BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0044 (PAB0044) DE:Hypothetical protein
(280 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75194 hypothetical protein PAB0044 - Pyrococcus abyssi (st... 548 e-155
pir||B71227 hypothetical protein PH0076 - Pyrococcus horikoshii ... 383 e-105
pir||H75020 hypothetical protein PAB1116 - Pyrococcus abyssi (st... 78 1e-13
pir||G71207 hypothetical protein PH1927 - Pyrococcus horikoshii ... 73 5e-12
pir||G75029 hypothetical protein PAB1160 - Pyrococcus abyssi (st... 73 5e-12
>pir||H75194 hypothetical protein PAB0044 - Pyrococcus abyssi (strain Orsay)
>gi|5457516|emb|CAB49007.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 280
Score = 548 bits (1396), Expect = e-155
Identities = 280/280 (100%), Positives = 280/280 (100%)
Query: 1 MEVISPVYFIRDIIVLIVSLTAVIIIVVLRNKAKEAMKYWPFAMASISALVSFTLISIAQ 60
MEVISPVYFIRDIIVLIVSLTAVIIIVVLRNKAKEAMKYWPFAMASISALVSFTLISIAQ
Sbjct: 1 MEVISPVYFIRDIIVLIVSLTAVIIIVVLRNKAKEAMKYWPFAMASISALVSFTLISIAQ 60
Query: 61 IIGALLNTSVLYDKYEPWQLIRSVLLIIAAILLLVSVLSFYIPFGRGKYVIFRIRTEEKF 120
IIGALLNTSVLYDKYEPWQLIRSVLLIIAAILLLVSVLSFYIPFGRGKYVIFRIRTEEKF
Sbjct: 61 IIGALLNTSVLYDKYEPWQLIRSVLLIIAAILLLVSVLSFYIPFGRGKYVIFRIRTEEKF 120
Query: 121 RELWGAYWCYRDQCYAAFKALLNARFPGIAITRDPPEVFRGKLNLHLTPVIWISKVKHEE 180
RELWGAYWCYRDQCYAAFKALLNARFPGIAITRDPPEVFRGKLNLHLTPVIWISKVKHEE
Sbjct: 121 RELWGAYWCYRDQCYAAFKALLNARFPGIAITRDPPEVFRGKLNLHLTPVIWISKVKHEE 180
Query: 181 AVSPTRLEFLTQRIADFLRSAEIDKVILIDCLDYLILENGENAVIKFVTRLKDLAMLHRG 240
AVSPTRLEFLTQRIADFLRSAEIDKVILIDCLDYLILENGENAVIKFVTRLKDLAMLHRG
Sbjct: 181 AVSPTRLEFLTQRIADFLRSAEIDKVILIDCLDYLILENGENAVIKFVTRLKDLAMLHRG 240
Query: 241 IILVTIDESVLSEKVVSFLKRELEPISNLNLTKVSPEIEV 280
IILVTIDESVLSEKVVSFLKRELEPISNLNLTKVSPEIEV
Sbjct: 241 IILVTIDESVLSEKVVSFLKRELEPISNLNLTKVSPEIEV 280
>pir||B71227 hypothetical protein PH0076 - Pyrococcus horikoshii
>gi|3256462|dbj|BAA29145.1| (AP000001) 282aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 282
Score = 383 bits (974), Expect = e-105
Identities = 179/274 (65%), Positives = 227/274 (82%)
Query: 1 MEVISPVYFIRDIIVLIVSLTAVIIIVVLRNKAKEAMKYWPFAMASISALVSFTLISIAQ 60
M +I+ YF RD++V I++ +A III+ LR A+EAMKY PF+MASI L+SF LIS+A+
Sbjct: 1 MRIINLTYFFRDLLVFIITTSATIIIIALRKNAREAMKYKPFSMASIFGLLSFLLISLAE 60
Query: 61 IIGALLNTSVLYDKYEPWQLIRSVLLIIAAILLLVSVLSFYIPFGRGKYVIFRIRTEEKF 120
+IG L+NT+VL ++YE WQ RS++ +AA LL SVLSFY+PFG+ +YVIF++ +E K
Sbjct: 61 LIGMLINTAVLINQYETWQFFRSIIFTMAAFFLLASVLSFYVPFGKKRYVIFKVVSEAKL 120
Query: 121 RELWGAYWCYRDQCYAAFKALLNARFPGIAITRDPPEVFRGKLNLHLTPVIWISKVKHEE 180
+LWGAY+C R+ CYA FKALLNAR PGIAI RDPPE+FR KL LHLTPVIWISK+KHE+
Sbjct: 121 SKLWGAYYCDRNSCYAVFKALLNARLPGIAIARDPPEIFREKLGLHLTPVIWISKIKHED 180
Query: 181 AVSPTRLEFLTQRIADFLRSAEIDKVILIDCLDYLILENGENAVIKFVTRLKDLAMLHRG 240
AVSPTRLEFL QR+ADFL+S +IDKVILIDCLDYLILENGE AV KF+T+LKDL++LHRG
Sbjct: 181 AVSPTRLEFLIQRLADFLKSVDIDKVILIDCLDYLILENGEKAVSKFITKLKDLSILHRG 240
Query: 241 IILVTIDESVLSEKVVSFLKRELEPISNLNLTKV 274
I LVT+DE VL + ++ FLK ELEP+SNLN+ ++
Sbjct: 241 ITLVTLDEEVLPDNMIHFLKSELEPVSNLNINEI 274
>pir||H75020 hypothetical protein PAB1116 - Pyrococcus abyssi (strain Orsay)
>gi|5459120|emb|CAB50606.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 353
