BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0046 (PAB0046) DE:Hypothetical protein
(355 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75195 hypothetical protein PAB0046 - Pyrococcus abyssi (st... 714 0.0
pir||F71227 hypothetical protein PH0080 - Pyrococcus horikoshii ... 670 0.0
sp|Q57864|Y421_METJA HYPOTHETICAL PROTEIN MJ0421 >gi|2128312|pir... 434 e-120
gi|11499808 conserved hypothetical protein [Archaeoglobus fulgid... 375 e-103
pir||G72585 hypothetical protein APE1156 - Aeropyrum pernix (str... 242 4e-63
>pir||B75195 hypothetical protein PAB0046 - Pyrococcus abyssi (strain Orsay)
>gi|5457518|emb|CAB49009.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 355
Score = 714 bits (1822), Expect = 0.0
Identities = 355/355 (100%), Positives = 355/355 (100%)
Query: 1 MKFIVKTQMDMEAVAGNYIKEVLPEAKVTIAPGGYPGLIIVESEDEKAMEKILEVPEVEK 60
MKFIVKTQMDMEAVAGNYIKEVLPEAKVTIAPGGYPGLIIVESEDEKAMEKILEVPEVEK
Sbjct: 1 MKFIVKTQMDMEAVAGNYIKEVLPEAKVTIAPGGYPGLIIVESEDEKAMEKILEVPEVEK 60
Query: 61 VFPVLIEVPATLDDIKNAAEEIVKHIKEGETFAVRTKKRGKKDYSSVDVNVVLGARIKDL 120
VFPVLIEVPATLDDIKNAAEEIVKHIKEGETFAVRTKKRGKKDYSSVDVNVVLGARIKDL
Sbjct: 61 VFPVLIEVPATLDDIKNAAEEIVKHIKEGETFAVRTKKRGKKDYSSVDVNVVLGARIKDL 120
Query: 121 TNAEVNLSYPDKVVQVEIIGDKAYISVIPGEEYMKWKKYPKEKPNCRKLFKKLTIVQMPY 180
TNAEVNLSYPDKVVQVEIIGDKAYISVIPGEEYMKWKKYPKEKPNCRKLFKKLTIVQMPY
Sbjct: 121 TNAEVNLSYPDKVVQVEIIGDKAYISVIPGEEYMKWKKYPKEKPNCRKLFKKLTIVQMPY 180
Query: 181 WGDYKTARAFGEKIGRAAQAFEVKELIIAPKEKMNAYELMAFLRGVKEGQESRYQIQKEA 240
WGDYKTARAFGEKIGRAAQAFEVKELIIAPKEKMNAYELMAFLRGVKEGQESRYQIQKEA
Sbjct: 181 WGDYKTARAFGEKIGRAAQAFEVKELIIAPKEKMNAYELMAFLRGVKEGQESRYQIQKEA 240
Query: 241 YPWEVEKVPVTVWDLYQVIRDKRRNRRLIIITDPKGPTLNEVKEKLAKDMYYAKEIVIFI 300
YPWEVEKVPVTVWDLYQVIRDKRRNRRLIIITDPKGPTLNEVKEKLAKDMYYAKEIVIFI
Sbjct: 241 YPWEVEKVPVTVWDLYQVIRDKRRNRRLIIITDPKGPTLNEVKEKLAKDMYYAKEIVIFI 300
Query: 301 GSREGIPVGLFRFADYVIDLAPYMTFATEHGIPATLVALWTIYEEELRKRGEISD 355
GSREGIPVGLFRFADYVIDLAPYMTFATEHGIPATLVALWTIYEEELRKRGEISD
Sbjct: 301 GSREGIPVGLFRFADYVIDLAPYMTFATEHGIPATLVALWTIYEEELRKRGEISD 355
>pir||F71227 hypothetical protein PH0080 - Pyrococcus horikoshii
>gi|3256466|dbj|BAA29149.1| (AP000001) 355aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 355
