BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0052 (PAB0052) DE:Hypothetical protein
         (147 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75196 hypothetical protein PAB0052 - Pyrococcus abyssi (st...   278  2e-74
pir||D71228 hypothetical protein PH0086 - Pyrococcus horikoshii ...   175  3e-43

>pir||A75196 hypothetical protein PAB0052 - Pyrococcus abyssi (strain Orsay)
           >gi|5457525|emb|CAB49016.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 147
           
 Score =  278 bits (703), Expect = 2e-74
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MSSLRSLAMPFLSNSISGATTLTSFIVAYFKAEFILSTNSLVLSGKVSPSSLLKPTIMSP 60
           MSSLRSLAMPFLSNSISGATTLTSFIVAYFKAEFILSTNSLVLSGKVSPSSLLKPTIMSP
Sbjct: 1   MSSLRSLAMPFLSNSISGATTLTSFIVAYFKAEFILSTNSLVLSGKVSPSSLLKPTIMSP 60

Query: 61  PPRASKREAATPISTKFLAGIQTLLAVSLAFSKSSSSLAVTSGTLPSTNLLPAIFENSCR 120
           PPRASKREAATPISTKFLAGIQTLLAVSLAFSKSSSSLAVTSGTLPSTNLLPAIFENSCR
Sbjct: 61  PPRASKREAATPISTKFLAGIQTLLAVSLAFSKSSSSLAVTSGTLPSTNLLPAIFENSCR 120

Query: 121 KSIFTIFKGTFNSLEKNSATLFVTLSS 147
           KSIFTIFKGTFNSLEKNSATLFVTLSS
Sbjct: 121 KSIFTIFKGTFNSLEKNSATLFVTLSS 147


>pir||D71228 hypothetical protein PH0086 - Pyrococcus horikoshii
           >gi|3256472|dbj|BAA29155.1| (AP000001) 135aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 135
           
 Score =  175 bits (438), Expect = 3e-43
 Identities = 96/130 (73%), Positives = 102/130 (77%)

Query: 18  GATTLTSFIVAYFKAEFILSTNSLVLSGKVSPSSLLKPTIMSPPPRASKREAATPISTKF 77
           GATTLT FIVAY KA   LSTNS VLSGKVSPSSLLKPTI+SPPPRAS+REAA  I TKF
Sbjct: 3   GATTLTLFIVAYSKALLTLSTNSFVLSGKVSPSSLLKPTIISPPPRASRREAAILIKTKF 62

Query: 78  LAGIQTLLAVSLAFSKSSSSLAVTSGTLPSTNLLPAIFENSCRKSIFTIFKGTFNSLEKN 137
           LAG  TLLAVSLA S +S+SLA T GT PSTN LP   ENS RK    IFKG  +S EKN
Sbjct: 63  LAGTHTLLAVSLALSITSNSLAETLGTFPSTNALPESLENSLRKLTLIIFKGILSSFEKN 122

Query: 138 SATLFVTLSS 147
           SATLF+TLSS
Sbjct: 123 SATLFITLSS 132


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.126    0.330 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43672239
Number of Sequences: 2977
Number of extensions: 1441684
Number of successful extensions: 6490
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6488
Number of HSP's gapped (non-prelim): 2
length of query: 147
length of database: 189,106,746
effective HSP length: 64
effective length of query: 83
effective length of database: 150,803,578
effective search space: 12516696974
effective search space used: 12516696974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 161 (67.1 bits)