BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0045 (PAB0045) DE:D-AMINOPEPTIDASE.
(361 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75195 d-aminopeptidase. PAB0045 - Pyrococcus abyssi (strai... 719 0.0
pir||D71227 probable D-aminopeptidase - Pyrococcus horikoshii >g... 658 0.0
pir||G83460 hypothetical protein PA1486 [imported] - Pseudomonas... 246 3e-64
pdb|1B65|A Chain A, Structure Of L-Aminopeptidase D-Ala-Esterase... 224 2e-57
>pir||A75195 d-aminopeptidase. PAB0045 - Pyrococcus abyssi (strain Orsay)
>gi|5457517|emb|CAB49008.1| (AJ248283) D-AMINOPEPTIDASE.
[Pyrococcus abyssi]
Length = 361
Score = 719 bits (1835), Expect = 0.0
Identities = 361/361 (100%), Positives = 361/361 (100%)
Query: 1 MKAQDLGIKIGVFECGKRNKISDVKGVKVGHVTLIRGKGKLIPGKGPVRTGVTVILPHEG 60
MKAQDLGIKIGVFECGKRNKISDVKGVKVGHVTLIRGKGKLIPGKGPVRTGVTVILPHEG
Sbjct: 1 MKAQDLGIKIGVFECGKRNKISDVKGVKVGHVTLIRGKGKLIPGKGPVRTGVTVILPHEG 60
Query: 61 NIYKEKVLGGAFVMNGYSKPVGLVQLWELGTIETPIVLTNTLSIGTAVDGLLDYVLSENE 120
NIYKEKVLGGAFVMNGYSKPVGLVQLWELGTIETPIVLTNTLSIGTAVDGLLDYVLSENE
Sbjct: 61 NIYKEKVLGGAFVMNGYSKPVGLVQLWELGTIETPIVLTNTLSIGTAVDGLLDYVLSENE 120
Query: 121 DIGVTTGSVNPLVLECNDSYLNDIRGRHVKREHVVEAIKNAKEDFEEGAVGSGTGMSAFE 180
DIGVTTGSVNPLVLECNDSYLNDIRGRHVKREHVVEAIKNAKEDFEEGAVGSGTGMSAFE
Sbjct: 121 DIGVTTGSVNPLVLECNDSYLNDIRGRHVKREHVVEAIKNAKEDFEEGAVGSGTGMSAFE 180
Query: 181 FKGGIGSSSRIVKIEGRSYTIGALVMTNFGKREDLTIAGVPVGLELKHWPGRGGDGKGSI 240
FKGGIGSSSRIVKIEGRSYTIGALVMTNFGKREDLTIAGVPVGLELKHWPGRGGDGKGSI
Sbjct: 181 FKGGIGSSSRIVKIEGRSYTIGALVMTNFGKREDLTIAGVPVGLELKHWPGRGGDGKGSI 240
Query: 241 IMIIATDAPLTSRQLNRLAKRAVVGLARTGGYAYNGSGDIAVAFSTANKIKHYEKDIMEI 300
IMIIATDAPLTSRQLNRLAKRAVVGLARTGGYAYNGSGDIAVAFSTANKIKHYEKDIMEI
Sbjct: 241 IMIIATDAPLTSRQLNRLAKRAVVGLARTGGYAYNGSGDIAVAFSTANKIKHYEKDIMEI 300
Query: 301 KALPDSLLSPLFKAAAEAVEEAIINSLLEAKTMDGRDNHIRYALPQDEVVRILKKYGRIE 360
KALPDSLLSPLFKAAAEAVEEAIINSLLEAKTMDGRDNHIRYALPQDEVVRILKKYGRIE
Sbjct: 301 KALPDSLLSPLFKAAAEAVEEAIINSLLEAKTMDGRDNHIRYALPQDEVVRILKKYGRIE 360
Query: 361 E 361
E
Sbjct: 361 E 361
>pir||D71227 probable D-aminopeptidase - Pyrococcus horikoshii
>gi|3256464|dbj|BAA29147.1| (AP000001) 361aa long
hypothetical D-aminopeptidase [Pyrococcus horikoshii]
Length = 361
Score = 658 bits (1680), Expect = 0.0
Identities = 316/361 (87%), Positives = 352/361 (96%)
Query: 1 MKAQDLGIKIGVFECGKRNKISDVKGVKVGHVTLIRGKGKLIPGKGPVRTGVTVILPHEG 60
MKAQ+LGIKIGVF+ GKRNKI+DVKGVKVGHVTLI+GKGKLIPGKGPVRTGVT ILPHEG
Sbjct: 1 MKAQELGIKIGVFKPGKRNKITDVKGVKVGHVTLIKGKGKLIPGKGPVRTGVTAILPHEG 60
Query: 61 NIYKEKVLGGAFVMNGYSKPVGLVQLWELGTIETPIVLTNTLSIGTAVDGLLDYVLSENE 120
NIYKEKVL GAFVMNGYSKPVGL+QLWELGTIETPI+LTNTLSIGTAV+GLLDY+L ENE
