BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0056 (PAB0056) DE:Hypothetical protein
         (456 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75196 hypothetical protein PAB0056 - Pyrococcus abyssi (st...   912  0.0
pir||H71228 hypothetical protein PH0090 - Pyrococcus horikoshii ...   633  e-180

>pir||E75196 hypothetical protein PAB0056 - Pyrococcus abyssi (strain Orsay)
           >gi|5457529|emb|CAB49020.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 456
           
 Score =  912 bits (2331), Expect = 0.0
 Identities = 456/456 (100%), Positives = 456/456 (100%)

Query: 1   MKAKIEVLVFLGALILGILSLPPENSLTYDGALYIDIARNLAKDLGNFTYQGIYMMYRPP 60
           MKAKIEVLVFLGALILGILSLPPENSLTYDGALYIDIARNLAKDLGNFTYQGIYMMYRPP
Sbjct: 1   MKAKIEVLVFLGALILGILSLPPENSLTYDGALYIDIARNLAKDLGNFTYQGIYMMYRPP 60

Query: 61  LYPYTLSIPYRLVDSHHLIIARLVSVISFSLTAIIVYILGFKLFNSQLKGVIASLFYMLN 120
           LYPYTLSIPYRLVDSHHLIIARLVSVISFSLTAIIVYILGFKLFNSQLKGVIASLFYMLN
Sbjct: 61  LYPYTLSIPYRLVDSHHLIIARLVSVISFSLTAIIVYILGFKLFNSQLKGVIASLFYMLN 120

Query: 121 PLAFTMASRELVHSEFTLFYALALYLLYTGKIEKNRVKIYLAFISSGLAVLTRYTGLSII 180
           PLAFTMASRELVHSEFTLFYALALYLLYTGKIEKNRVKIYLAFISSGLAVLTRYTGLSII
Sbjct: 121 PLAFTMASRELVHSEFTLFYALALYLLYTGKIEKNRVKIYLAFISSGLAVLTRYTGLSII 180

Query: 181 LVIFAYLWLTEDWRWVKRKEYIIGFLLFILTLIPWLYMGHLHYGGALRPFKIASRVVTLD 240
           LVIFAYLWLTEDWRWVKRKEYIIGFLLFILTLIPWLYMGHLHYGGALRPFKIASRVVTLD
Sbjct: 181 LVIFAYLWLTEDWRWVKRKEYIIGFLLFILTLIPWLYMGHLHYGGALRPFKIASRVVTLD 240

Query: 241 KPVSAFDYLKMILKDIGYVLPGLAFLGFLRLKKDEKGWLMLSWLLIGGMGILSVTHKETR 300
           KPVSAFDYLKMILKDIGYVLPGLAFLGFLRLKKDEKGWLMLSWLLIGGMGILSVTHKETR
Sbjct: 241 KPVSAFDYLKMILKDIGYVLPGLAFLGFLRLKKDEKGWLMLSWLLIGGMGILSVTHKETR 300

Query: 301 FITFLSPVIALLATEGINLIEDSLPIPNTKKKGIIALVISFLLLIPIGIRAKNLRDSWST 360
           FITFLSPVIALLATEGINLIEDSLPIPNTKKKGIIALVISFLLLIPIGIRAKNLRDSWST
Sbjct: 301 FITFLSPVIALLATEGINLIEDSLPIPNTKKKGIIALVISFLLLIPIGIRAKNLRDSWST 360

Query: 361 IGIQEMEVLRYVSMNYGGEKIIVPPRLYTMAGYWYPDAKIDMILNREDIKEKLSSGYYDV 420
           IGIQEMEVLRYVSMNYGGEKIIVPPRLYTMAGYWYPDAKIDMILNREDIKEKLSSGYYDV
Sbjct: 361 IGIQEMEVLRYVSMNYGGEKIIVPPRLYTMAGYWYPDAKIDMILNREDIKEKLSSGYYDV 420

Query: 421 VICRNIDNLELSDDYQLIKEFYGRFKIYVNRKMLKK 456
           VICRNIDNLELSDDYQLIKEFYGRFKIYVNRKMLKK
Sbjct: 421 VICRNIDNLELSDDYQLIKEFYGRFKIYVNRKMLKK 456


