BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0051 (PAB0051) DE:Hypothetical protein
         (158 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75195 hypothetical protein PAB0051 - Pyrococcus abyssi (st...   316  1e-85
pir||B71228 hypothetical protein PH0084 - Pyrococcus horikoshii ...   242  2e-63

>pir||G75195 hypothetical protein PAB0051 - Pyrococcus abyssi (strain Orsay)
           >gi|5457523|emb|CAB49014.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 158
           
 Score =  316 bits (800), Expect = 1e-85
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MKFIATCPPGREGDAILELEWGIGAKVKRTKWRGVLVGETELEKEEAIRKLKSFETFALQ 60
           MKFIATCPPGREGDAILELEWGIGAKVKRTKWRGVLVGETELEKEEAIRKLKSFETFALQ
Sbjct: 1   MKFIATCPPGREGDAILELEWGIGAKVKRTKWRGVLVGETELEKEEAIRKLKSFETFALQ 60

Query: 61  RFIPIDSLIPLERLEEEIKRLCSKIPMGKSFAVRAKVRGAKIGEKKLETEIGGLIKRITG 120
           RFIPIDSLIPLERLEEEIKRLCSKIPMGKSFAVRAKVRGAKIGEKKLETEIGGLIKRITG
Sbjct: 61  RFIPIDSLIPLERLEEEIKRLCSKIPMGKSFAVRAKVRGAKIGEKKLETEIGGLIKRITG 120

Query: 121 NPVNLGNPDIIVTIEVLGNKAGIGILKPQEILKFEVKP 158
           NPVNLGNPDIIVTIEVLGNKAGIGILKPQEILKFEVKP
Sbjct: 121 NPVNLGNPDIIVTIEVLGNKAGIGILKPQEILKFEVKP 158


>pir||B71228 hypothetical protein PH0084 - Pyrococcus horikoshii
           >gi|3256470|dbj|BAA29153.1| (AP000001) 158aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 158
           
 Score =  242 bits (610), Expect = 2e-63
 Identities = 115/158 (72%), Positives = 135/158 (84%)

Query: 1   MKFIATCPPGREGDAILELEWGIGAKVKRTKWRGVLVGETELEKEEAIRKLKSFETFALQ 60
           MKFIATCPPGREG+AILELEWGI AKV+RT+W GVL+GETEL KEE  ++L+SFETFALQ
Sbjct: 1   MKFIATCPPGREGEAILELEWGIEAKVRRTRWGGVLIGETELNKEEVFKRLQSFETFALQ 60

Query: 61  RFIPIDSLIPLERLEEEIKRLCSKIPMGKSFAVRAKVRGAKIGEKKLETEIGGLIKRITG 120
           + IPID  IPLE+L + I  + +KIP GKSFAVRAKVRGAKIGEK LE EIGGLIKRITG
Sbjct: 61  KIIPIDLFIPLEKLNDVIGEIATKIPKGKSFAVRAKVRGAKIGEKSLEIEIGGLIKRITG 120

Query: 121 NPVNLGNPDIIVTIEVLGNKAGIGILKPQEILKFEVKP 158
           NPVNL NP+ ++ IEVLG KAG+ ++KP +I+K EVKP
Sbjct: 121 NPVNLENPEYLLIIEVLGKKAGVALIKPDDIIKLEVKP 158


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.142    0.405 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60557086
Number of Sequences: 2977
Number of extensions: 2502766
Number of successful extensions: 5896
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5892
Number of HSP's gapped (non-prelim): 2
length of query: 158
length of database: 189,106,746
effective HSP length: 53
effective length of query: 105
effective length of database: 157,386,935
effective search space: 16525628175
effective search space used: 16525628175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 162 (67.5 bits)