hypothetical protein PH0073 - Pyrococcus horikoshii
>gi|3256459|dbj|BAA29142.1| (AP000001) 195aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 195
Score = 189 bits (476), Expect = 1e-47
Identities = 89/138 (64%), Positives = 115/138 (82%)
Query: 21 KTIGLIIDGPNILRKEFGIKLEDIKKALERIGKIRVAKVVLNQYAPQGLIEAVVNQGFEP 80
K I L++DGPNILRKE G+ LEDI +AL +G IRVAKV+LNQYAPQ LIEAV NQGFEP
Sbjct: 29 KRIALLVDGPNILRKELGVHLEDIVEALSSLGNIRVAKVILNQYAPQSLIEAVSNQGFEP 88
Query: 81 IIVAGDTDVRMAIEAMELIYNADVDVIALATRDADFLPLISEAKRKGKETVVIGVEPGFS 140
+IVAG+ V++A+EAM +YN ++D+IALATR+ +F+P+I +AK KGKET +IGVEPGFS
Sbjct: 89 VIVAGEIGVKLAVEAMREVYNPNIDIIALATRNTEFVPIILKAKEKGKETAIIGVEPGFS 148
Query: 141 VALQNAADYIIKMEKKKE 158
AL++AADY+I +E + E
Sbjct: 149 SALKHAADYVIVLESRGE 166
>pir||E75194 hypothetical protein PAB0042 - Pyrococcus abyssi (strain Orsay)
>gi|5457513|emb|CAB49004.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 191
Score = 187 bits (470), Expect = 6e-47
Identities = 88/138 (63%), Positives = 115/138 (82%)
Query: 21 KTIGLIIDGPNILRKEFGIKLEDIKKALERIGKIRVAKVVLNQYAPQGLIEAVVNQGFEP 80
K I L++DGPNILRKE G+ LEDI +AL +G IRVAKV+LNQYAPQ LIEAV NQGFEP
Sbjct: 26 KRIALLVDGPNILRKELGVHLEDIVEALSDLGNIRVAKVILNQYAPQSLIEAVSNQGFEP 85
Query: 81 IIVAGDTDVRMAIEAMELIYNADVDVIALATRDADFLPLISEAKRKGKETVVIGVEPGFS 140
+IVAG+ V++A+EAM +YN ++D+IALATR+ +F+P+I +AK KGKET +IGVEPGFS
Sbjct: 86 VIVAGEIGVKLAVEAMREVYNPNIDIIALATRNTEFVPIILKAKEKGKETAIIGVEPGFS 145
Query: 141 VALQNAADYIIKMEKKKE 158
AL++AADY+I ++ + E
Sbjct: 146 SALKHAADYVIVLKPRGE 163
>pir||E69122 conserved hypothetical protein MTH1913 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2623047|gb|AAB86373.1| (AE000942) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 173
Score = 182 bits (457), Expect = 2e-45
Identities = 85/138 (61%), Positives = 112/138 (80%)
Query: 14 EEEEENPKTIGLIIDGPNILRKEFGIKLEDIKKALERIGKIRVAKVVLNQYAPQGLIEAV 73
+++E K IGL++DGPN+LRKEF + L+ +++ + G +RV KV+LNQYA LIEA+
Sbjct: 17 KKKEGGEKNIGLLVDGPNMLRKEFSLNLDLVRQIMSEYGNMRVGKVLLNQYASDKLIEAI 76
Query: 74 VNQGFEPIIVAGDTDVRMAIEAMELIYNADVDVIALATRDADFLPLISEAKRKGKETVVI 133
VNQGF PI+VA DTDV MA+EAMELIYN ++D+IAL TRDADFLP+I++AK GK+T+VI
Sbjct: 77 VNQGFTPIVVAWDTDVYMAVEAMELIYNPNIDIIALMTRDADFLPIINKAKENGKDTIVI 136
Query: 134 GVEPGFSVALQNAADYII 151
G EPGFS ALQN+AD+ I
Sbjct: 137 GAEPGFSAALQNSADHAI 154
>sp|Q57905|Y482_METJA HYPOTHETICAL PROTEIN MJ0482 >gi|2128337|pir||A64360 hypothetical
protein MJ0482 - Methanococcus jannaschii
>gi|1591185|gb|AAB98473.1| (U67498) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 240
Score = 175 bits (440), Expect = 2e-43
Identities = 90/171 (52%), Positives = 119/171 (68%), Gaps = 13/171 (7%)
Query: 1 MKRVISKIWRKEREEEEENPKTIGLIIDGPNILRKEFGIKLEDIKKALERIGKIRVAKVV 60
++ + SKI+ K R+ + E+ I L+IDGPN+LRKEF I L+ I++ L G I + +V
Sbjct: 52 LESLTSKIYEKARKRKGEH--RIALLIDGPNMLRKEFNIDLDKIREVLSEFGDIVIGRVY 109
Query: 61 LNQYAPQGLIEAVVNQGFEPIIVAGDTDVRMAIEAMELIYNADVDVIALATRDADFLPLI 120
LNQYA LIEAV+NQGFEP I AGD DV MA++A EL++N ++D IA TRDADFLP I
Sbjct: 110 LNQYASDKLIEAVINQGFEPKISAGDVDVEMAVDATELVFNPNIDTIAYVTRDADFLPAI 169
