BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0055 (PAB0055) DE:Hypothetical protein
         (327 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75196 hypothetical protein PAB0055 - Pyrococcus abyssi (st...   645  0.0
pir||G71228 hypothetical protein PH0089 - Pyrococcus horikoshii ...   399  e-110

>pir||D75196 hypothetical protein PAB0055 - Pyrococcus abyssi (strain Orsay)
           >gi|5457528|emb|CAB49019.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 327
           
 Score =  645 bits (1647), Expect = 0.0
 Identities = 327/327 (100%), Positives = 327/327 (100%)

Query: 1   MMETSEKVFLTLLLTFLALASLGKGNIKVQPLLYALAFTGLFVAGLNSRLRIPDHFWPLL 60
           MMETSEKVFLTLLLTFLALASLGKGNIKVQPLLYALAFTGLFVAGLNSRLRIPDHFWPLL
Sbjct: 1   MMETSEKVFLTLLLTFLALASLGKGNIKVQPLLYALAFTGLFVAGLNSRLRIPDHFWPLL 60

Query: 61  SLLVISPLGFRWIIIWVGIVIPLAIYIRVRGDLRPLKATLVFTSILLPLIPAIFGLIPIL 120
           SLLVISPLGFRWIIIWVGIVIPLAIYIRVRGDLRPLKATLVFTSILLPLIPAIFGLIPIL
Sbjct: 61  SLLVISPLGFRWIIIWVGIVIPLAIYIRVRGDLRPLKATLVFTSILLPLIPAIFGLIPIL 120

Query: 121 NPQTRFHPLSILYVLSGYSIALLNSITPSILITILGILIGVMSMYRSVIALSILPLIYRG 180
           NPQTRFHPLSILYVLSGYSIALLNSITPSILITILGILIGVMSMYRSVIALSILPLIYRG
Sbjct: 121 NPQTRFHPLSILYVLSGYSIALLNSITPSILITILGILIGVMSMYRSVIALSILPLIYRG 180

Query: 181 KVSIKLIVFALLGVLLISIGRGVGVEDIVHRPSFTYGIYEKLYEVGMPWGKIMILPEPIP 240
           KVSIKLIVFALLGVLLISIGRGVGVEDIVHRPSFTYGIYEKLYEVGMPWGKIMILPEPIP
Sbjct: 181 KVSIKLIVFALLGVLLISIGRGVGVEDIVHRPSFTYGIYEKLYEVGMPWGKIMILPEPIP 240

Query: 241 GYKVAAMFGGHKRYTYTIFGEAVADFGILGLFEGFLLGLCIRKLRKLKWAHAFGLTILSL 300
           GYKVAAMFGGHKRYTYTIFGEAVADFGILGLFEGFLLGLCIRKLRKLKWAHAFGLTILSL
Sbjct: 241 GYKVAAMFGGHKRYTYTIFGEAVADFGILGLFEGFLLGLCIRKLRKLKWAHAFGLTILSL 300

Query: 301 GIEVGLDAFKLATLFILPFLGRDSNES 327
           GIEVGLDAFKLATLFILPFLGRDSNES
Sbjct: 301 GIEVGLDAFKLATLFILPFLGRDSNES 327


>pir||G71228 hypothetical protein PH0089 - Pyrococcus horikoshii
           >gi|3256475|dbj|BAA29158.1| (AP000001) 334aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 334
           
 Score =  399 bits (1014), Expect = e-110
 Identities = 201/332 (60%), Positives = 256/332 (76%), Gaps = 7/332 (2%)

Query: 2   METSEKVFLTLLLTFLALASLGKGNI---KVQP--LLYALAFTGLFVAGLNSRL-RIPDH 55
           METSEK+F+ L L FL LA +GK  I    + P  L YA+ F  LFV GL ++L RIP +
Sbjct: 1   METSEKIFVGLSLGFLVLAIIGKLIIFGEAINPGGLAYAILFLCLFVVGLEAKLPRIPPY 60

Query: 56  FWPLLSLLVISPLGFRWIIIWVGIVIPLAIYIRVRGDLRPLKATLVFTSILLPLIPAIFG 115
            W ++SL+ IS LG  W+ IW+ +VIP+A+Y+  +G L+  K  LV  S+LLPLIPA  G
Sbjct: 61  LWLVISLITISILGKIWLTIWILLVIPIALYLNTKG-LKVFKIVLVGISLLLPLIPAFSG 119

Query: 116 LIPILNPQTRFHPLSILYVLSGYSIALLNSITPSILITILGILIGVMSMYRSVIALSILP 175
           +IPILNP TRF PLSILYVLSGY IALLNSI+P+++IT+ G  +G++SMYRSVIALSILP
Sbjct: 120 IIPILNPNTRFDPLSILYVLSGYGIALLNSISPNVVITLYGTALGILSMYRSVIALSILP 179

Query: 176 LIYRGKVSIKLIVFALLGVLLISIGRGVGVEDIVHRPSFTYGIYEKLYEVGMPWGKIMIL 235
           LIYR K+  K+I   ++G+ +IS+ RG+GV +I++RP+FTY +YE+LYE+G+P+GK+ IL
Sbjct: 180 LIYRDKIPWKIIGIGIVGIAIISVARGIGVSEILYRPAFTYRVYERLYEIGVPFGKLFIL 239

Query: 236 PEPIPGYKVAAMFGGHKRYTYTIFGEAVADFGILGLFEGFLLGLCIRKLRKLKWAHAFGL 295
            E IPGYKV  +FG   RYTYTIFGE+VADFGI G+ EGFLLGL IR+ RK KW H FGL
Sbjct: 240 KEAIPGYKVGQLFGSPNRYTYTIFGESVADFGIFGVLEGFLLGLSIREARKEKWVHTFGL 299

Query: 296 TILSLGIEVGLDAFKLATLFILPFLGRDSNES 327
           TILSLGIEVGLD FKLATLF+LPF+G   +E+
Sbjct: 300 TILSLGIEVGLDTFKLATLFLLPFIGGSKSEN 331


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.150    0.453 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119689066
Number of Sequences: 2977
Number of extensions: 5361293
Number of successful extensions: 17809
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17804
Number of HSP's gapped (non-prelim): 2
length of query: 327
length of database: 189,106,746
effective HSP length: 49
effective length of query: 278
effective length of database: 159,780,883
effective search space: 44419085474
effective search space used: 44419085474
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 165 (68.7 bits)