Score = 670 bits (1711), Expect = 0.0
Identities = 324/355 (91%), Positives = 349/355 (98%)
Query: 1 MKFIVKTQMDMEAVAGNYIKEVLPEAKVTIAPGGYPGLIIVESEDEKAMEKILEVPEVEK 60
MKFIVKTQMDMEAVAGNYI+EVLP AKVTIAP GYPG++IVESE+E A++KILEVPEVEK
Sbjct: 1 MKFIVKTQMDMEAVAGNYIREVLPNAKVTIAPEGYPGIVIVESEEENALQKILEVPEVEK 60
Query: 61 VFPVLIEVPATLDDIKNAAEEIVKHIKEGETFAVRTKKRGKKDYSSVDVNVVLGARIKDL 120
V+PVLIEVPA LD IK+AA+EIVK+IKEGETFAVRTKKRGK+D+SSVDVNVVLGARIKDL
Sbjct: 61 VYPVLIEVPANLDSIKSAADEIVKYIKEGETFAVRTKKRGKRDFSSVDVNVVLGARIKDL 120
Query: 121 TNAEVNLSYPDKVVQVEIIGDKAYISVIPGEEYMKWKKYPKEKPNCRKLFKKLTIVQMPY 180
TNAEVNLSYPDKVVQVEIIG+KAYISVIPG+EY KWKKYPK+KP+CRKLF+KLTIVQMPY
Sbjct: 121 TNAEVNLSYPDKVVQVEIIGEKAYISVIPGKEYTKWKKYPKDKPDCRKLFRKLTIVQMPY 180
Query: 181 WGDYKTARAFGEKIGRAAQAFEVKELIIAPKEKMNAYELMAFLRGVKEGQESRYQIQKEA 240
WGDYKTARAFGEKIGRAAQAFEVKELIIAPKEKMNAYELMAF+RGVKEGQESRYQIQKEA
Sbjct: 181 WGDYKTARAFGEKIGRAAQAFEVKELIIAPKEKMNAYELMAFIRGVKEGQESRYQIQKEA 240
Query: 241 YPWEVEKVPVTVWDLYQVIRDKRRNRRLIIITDPKGPTLNEVKEKLAKDMYYAKEIVIFI 300
YPWEVEKVPVTVWDLYQVIRDKRRNRRLIIITDPKGPTLNEVK+KLA+DMYYAKEI+IFI
Sbjct: 241 YPWEVEKVPVTVWDLYQVIRDKRRNRRLIIITDPKGPTLNEVKDKLARDMYYAKEIIIFI 300
Query: 301 GSREGIPVGLFRFADYVIDLAPYMTFATEHGIPATLVALWTIYEEELRKRGEISD 355
GSREGIP+GLFRFADYV+DLAPYMTFATEHGIPATLVALWTIYEEELR+RGEI+D
Sbjct: 301 GSREGIPIGLFRFADYVVDLAPYMTFATEHGIPATLVALWTIYEEELRRRGEIND 355
>sp|Q57864|Y421_METJA HYPOTHETICAL PROTEIN MJ0421 >gi|2128312|pir||E64352 hypothetical
protein MJ0421 - Methanococcus jannaschii
>gi|1591124|gb|AAB98409.1| (U67494) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 360
Score = 434 bits (1103), Expect = e-120
Identities = 213/346 (61%), Positives = 268/346 (76%), Gaps = 4/346 (1%)
Query: 1 MKFIVKTQMDMEAVAGNYIKEVLPEAKVTIAPGGYPGLIIVESEDEKAMEKILEVPEVEK 60
MKFI+KTQ E + N +KE++ + ++P GY G++IVES DE +KIL++PEVE+
Sbjct: 1 MKFIIKTQKGFENIVVNNLKEIVDDFNYIVSPDGYQGIVIVES-DEDIEDKILQIPEVER 59
Query: 61 VFPVLIEVPATLDDIKNAAEEIVKHIKEGETFAVRTKKRGKKDYSSVDVNVVLGARIKDL 120
V V E D I N AE+I +IKE ETFAV TKKRGK D+SS D+N+VLGA+IKDL
Sbjct: 60 VLKVYFETETDFDKIVNLAEKIKDYIKEDETFAVETKKRGKHDFSSTDINIVLGAKIKDL 119
Query: 121 TNAEVNLSYPDKVVQVEIIGDKAYISVIPGEEYMKWKKYPKEKPNCRKLFKKLTIVQMPY 180
