BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0054 (PAB0054) DE:Hypothetical protein
(338 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75196 hypothetical protein PAB0054 - Pyrococcus abyssi (st... 654 0.0
pir||F71228 hypothetical protein PH0088 - Pyrococcus horikoshii ... 457 e-128
sp|Q57862|Y419_METJA HYPOTHETICAL PROTEIN MJ0419 >gi|2128310|pir... 113 4e-24
pir||B69187 conserved hypothetical protein MTH655 - Methanobacte... 97 3e-19
pir||F69061 hypothetical protein MTH1461 - Methanobacterium ther... 90 3e-17
>pir||C75196 hypothetical protein PAB0054 - Pyrococcus abyssi (strain Orsay)
>gi|5457527|emb|CAB49018.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 338
Score = 654 bits (1670), Expect = 0.0
Identities = 338/338 (100%), Positives = 338/338 (100%)
Query: 1 MKDTPLLIPILLVFFVSVGLARVKTIAITGLFALAFVYGYRKGEKLGKPKREVKVRDTIF 60
MKDTPLLIPILLVFFVSVGLARVKTIAITGLFALAFVYGYRKGEKLGKPKREVKVRDTIF
Sbjct: 1 MKDTPLLIPILLVFFVSVGLARVKTIAITGLFALAFVYGYRKGEKLGKPKREVKVRDTIF 60
Query: 61 LAMLLISLFIILFQILILGEIPLLDPQIRSHLNPKMTMLTYLLGLPSSVYLFMKGRKIAL 120
LAMLLISLFIILFQILILGEIPLLDPQIRSHLNPKMTMLTYLLGLPSSVYLFMKGRKIAL
Sbjct: 61 LAMLLISLFIILFQILILGEIPLLDPQIRSHLNPKMTMLTYLLGLPSSVYLFMKGRKIAL 120
Query: 121 LYPILVSLYAYRTPILVSLIALTVPYLETQKDNRRVIIVTISGLFLILAVSYLRGSLTFL 180
LYPILVSLYAYRTPILVSLIALTVPYLETQKDNRRVIIVTISGLFLILAVSYLRGSLTFL
Sbjct: 121 LYPILVSLYAYRTPILVSLIALTVPYLETQKDNRRVIIVTISGLFLILAVSYLRGSLTFL 180
Query: 181 TRIQGTTSVLDVIVKRCSLSGFYKGKLQWTGVTSYFVGGLGPRSLIAKYLGVSGVTITAT 240
TRIQGTTSVLDVIVKRCSLSGFYKGKLQWTGVTSYFVGGLGPRSLIAKYLGVSGVTITAT
Sbjct: 181 TRIQGTTSVLDVIVKRCSLSGFYKGKLQWTGVTSYFVGGLGPRSLIAKYLGVSGVTITAT 240
Query: 241 LIGGMYLDFGLLSIIEITLLGLYYGITKRLTSEVGKAFYYSTLAYGIVGVETGILDLPTY 300
LIGGMYLDFGLLSIIEITLLGLYYGITKRLTSEVGKAFYYSTLAYGIVGVETGILDLPTY
Sbjct: 241 LIGGMYLDFGLLSIIEITLLGLYYGITKRLTSEVGKAFYYSTLAYGIVGVETGILDLPTY 300
Query: 301 LMFLIGAIIAWREIDGDIRKSISNVIANVLSIGKSREG 338
LMFLIGAIIAWREIDGDIRKSISNVIANVLSIGKSREG
Sbjct: 301 LMFLIGAIIAWREIDGDIRKSISNVIANVLSIGKSREG 338
>pir||F71228 hypothetical protein PH0088 - Pyrococcus horikoshii
>gi|3256474|dbj|BAA29157.1| (AP000001) 336aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 336
Score = 457 bits (1163), Expect = e-128
Identities = 217/331 (65%), Positives = 272/331 (81%)
Query: 1 MKDTPLLIPILLVFFVSVGLARVKTIAITGLFALAFVYGYRKGEKLGKPKREVKVRDTIF 60
M+D PLLIPILL+ FVS+GLARVKTI + G F+L FVYGY KGE +G P+R ++V D +F
Sbjct: 1 MRDIPLLIPILLILFVSLGLARVKTILVVGAFSLFFVYGYLKGENIGTPRRRIEVNDDVF 60
Query: 61 LAMLLISLFIILFQILILGEIPLLDPQIRSHLNPKMTMLTYLLGLPSSVYLFMKGRKIAL 120
ML++S+ IIL QI L IPLL P +R+HLNPK+T LTY LGLPSSVYL ++G+K+
Sbjct: 61 SVMLILSVIIILIQIANLRGIPLLHPHLRTHLNPKLTGLTYFLGLPSSVYLIIRGKKLGF 120