Score = 78.0 bits (189), Expect = 1e-13
Identities = 66/243 (27%), Positives = 110/243 (45%), Gaps = 33/243 (13%)
Query: 36 AMKYWPFAMASISALVSFTLISIAQIIGALLNTSVLYDKYEPWQLIRSVLLIIAAILLLV 95
+M Y F + S S TL I I LLN + + + ++ ++ + L
Sbjct: 132 SMVYLGFVLISHSRGTIETLFPIGTIGVGLLNLT--------YPITSNIPILSTSFFTLA 183
Query: 96 SVLSFYIPFGRGKYVIFRIRTEEKFRELWG----AYWCYRDQCYAAFKALLNARFPGIAI 151
++ F G K +I K + G AYW + L++ P I
Sbjct: 184 AIFRFMAAIGAIKMIILIPEEPRKSKRTKGLQPGAYWT---ESKKGALELISQSNPVIIT 240
Query: 152 TRDPPEVFRGKLNLHLTPVI-WISKVKHEE------AVSPTRLEFLTQRIADFLRSAEID 204
R+P L+++ I WI+K K + A+SPT+++ L I R+ E+
Sbjct: 241 RRNP-------LDINFPAAIYWITKAKEGKIRENVYAISPTKIDILIDLIN---RAFEMG 290
Query: 205 -KVILIDCLDYLILENGENAVIKFVTRLKDLAMLHRGIILVTIDESVLSEKVVSFLKREL 263
K + IDCL+YL LENG NA +KF+ +KD+ H G+IL+ ++ E+ V +++E
Sbjct: 291 YKTLYIDCLEYLALENGTNATLKFLYTIKDIITKHNGVILLALNPKTFEEREVKMIEKEF 350
Query: 264 EPI 266
+ I
Sbjct: 351 KKI 353
>pir||G71207 hypothetical protein PH1927 - Pyrococcus horikoshii
>gi|3258371|dbj|BAA31054.1| (AP000007) 355aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 355
Score = 72.6 bits (175), Expect = 5e-12
Identities = 55/196 (28%), Positives = 98/196 (49%), Gaps = 29/196 (14%)
Query: 81 IRSVLLIIAAILLLVSVLSFYIPFGRGKYVIFRIRTEEKFRELW--GAYWCYRDQCYAAF 138
I +L ++AAI L++ + G K V F + + + + GAYW ++
Sbjct: 179 ISDMLFLVAAIFRLIAAI------GAIKMVTFVPKAPKNIKVISKPGAYWTENEEKGLNL 232
Query: 139 KALLNARFPGIAITRDPPEVFRGKLNLHLTPVI-WISKVKHEE------AVSPTRLEFLT 191
+ +N + ITR + LN+ ++ WI+KVK E A+ PT + LT
Sbjct: 233 ISTMNP----VIITR------KRDLNIKTPAIVYWITKVKEGEIGENIYAILPTNIGILT 282
Query: 192 QRIADFLRSAEID-KVILIDCLDYLILENGENAVIKFVTRLKDLAMLHRGIILVTIDESV 250
I R+ ++ + IDC++YLILENG A +KF+ KD+ + ++G I++ I+
Sbjct: 283 DLI---YRAFKVGYNAVYIDCIEYLILENGTKATLKFLYNAKDIVLSNKGTIVLVINPKA 339
Query: 251 LSEKVVSFLKRELEPI 266
L E+ + +++E + I
Sbjct: 340 LGEQELKIIEKEFQKI 355
>pir||G75029 hypothetical protein PAB1160 - Pyrococcus abyssi (strain Orsay)
>gi|5459191|emb|CAB50677.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 242
Score = 72.6 bits (175), Expect = 5e-12
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 149 IAITRDPPEVFRGKLNLHLTPVIWISKVKHEEAVSPTRLEFLTQRIADFLRSAEIDKVIL 208
+AITRDP + +IW++ E V PT L L F VI+
Sbjct: 128 LAITRDPDRFLN-----KASRIIWVTS-SGENGVPPTSLHVLLDLSIRFANENR-GGVII 180
Query: 209 IDCLDYLILENGENAVIKFVTRLKDLAMLHRGIILVTIDESVLSEKVVSFLKRELEPI 266
+DCL++LIL NG N+V KF+T LKD + GI+++ + L E+ ++ LKRE PI
Sbjct: 181 LDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMNMLKREFRPI 238
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.143 0.415
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89876337
Number of Sequences: 2977
Number of extensions: 3381199
Number of successful extensions: 13242
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13240
Number of HSP's gapped (non-prelim): 5
length of query: 280
length of database: 189,106,746
effective HSP length: 53
effective length of query: 227
effective length of database: 157,386,935
effective search space: 35726834245
effective search space used: 35726834245
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 164 (68.3 bits)