TNA V+L+ PDKVV VE+ +K Y+S+ PGE K+KKY KEK N R+LFKK+ IVQMPY
Sbjct: 120 TNASVDLNNPDKVVHVEVFKNKTYVSITPGE---KFKKYTKEKRNARELFKKVVIVQMPY 176
Query: 181 WGDYKTARAFGEKIGRAAQAFEVKELIIAPKEKMNAYELMAFLRGVKEGQESRYQIQKEA 240
G+ + FGE IGRAAQ FEVKELIIAPKEK++AYELM F++GVK GQ SRY+IQK A
Sbjct: 177 LGEKIVCKRFGEAIGRAAQGFEVKELIIAPKEKVDAYELMEFIKGVKIGQHSRYEIQKRA 236
Query: 241 YPWEVEKVPVTVWDLYQVIRDKRRNRRLIIITDPKGPTLNEVKEKLAKDMYYAKEIVIFI 300
YP+E++ VPVTV DLYQV+RDKRR+ RL+IITDPKG L+++K+KLA D+ +EI++F
Sbjct: 237 YPFEIKLVPVTVQDLYQVVRDKRRDNRLLIITDPKGDELSKIKDKLAYDLRKKREIIVFC 296
Query: 301 GSREGIPVGLFRFADYVIDLAPYMTFATEHGIPATLVALWTIYEEE 346
GSREGIP GLFRFADY++DLAP+MTFATEH IPA L+ALW +Y E
Sbjct: 297 GSREGIPRGLFRFADYIVDLAPHMTFATEHAIPAALIALWGVYSGE 342
>gi|11499808 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448638|pir||B69528 conserved hypothetical protein
AF2226 - Archaeoglobus fulgidus
>gi|2648298|gb|AAB89028.1| (AE000951) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 352
Score = 375 bits (952), Expect = e-103
Identities = 192/350 (54%), Positives = 255/350 (72%), Gaps = 3/350 (0%)
Query: 4 IVKTQMDMEAVAGNYIKEVLPEAKVTIAPGGYPGLIIVESEDEKAMEKILEVPEVEKVFP 63
+VKT +ME VA ++IK+ + + ++ I P G+ GL+IV DE EK+ E+PE+E + P
Sbjct: 3 LVKTLREMEYVAASHIKDAIGDVEIEIRPSGFLGLLIVHC-DESLKEKLEEIPEIETIIP 61
Query: 64 VLIEVPATLDDIKNAAEEIVKHIKEGETFAVRTKKRGKKDYSSVDVNVVLGARIKDLTNA 123
VL+E A LD+I + AE + + +K TFA+RTK+RG D++S+DVN+ LG RI++LT
Sbjct: 62 VLVECEAKLDEILSKAEVVAEKVKGARTFAIRTKRRGTHDFTSLDVNLDLGDRIRELTGC 121
Query: 124 EVNLSYPDKVVQVEIIGDKAYISVIPGEEYMKWKKYPKEKPNCRKLFKKLTIVQMPYWGD 183
EV+L++PDK V VEIIG +A+I VI G E + KKY EK + RKLF K++ VQMPY D
Sbjct: 122 EVDLNFPDKAVYVEIIGKRAFIGVIDGSE--ERKKYTPEKVDSRKLFGKISFVQMPYLED 179
Query: 184 YKTARAFGEKIGRAAQAFEVKELIIAPKEKMNAYELMAFLRGVKEGQESRYQIQKEAYPW 243
K A GE+IGRAAQAFE+KELIIAP + +NA+EL F++GV+ GQ +RY+IQ+ AY
Sbjct: 180 TKAALEIGERIGRAAQAFEIKELIIAPHDYVNAFELEYFIKGVRRGQIARYKIQERAYAR 239
Query: 244 EVEKVPVTVWDLYQVIRDKRRNRRLIIITDPKGPTLNEVKEKLAKDMYYAKEIVIFIGSR 303
EV KVPV V DLYQ RDKRR R ++IITDP G +++VKE+L + + +A E+VIF GSR
Sbjct: 240 EVRKVPVFVRDLYQTARDKRRKRNVLIITDPTGRQISDVKEELVRRIRFADEVVIFAGSR 299
Query: 304 EGIPVGLFRFADYVIDLAPYMTFATEHGIPATLVALWTIYEEELRKRGEI 353