Query: 121 LYPILVSLYAYRTPILVSLIALTVPYLETQKDNRRVIIVTISGLFLILAVSYLRGSLTFL 180
LYP++V+LYAYRTP+LV+LIALT+PYLE K ++ + + + G+FL+ +SY RGSL+FL
Sbjct: 121 LYPLMVALYAYRTPVLVALIALTLPYLEDMKKGKKAVEIGVIGIFLLFLISYFRGSLSFL 180
Query: 181 TRIQGTTSVLDVIVKRCSLSGFYKGKLQWTGVTSYFVGGLGPRSLIAKYLGVSGVTITAT 240
TRIQGTTSVLDVIVKRCS+ GFYKG+LQ GV SY GGLGPR++IA+YLG+ GVTITAT
Sbjct: 181 TRIQGTTSVLDVIVKRCSVVGFYKGELQLAGVKSYIFGGLGPRTMIARYLGIPGVTITAT 240
Query: 241 LIGGMYLDFGLLSIIEITLLGLYYGITKRLTSEVGKAFYYSTLAYGIVGVETGILDLPTY 300
LIGGMYLDFGLLS +E+ LLG YYGI K+L S+VG++FYYSTL+YGIVGVETGILDLP Y
Sbjct: 241 LIGGMYLDFGLLSSLEMLLLGFYYGIMKKLRSDVGRSFYYSTLSYGIVGVETGILDLPVY 300
Query: 301 LMFLIGAIIAWREIDGDIRKSISNVIANVLS 331
LM L+G +IAWRE DG++RK I +I+ + S
Sbjct: 301 LMILVGLLIAWREFDGNLRKDIRRIISWISS 331
>sp|Q57862|Y419_METJA HYPOTHETICAL PROTEIN MJ0419 >gi|2128310|pir||C64352 hypothetical
protein MJ0419 - Methanococcus jannaschii
>gi|1591122|gb|AAB98417.1| (U67494) M. jannaschii
predicted coding region MJ0419 [Methanococcus
jannaschii]
Length = 354
Score = 113 bits (279), Expect = 4e-24
Identities = 83/299 (27%), Positives = 152/299 (50%), Gaps = 23/299 (7%)
Query: 32 FALAFVYGYRKGEKLGKPKREVKVR----DTIFLAMLLISLFIILFQILILGEIPLLDPQ 87
F ++F G R +G K +K+ + ++++ L + ++ + ++PL +P
Sbjct: 46 FYISFTAGKRLYYLIGIDKENLKINLKKHYNFGIFLMIVGLIAVTSDLIWVKDVPLFNPL 105
Query: 88 IRSHLNPKMTMLTYLLGLPSSVYLFMKG---RKIAL---LYPILVSLYAYRTPILVSLIA 141
R LN T L++L + ++ + +KI L ++ IL+ L YRT +LV LI+
Sbjct: 106 SRKFLNVYFTTLSHLFLVGWAIVVASSNIDKKKILLYTIIFSILIMLLGYRTNVLVLLIS 165
Query: 142 L-TVPYLETQKDNRRVIIVTISGLFLILAVSYLR------GSLTFLTRIQGTTSVLDVIV 194
+ + Y + + NR ++ I ++L +S LR +RI T S+ D+I
Sbjct: 166 VGAILYYKNKISNREILKYGILVFVILLGLSILRLYALGVEGNPITSRISLTMSIYDIIF 225
Query: 195 KRCSLSGFYKGKLQWTGVTSYFVGGLGPRSLIAKYLGVSGVTITATLIGGMYLDFGLLSI 254
+ +G + G + ++ V SY G R++IAK LG+ V+IT T++G + D+G L+I
Sbjct: 226 N--NFNGVFNGYIHYSAVFSYLGLCNGARTVIAKTLGIYNVSITPTIVGAVIGDYGTLAI 283
Query: 255 IE-ITLLGLYYGITKRLTSEVGKAF---YYSTLAYGIVGVETGILDLPTYLMFLIGAII 309
I +LG++ G +L +V + Y AY ++G+E+GILD+ L + G I+
Sbjct: 284 IPYFGILGIFLGFFYKLAKDVKGIYLGIYGILFAYTLIGIESGILDIDVILYYFFGLIL 342
>pir||B69187 conserved hypothetical protein MTH655 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621737|gb|AAB85160.1| (AE000845) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 428
Score = 96.7 bits (237), Expect = 3e-19
Identities = 85/291 (29%), Positives = 139/291 (47%), Gaps = 41/291 (14%)
Query: 55 VRDTIFLAMLLISLFIILFQILILGEIPLLDPQIRSHLNPKMTMLTYLLGLPSSVYLF-- 112
+R F ++ S F+ + + +G IPLL P +R LNPK+T+ YL+ +P + ++
Sbjct: 134 IRSMGFTLFIIGSAFLAI-TLTDVGGIPLLKPSLRYLLNPKLTIPVYLM-IPGTAFMLAY 191
Query: 113 ----------------MKGRKIALLYPILVSLYAYRTPIL-VSLIALTVPYLETQKDNRR 155