>pir||H71228 hypothetical protein PH0090 - Pyrococcus horikoshii
           >gi|3256476|dbj|BAA29159.1| (AP000001) 462aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 462
           
 Score =  633 bits (1614), Expect = e-180
 Identities = 295/457 (64%), Positives = 385/457 (83%), Gaps = 6/457 (1%)

Query: 4   KIEVLVFLGALILGILSLPPENSLTYDGALYIDIARNLAKDLGNFTYQGIYMMYRPPLYP 63
           K+ +L+FLGAL +GI  LPPENSLTYDGALYI+IAR+L K + +FTYQGIYMMYRPPLYP
Sbjct: 8   KVPILIFLGALAIGIAFLPPENSLTYDGALYINIARSLTKSVTSFTYQGIYMMYRPPLYP 67

Query: 64  YTLSIPYRLVDSHHLIIARLVSVISFSLTAIIVYILGFKLFNSQLKGVIASLFYMLNPLA 123
           YTLSI +R+  S+HL+IARLVSV SF+LT+++VY+L  ++F   +KG+IASLFY+ NPLA
Sbjct: 68  YTLSIFFRVFSSNHLLIARLVSVFSFALTSVLVYLLTLEMFRDSVKGIIASLFYIFNPLA 127

Query: 124 FTMASRELVHSEFTLFYALALYLLYTGKIEKNRVKIYLAFISSGLAVLTRYTGLSIILVI 183
           FTMA RELVHSEFT FY LA+YLLYTGK+ K+  +IYL+FI++GLA+LTRYTGLSI+LV 
Sbjct: 128 FTMAGRELVHSEFTFFYTLAIYLLYTGKVRKSNTRIYLSFIAAGLAILTRYTGLSIVLVF 187

Query: 184 FAYLWLTEDWRWVKRKEYIIGFLLFILTLIPWLYMGHLHYGGALRPFKIASRVVTLDKPV 243
             YLWLTEDW WV+R+EY+IGF L  LTL+PWLYMGHL+YGG  RPFKIAS+VVTLD+PV
Sbjct: 188 LTYLWLTEDWNWVRRREYLIGFALLFLTLLPWLYMGHLYYGGFFRPFKIASKVVTLDRPV 247

Query: 244 SAFDYLKMILKDIGYVLPGLAFLGFLRLKKDEKGWLMLSWLLIGGMGILSVTHKETRFIT 303
           SAFD++KM++ D+G++LP LA LGF R+KKDE GWL+LSWL++GG GIL+VTHKE+RFIT
Sbjct: 248 SAFDFIKMVIGDMGFLLPALAVLGFFRVKKDENGWLILSWLVMGGGGILTVTHKESRFIT 307

Query: 304 FLSPVIALLATEGINLIEDSLPIPNTKKKGIIALVISFLLLIPIGIRAKNLRDSWSTIGI 363
           FLSPVIA+LA+EGI L+ +    P  ++  I+A++++ LLLIPIG++A NLRD WS +G+
Sbjct: 308 FLSPVIAILASEGIYLLSNL--TPRIRRNNIVAVILALLLLIPIGMKADNLRDRWSIVGV 365

Query: 364 QEMEVLRYVSMNYGGEKIIVPPRLYTMAGYWYPDAKIDMILNREDIKEKLSSGYYDVVIC 423
            +  V+RYVS +Y G+KI+V P LYT+AGY+YP+A+IDMILNR++I EK++ GYYDV+I 
Sbjct: 366 YDSNVVRYVSEHYDGKKILVSPYLYTIAGYYYPNAEIDMILNRKEIVEKIAKGYYDVIIH 425

Query: 424 RNID---NLELSDDYQLIKEFY-GRFKIYVNRKMLKK 456
           ++ +   N+E S +Y L+KEF+ GRFK+Y+NR+ L K
Sbjct: 426 KDPNVYLNIEESGNYVLVKEFHGGRFKVYINRRSLAK 462


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.328    0.146    0.437 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167967077
Number of Sequences: 2977
Number of extensions: 7157266
Number of successful extensions: 21728
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21723
Number of HSP's gapped (non-prelim): 2
length of query: 456
length of database: 189,106,746
effective HSP length: 52
effective length of query: 404
effective length of database: 157,985,422
effective search space: 63826110488
effective search space used: 63826110488
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 167 (69.5 bits)