BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0053 (PAB0053) DE:Hypothetical protein
         (225 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75196 hypothetical protein PAB0053 - Pyrococcus abyssi (st...   452  e-126
pir||E71228 hypothetical protein PH0087 - Pyrococcus horikoshii ...   356  1e-97

>pir||B75196 hypothetical protein PAB0053 - Pyrococcus abyssi (strain Orsay)
           >gi|5457526|emb|CAB49017.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 225
           
 Score =  452 bits (1151), Expect = e-126
 Identities = 225/225 (100%), Positives = 225/225 (100%)

Query: 1   MDKYRLVVILIILVGISGVIITKVSKHYQGGEIYEAANEAMNLLAEGFNVTIKVTSVDGR 60
           MDKYRLVVILIILVGISGVIITKVSKHYQGGEIYEAANEAMNLLAEGFNVTIKVTSVDGR
Sbjct: 1   MDKYRLVVILIILVGISGVIITKVSKHYQGGEIYEAANEAMNLLAEGFNVTIKVTSVDGR 60

Query: 61  TITGELFAAKGSEIIIIVNGTKITVGGPSATKEDIKAKHIEVIHKGKVYVYEVPGTKGDG 120
           TITGELFAAKGSEIIIIVNGTKITVGGPSATKEDIKAKHIEVIHKGKVYVYEVPGTKGDG
Sbjct: 61  TITGELFAAKGSEIIIIVNGTKITVGGPSATKEDIKAKHIEVIHKGKVYVYEVPGTKGDG 120

Query: 121 WKTFSWYEKYRTQDTYSMRFSGLIYIENISIIELGELKYSADYLTFGSVTIKGIYGNNAI 180
           WKTFSWYEKYRTQDTYSMRFSGLIYIENISIIELGELKYSADYLTFGSVTIKGIYGNNAI
Sbjct: 121 WKTFSWYEKYRTQDTYSMRFSGLIYIENISIIELGELKYSADYLTFGSVTIKGIYGNNAI 180

Query: 181 IWANYVPIEILREYLKGKEVFYYGTLYVNSEKRNLPLKVLEVRSG 225
           IWANYVPIEILREYLKGKEVFYYGTLYVNSEKRNLPLKVLEVRSG
Sbjct: 181 IWANYVPIEILREYLKGKEVFYYGTLYVNSEKRNLPLKVLEVRSG 225


>pir||E71228 hypothetical protein PH0087 - Pyrococcus horikoshii
           >gi|3256473|dbj|BAA29156.1| (AP000001) 224aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 224
           
 Score =  356 bits (904), Expect = 1e-97
 Identities = 170/224 (75%), Positives = 207/224 (91%), Gaps = 1/224 (0%)

Query: 1   MDKYRLVVILIILVGISGVIITKVSKHYQGGEIYEAANEAMNLLAEGFNVTIKVTSVDGR 60
           MDKY+LVV LII++ + G+I+TKV+KHY+GGEIYEAAN+AMNLL++GFNV+++V +VDGR
Sbjct: 1   MDKYKLVVTLIIIIALGGIILTKVAKHYEGGEIYEAANDAMNLLSKGFNVSVEVITVDGR 60

Query: 61  TITGELFAAKGSEIIIIVNGTKITVGGPSATKEDIKAKHIEVIHKGKVYVYEVPGTKGDG 120
            I+GE+F+AKGSEI IIVNGTK++VGGPSAT+E+IKAK+I+VI +GKVYVYEVPGT+  G
Sbjct: 61  KISGEVFSAKGSEITIIVNGTKVSVGGPSATREEIKAKYIKVITRGKVYVYEVPGTEDSG 120

Query: 121 WKTFSWYEKYRTQDTYSMRFSGLIYIENISIIELGELKYSADYLTFGSVTIKGIYGNNAI 180
            K F  YEKYRT+DTYSMRFSGLIYIENIS+IE+G+LKYSADYLTFGS+TIK I+GNNAI
Sbjct: 121 -KPFFRYEKYRTKDTYSMRFSGLIYIENISLIEVGKLKYSADYLTFGSITIKEIHGNNAI 179

Query: 181 IWANYVPIEILREYLKGKEVFYYGTLYVNSEKRNLPLKVLEVRS 224
           IWANYVPIEIL E+LKGK VFYYGTLYVNSEKR LPL+++EVR+
Sbjct: 180 IWANYVPIEILEEHLKGKRVFYYGTLYVNSEKRTLPLRLIEVRA 223


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.140    0.398 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83648329
Number of Sequences: 2977
Number of extensions: 3559249
Number of successful extensions: 8517
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8514
Number of HSP's gapped (non-prelim): 2
length of query: 225
length of database: 189,106,746
effective HSP length: 55
effective length of query: 170
effective length of database: 156,189,961
effective search space: 26552293370
effective search space used: 26552293370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)