+ ++L ++++L YRTP++ V LI + Y +
Sbjct: 192 ITDKMQKSVIDRSTARFRAITVSLTCLVMLALLGYRTPLVAVILITFIMGYYSGLFEIWE 251
Query: 156 VIIVTISGLFLILAVSYLR----------GSLTFL-TRIQGTTSVLDVIVKRCSLSGFYK 204
V+ L +I+ + Y R G LT L R T S+L+ + ++G
Sbjct: 252 VLGSFAVALMIIMGIGYFRSVEEYSLSNLGPLTVLKMRASFTMSILNRLSALAGMTGVMH 311
Query: 205 GKLQWTGVTSYFVGGLGPRSLIAK-YLGVSGVTITATLIGGMYLDFGLLSI-IEITLLGL 262
G L + + G GPR+LI K L +GVTIT TL G M ++FG + + +++LGL
Sbjct: 312 GDLTLSMIPG---AGSGPRALIGKLVLWRTGVTITPTLFGQMLVEFGTIGVAFGMSILGL 368
Query: 263 YYGITKRLTSEVGKAFY---YS-TLAYGIVGVETGILDLPTYLMFLIGAII 309
GI R+ + +FY YS +AY ++ +ETGILD + L II
Sbjct: 369 ILGIGYRIMQKTRDSFYIMLYSIVMAYCLISIETGILDQLVVIYILCAFII 419
>pir||F69061 hypothetical protein MTH1461 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622575|gb|AAB85936.1| (AE000907)
conserved protein [Methanobacterium thermoautotrophicum]
Length = 359
Score = 90.5 bits (221), Expect = 3e-17
Identities = 93/311 (29%), Positives = 149/311 (47%), Gaps = 33/311 (10%)
Query: 29 TGLFALAFVYGYRKGEKLGKPKREVKVRDTIFLAMLLISLFIILFQILILGEIPLLDPQI 88
TG AL G ++GK + + + +A+++ + I + +LG IPLL +
Sbjct: 46 TGTVALIGGVYLSSGFRIGKIRTH-EGSEPFLVALVIAGILIQAINLYLLGGIPLLSGYL 104
Query: 89 RSHLNPKMTMLTYLLGLPS-----SVYLFMKGRKIALLYPILVSLYAYRTPILVSLIALT 143
++ K+ ++YLL LPS + Y K ++ IL +L YRT ++V L++ T
Sbjct: 105 KARAVTKLWFISYLLFLPSINILLAAYPRRKYYIPLIMGAILFALTGYRTTVVVILLSGT 164
Query: 144 VPYLETQKDNRRVIIVTISGLFL-ILAVSY------------LRGSLTFLTRIQGTTSVL 190
+ + + + R + V IS L + L V Y L L R T +V
Sbjct: 165 ITLYYSARPSWRELGVLISALAVAALLVGYVAVKSIEWQTWTLNPVELLLYRAGYTLTVF 224
Query: 191 DVIVKRCSLSGFYKGKLQWTGVTSYFVGGLGPRSLIAK-YLGVSGVTITATLIGGMYLDF 249
D I+ SL G GKL + +T Y + PR+++ + LG S T T+T+ G LDF
Sbjct: 225 DRII---SLQGATGGKLLYYTLTGY-IHSTDPRAIVGEVVLGYSHST-TSTIFGPSLLDF 279
Query: 250 GLLSII-EITLLGLYYGITKRLTSEVGKAF---YYSTLAYGIVGVETGILDLPTYLMFLI 305
GL +++ ++ +LGL G+ R+ + F Y LA IV VETG DL ++ +LI
Sbjct: 280 GLHAMLFQMFILGLLLGLMHRIQGVLDGFFTGIYSIILAQTIVWVETGPTDLVVWVFYLI 339
Query: 306 GAI----IAWR 312
G I + WR
Sbjct: 340 GFISAIYVLWR 350
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.147 0.418
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114842279
Number of Sequences: 2977
Number of extensions: 4741390
Number of successful extensions: 15324
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15311
Number of HSP's gapped (non-prelim): 6
length of query: 338
length of database: 189,106,746
effective HSP length: 54
effective length of query: 284
effective length of database: 156,788,448
effective search space: 44527919232
effective search space used: 44527919232
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 165 (68.7 bits)