Sbjct: 61 NIYKEKVLAGAFVMNGYSKPVGLIQLWELGTIETPIILTNTLSIGTAVEGLLDYILEENE 120
Query: 121 DIGVTTGSVNPLVLECNDSYLNDIRGRHVKREHVVEAIKNAKEDFEEGAVGSGTGMSAFE 180
DIGVTTGSVNPLVLECNDSYLNDIRGRHVKREHVVEAIK A EDFEEGAVG+GTGMSAFE
Sbjct: 121 DIGVTTGSVNPLVLECNDSYLNDIRGRHVKREHVVEAIKRADEDFEEGAVGAGTGMSAFE 180
Query: 181 FKGGIGSSSRIVKIEGRSYTIGALVMTNFGKREDLTIAGVPVGLELKHWPGRGGDGKGSI 240
FKGGIGS+SRIV+IEG+ YT+GALV++NFG+REDLTIAGVPVGLELK+WPGRGG+GKGSI
Sbjct: 181 FKGGIGSASRIVEIEGKKYTVGALVLSNFGRREDLTIAGVPVGLELKNWPGRGGEGKGSI 240
Query: 241 IMIIATDAPLTSRQLNRLAKRAVVGLARTGGYAYNGSGDIAVAFSTANKIKHYEKDIMEI 300
IMIIATDAPLT RQLNR+AKRA+VGLARTGGYAYNGSGDIAVAFSTAN+IKHYEK+++EI
Sbjct: 241 IMIIATDAPLTGRQLNRVAKRAIVGLARTGGYAYNGSGDIAVAFSTANRIKHYEKEVIEI 300
Query: 301 KALPDSLLSPLFKAAAEAVEEAIINSLLEAKTMDGRDNHIRYALPQDEVVRILKKYGRIE 360
KALPDS++SPLFKA AEAVEEAIINSLLEA+TMDGRDNH+RYALP++E++RI+++YGR+E
Sbjct: 301 KALPDSVISPLFKATAEAVEEAIINSLLEARTMDGRDNHVRYALPKEELLRIMRRYGRLE 360
Query: 361 E 361
E
Sbjct: 361 E 361
>pir||G83460 hypothetical protein PA1486 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947440|gb|AAG04875.1|AE004577_10
(AE004577) hypothetical protein [Pseudomonas aeruginosa]
Length = 366
Score = 246 bits (621), Expect = 3e-64
Identities = 155/369 (42%), Positives = 213/369 (57%), Gaps = 19/369 (5%)
Query: 1 MKAQDLGIKIGVFECGKRNKISDVKGVKVGHVTLIRGKGKLIPGKGPVRTGVTVILPHEG 60
M+A+ LGI +G+ G N I+DV GV+VGH TL + I G+ VRTGVT++ P G
Sbjct: 1 MRARQLGITLGLGTPGPFNAITDVPGVRVGHSTL----NQRIDGR-QVRTGVTLVQPRAG 55
Query: 61 NIYKEKVLGGAFVMNGYSKPVGLVQLWELGTIETPIVLTNTLSIGTAVDGLLDYVLSENE 120
+ G V+NG GL + E G + TPI +TNT S+G D L+ +E
Sbjct: 56 AARLQPCFAGCHVLNGNGDATGLEWIREAGLLTTPIAITNTHSVGAVRDALIAEERAELG 115
Query: 121 DIGVTTGSVNPLVLECNDSYLNDIRGRHVKREHVVEAIKNAKED-FEEGAVGSGTGMSAF 179
D G+ P+V+E D LNDI G+HV V EA+ A+ EG+VG GTGM
Sbjct: 116 DSGLYW--CMPVVMETFDGLLNDIWGQHVGARQVGEALACAESGPVREGSVGGGTGMICH 173
Query: 180 EFKGGIGSSSRIVKIEGRSYTIGALVMTNFGKREDLTIAGVPVGLELKHWPG----RGGD 235
EFKGGIGS+SR + E +T+GALV N G+R +L + G PVG L P G
Sbjct: 174 EFKGGIGSASRRLPAEQGGWTVGALVQANHGQRRELRVDGYPVGRRLGDIPSPFSEEGTP 233
Query: 236 GKGSIIMIIATDAPLTSRQLNRLAKRAVVGLARTGGYAYNGSGDIAVAFSTANK----IK 291
G GSI++I+ATDAPL Q RLA+RA +G+ARTGG + SGD+ +AF+T N+
Sbjct: 234 GMGSIVVILATDAPLLPHQCQRLAQRASIGIARTGGGTEDSSGDVFLAFATGNQDLPPAD 293
Query: 292 HYEKDIME---IKALPDSLLSPLFKAAAEAVEEAIINSLLEAKTMDGRDNHIRYALPQDE 348
+ KD+ + ++ L + +SPLF AAAEAVEEAI+N LL + M D + AL +
Sbjct: 294 YARKDLPQSTPLRMLNNDHISPLFAAAAEAVEEAIVNVLLAGEDMRTEDGRLVPALKGER 353
Query: 349 VVRILKKYG 357
++ L++ G
Sbjct: 354 LLAALRETG 362
>pdb|1B65|A Chain A, Structure Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold >gi|5821801|pdb|1B65|B Chain B, Structure
Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold >gi|5821802|pdb|1B65|C Chain C, Structure
Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold >gi|5821803|pdb|1B65|D Chain D, Structure
Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold >gi|5821804|pdb|1B65|E Chain E, Structure
Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold >gi|5821805|pdb|1B65|F Chain F, Structure
Of L-Aminopeptidase D-Ala-EsteraseAMIDASE FROM
Ochrobactrum Anthropi, A Prototype For The Serine
Aminopeptidases, Reveals A New Variant Among The Ntn
Hydrolase Fold >gi|1310704|emb|CAA66259.1| (X97669)
D-aminopeptidase [Ochrobactrum anthropi]
Length = 375
Score = 224 bits (564), Expect = 2e-57
Identities = 144/368 (39%), Positives = 211/368 (57%), Gaps = 14/368 (3%)
Query: 2 KAQDLGIKI-GVFECGKRNKISDVKGVKVGHVTLIRGKGKLIPG-KGPVRTGVTVILPHE 59
+A+DLG+ GV G N I+DV GV VG T+I + + PG K P R+GVT ILPH
Sbjct: 11 RARDLGLPFTGV--TGPYNAITDVDGVGVGFQTIIENEPR--PGRKRPARSGVTAILPHM 66
Query: 60 GNIYKEKVLGGAFVMNGYSKPVGLVQLWELGTIETPIVLTNTLSIGTAVDGLLDYVLSEN 119
+ V G NG + G + + G P+V+TNT IG A + +++
Sbjct: 67 QSETPVPVYAGVHRFNGNGEMTGTHWIEDGGYFLGPVVITNTHGIGMAHHATVRWMVDRY 126
Query: 120 EDIGVTTGS--VNPLVLECNDSYLNDIRGRHVKREHVVEAIKN-AKEDFEEGAVGSGTGM 176
T + P+V E D LNDI G V V +A+ N A +EG G GTGM
Sbjct: 127 ASTYQTDDFLWIMPVVAETYDGALNDINGFPVTEADVRKALDNVASGPVQEGNCGGGTGM 186
Query: 177 SAFEFKGGIGSSSRIVKIEGRSYTIGALVMTNFGKREDLTIAGVPVGLELKH-WPGRGGD 235
+ FKGG G++SR+V+ GRS+TIGALV N G+R+ LTIAGVPVG ++ P
Sbjct: 187 ITYGFKGGTGTASRVVEFGGRSFTIGALVQANHGQRDWLTIAGVPVGQHMRDGTPQSQLQ 246
Query: 236 GKGSIIMIIATDAPLTSRQLNRLAKRAVVGLARTGGYAYNGSGDIAVAFSTANK--IKHY 293
+GSII+++ATD PL QL RLA+RA +G+ R G N SGDI +AFSTAN+ ++H
Sbjct: 247 ERGSIIVVLATDLPLMPHQLKRLARRASIGIGRNGTPGGNNSGDIFIAFSTANQRPMQHR 306
Query: 294 EKDIMEIKALPDSLLSPLFKAAAEAVEEAIINSLLEAKTMDGR--DNHIRYALPQDEVVR 351
++++ + D L ++ AA ++VEEA++N+++ A+ M G D + A+ + +
Sbjct: 307 SAPFLDVEMVNDEPLDTVYLAAVDSVEEAVVNAMIAAEDMGGTPFDRLLVQAIDHERLRA 366
Query: 352 ILKKYGRI 359
+L++YGR+
Sbjct: 367 VLRQYGRL 374
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.138 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135203593
Number of Sequences: 2977
Number of extensions: 6038554
Number of successful extensions: 13187
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13173
Number of HSP's gapped (non-prelim): 4
length of query: 361
length of database: 189,106,746
effective HSP length: 57
effective length of query: 304
effective length of database: 154,992,987
effective search space: 47117868048
effective search space used: 47117868048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 165 (68.7 bits)