GIP GLFR AD+VIDLAPY+TFATE IP TL AL T+YEE+ RG I
Sbjct: 300 VGIPKGLFRLADFVIDLAPYITFATEQTIPVTLSALLTVYEEDEEARGVI 349
>pir||G72585 hypothetical protein APE1156 - Aeropyrum pernix (strain K1)
>gi|5104827|dbj|BAA80141.1| (AP000061) 373aa long
hypothetical protein [Aeropyrum pernix]
Length = 373
Score = 242 bits (612), Expect = 4e-63
Identities = 139/346 (40%), Positives = 213/346 (61%), Gaps = 9/346 (2%)
Query: 4 IVKTQMDMEAVAGNYIKEVLPEAKVTIAPGGYPGLIIVES--EDEKAMEKILE-VPEVEK 60
+VKT + E +A I+E P + P G+ GL++V + E ILE V E ++
Sbjct: 21 LVKTSLGFERIAAARIEEEAPHLRARPIPRGFKGLVLVYGCRDPEADARLILERVVEADR 80
Query: 61 VFPVLIEVPATLDDIKNAAEEIVK-HIKEGETFAVRTKKRGKKDYSSVDVNVVLGARIKD 119
V V A+L+++ AA E + I GE FAVRT +RG Y+SVDVNVV+G ++
Sbjct: 81 VLVVHAVSRASLEEMAAAAAEAARGRIGGGECFAVRTTRRGSHGYTSVDVNVVVGDAVRR 140
Query: 120 LTNAEVNLSYPDKVVQVEIIGDKAYISVIPGEEYMKWKKYPKEKPNCRKLFKKLTIVQMP 179
T A VNL PDKVV VEII D A IS+ PG M+W+K + P L ++ +VQMP
Sbjct: 141 ATGACVNLESPDKVVAVEIIQDLALISIYPGS--MEWRKMRGKHP-VLPLLSRVAVVQMP 197
Query: 180 YWGDYKTARAFGEKIGRAAQAFEVKELIIAPKEKMNAYELMAFLRGVKEGQESRYQIQKE 239
Y G R G +IGR Q FEV+EL++AP ++A +L FL+GV EG ESR+++Q++
Sbjct: 198 YLGPLDACRNMGVRIGREVQNFEVRELVVAPTGLVDARQLAEFLQGVFEGVESRFEVQRK 257
Query: 240 AYPWEVEKVPVTVWDLYQVIRDKRRNRRLIIITDPKGPTLNEVKEKLAKDMYYAKEIVIF 299
+Y +VPV + DL+Q++RD+R II+ +P+G ++ V ++L + ++ + +
Sbjct: 258 SYHRRARRVPVYLQDLHQLVRDRRGEP--IIVMEPEGEHISRVADRLWEMFRGSRRVNVL 315
Query: 300 IGSREGIPVGLFRFADYVIDLAPYMTFATEHGIPATLVALWTIYEE 345
+GSREGIP+G++R+AD V+D+AP +T +T++ + LVA+ T+ E
Sbjct: 316 VGSREGIPLGVYRYADLVVDIAPGITLSTDYAAASALVAIATVLYE 361
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.393
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131464381
Number of Sequences: 2977
Number of extensions: 5518610
Number of successful extensions: 13921
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13909
Number of HSP's gapped (non-prelim): 5
length of query: 355
length of database: 189,106,746
effective HSP length: 57
effective length of query: 298
effective length of database: 154,992,987
effective search space: 46187910126
effective search space used: 46187910126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 165 (68.7 bits)