Query: 121 SEAKRKGKETVVIGVEPGFSVALQNAADYII-----------KMEKKKEGE 160
+AK +GK+ +VIG EPGFS ALQN ADY+I K+EKKK+ +
Sbjct: 170 RKAKERGKKVIVIGAEPGFSTALQNIADYVIKIGEEFQLDREKLEKKKKNK 220
>gi|11498667 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483083|pir||F69382 conserved hypothetical protein
AF1062 - Archaeoglobus fulgidus
>gi|2649525|gb|AAB90177.1| (AE001029) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 177
Score = 172 bits (431), Expect = 2e-42
Identities = 78/140 (55%), Positives = 108/140 (76%)
Query: 21 KTIGLIIDGPNILRKEFGIKLEDIKKALERIGKIRVAKVVLNQYAPQGLIEAVVNQGFEP 80
+ +G+++DGPN+LRKEF I L++I++ L G I++AKV LNQYA + L+EA+ NQGFEP
Sbjct: 26 RKVGVLVDGPNMLRKEFNINLKEIREILSEYGDIKIAKVFLNQYATEKLVEAIENQGFEP 85
Query: 81 IIVAGDTDVRMAIEAMELIYNADVDVIALATRDADFLPLISEAKRKGKETVVIGVEPGFS 140
I+ +GD DVRMA+EAMELIYN +D +AL TRDADF ++ +A GKET++IG EPGFS
Sbjct: 86 IVTSGDVDVRMAVEAMELIYNDSIDAVALVTRDADFKAVLMKAMEMGKETIIIGAEPGFS 145
Query: 141 VALQNAADYIIKMEKKKEGE 160
AL+N+AD I + + +E E
Sbjct: 146 TALKNSADIAIVLNEDEEKE 165
>pir||C69008 conserved hypothetical protein MTH1064 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622162|gb|AAB85553.1| (AE000877) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 155
Score = 170 bits (426), Expect = 9e-42
Identities = 82/131 (62%), Positives = 107/131 (81%)
Query: 18 ENPKTIGLIIDGPNILRKEFGIKLEDIKKALERIGKIRVAKVVLNQYAPQGLIEAVVNQG 77
++ K++GL++DGPN+LRKEF LE +K L G ++V KV+LNQYA LIEAVVNQG
Sbjct: 15 KDKKSLGLLVDGPNMLRKEFCSDLEFVKNLLFDRGNLKVGKVLLNQYASDKLIEAVVNQG 74
Query: 78 FEPIIVAGDTDVRMAIEAMELIYNADVDVIALATRDADFLPLISEAKRKGKETVVIGVEP 137
F P+IVAGD DV++A+EA ELI+N ++DV+A+ TR+ADFLPLI+ AK GKET+VIG EP
Sbjct: 75 FSPMIVAGDVDVQLAVEAFELIHNPNIDVVAIMTRNADFLPLINIAKENGKETLVIGAEP 134
Query: 138 GFSVALQNAAD 148
GFS+ALQN+AD
Sbjct: 135 GFSIALQNSAD 145
>gb|AAG19872.1| (AE005071) Vng1608c [Halobacterium sp. NRC-1]
Length = 187
Score = 111 bits (274), Expect = 6e-24
Identities = 53/138 (38%), Positives = 91/138 (65%), Gaps = 1/138 (0%)
Query: 11 KEREEEEENPKTIGLIIDGPNILRKEFGIKLEDIKKALERIGKIRVAKVVLNQYAPQGLI 70
+E + E P + L +DGPN+LR EF + L+D+++ +G + V ++ L+++A LI
Sbjct: 40 RELRADRETPGGVALFVDGPNVLRDEFDVDLDDVREIAGEVGPLAVTRLYLDEHATPPLI 99
Query: 71 EAVVNQGFEPIIVAGDTDVRMAIEAMELIYNADVDVIALATRDADFLPLISEAKRKGKET 130
+A +G++ + +GD DV++A++A EL+ + VDV+A+A+RD DF P+ +A+R+G T
Sbjct: 100 QAGEARGYDVRVTSGDVDVKLAVDATELVLDDGVDVLAVASRDTDFKPVFEQAERRGVRT 159
Query: 131 VVIGV-EPGFSVALQNAA 147
+ I E G S AL+NAA
Sbjct: 160 LAIAPGEHGRSDALRNAA 177
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.138 0.375
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57030777
Number of Sequences: 2977
Number of extensions: 2181169
Number of successful extensions: 7281
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7271
Number of HSP's gapped (non-prelim): 9
length of query: 162
length of database: 189,106,746
effective HSP length: 57
effective length of query: 105
effective length of database: 154,992,987
effective search space: 16274263635
effective search space used: 16274263635
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 162 (67.5 bits)