BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0058 (PAB0058) DE:Hypothetical protein
         (248 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75196 hypothetical protein PAB0058 - Pyrococcus abyssi (st...   519  e-146
pir||C71229 hypothetical protein PH0093 - Pyrococcus horikoshii ...   363  e-100
pir||S74024 hypothetical protein c0206 - Sulfolobus solfataricus...    81  1e-14
gb|AAK42291.1| Conserved hypothetical protein [Sulfolobus solfat...    81  1e-14
gb|AAG18880.1| (AE004990) Vng0297h [Halobacterium sp. NRC-1]           73  4e-12
gb|AAK41438.1| Conserved hypothetical protein [Sulfolobus solfat...    71  2e-11

>pir||G75196 hypothetical protein PAB0058 - Pyrococcus abyssi (strain Orsay)
           >gi|5457531|emb|CAB49022.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 248
           
 Score =  519 bits (1323), Expect = e-146
 Identities = 248/248 (100%), Positives = 248/248 (100%)

Query: 1   MLWRTDVKLTGDNFKKIDFHAHIQSLGYPFNVEINVEEFLALMEAYNIEKAIISDLNNER 60
           MLWRTDVKLTGDNFKKIDFHAHIQSLGYPFNVEINVEEFLALMEAYNIEKAIISDLNNER
Sbjct: 1   MLWRTDVKLTGDNFKKIDFHAHIQSLGYPFNVEINVEEFLALMEAYNIEKAIISDLNNER 60

Query: 61  IAEITREYPDKFIGIAWVDPREKDIDKYFRFEFKGIKLHPLLHMFSPGDPVVERVMKIAR 120
           IAEITREYPDKFIGIAWVDPREKDIDKYFRFEFKGIKLHPLLHMFSPGDPVVERVMKIAR
Sbjct: 61  IAEITREYPDKFIGIAWVDPREKDIDKYFRFEFKGIKLHPLLHMFSPGDPVVERVMKIAR 120

Query: 121 DYGLPVFIHSGHPPTSLPWQIEDLARKFPDVPIVIIHMGHGNAFYIQGAIEIAERNENVY 180
           DYGLPVFIHSGHPPTSLPWQIEDLARKFPDVPIVIIHMGHGNAFYIQGAIEIAERNENVY
Sbjct: 121 DYGLPVFIHSGHPPTSLPWQIEDLARKFPDVPIVIIHMGHGNAFYIQGAIEIAERNENVY 180

Query: 181 LETSGMPMPAKIKQAYERTPDKVMFGTDLPCHHPVVEIAKVLTSGLDERGIKKVLYENAR 240
           LETSGMPMPAKIKQAYERTPDKVMFGTDLPCHHPVVEIAKVLTSGLDERGIKKVLYENAR
Sbjct: 181 LETSGMPMPAKIKQAYERTPDKVMFGTDLPCHHPVVEIAKVLTSGLDERGIKKVLYENAR 240

Query: 241 KFIERWMK 248
           KFIERWMK
Sbjct: 241 KFIERWMK 248


>pir||C71229 hypothetical protein PH0093 - Pyrococcus horikoshii
           >gi|3256479|dbj|BAA29162.1| (AP000001) 247aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 247
           
 Score =  363 bits (923), Expect = e-100
 Identities = 168/244 (68%), Positives = 208/244 (84%), Gaps = 5/244 (2%)

Query: 2   LWRTDVKLTGDNFKKIDFHAHIQSLGYPFNVEINVEEFLALMEAYNIEKAIISDLNNERI 61
           +WRTD+KL  D F+KID H+HIQ LGYPFNV I  EEFL+LMEAYNIE AIISD+NN+ I
Sbjct: 1   MWRTDIKLNADKFRKIDAHSHIQVLGYPFNVSITPEEFLSLMEAYNIEIAIISDVNNDNI 60

Query: 62  AEITREYPDKFIGIAWVDPREK----DIDKYF-RFEFKGIKLHPLLHMFSPGDPVVERVM 116
           A+I +EYPDK +GI W +PR++    + +K+  ++EF+GIKLHPLL+MFSP DP VE++M
Sbjct: 61  AKIVKEYPDKLVGIYWPNPRDEKSINETEKFLEKYEFRGIKLHPLLNMFSPSDPRVEKIM 120

Query: 117 KIARDYGLPVFIHSGHPPTSLPWQIEDLARKFPDVPIVIIHMGHGNAFYIQGAIEIAERN 176
           KIA ++ + V IHSGHPPTSLPWQIE+LARKFP+V IV++HMGHGNA+YIQGAIEIA RN
Sbjct: 121 KIAEEFNVHVQIHSGHPPTSLPWQIEELARKFPEVKIVMVHMGHGNAYYIQGAIEIAGRN 180

Query: 177 ENVYLETSGMPMPAKIKQAYERTPDKVMFGTDLPCHHPVVEIAKVLTSGLDERGIKKVLY 236
           EN+YLETSGMPMP+KI +AYE  P +V+FG DLPCHHPVVEIAKVL SGL+E+G+K+V Y
Sbjct: 181 ENIYLETSGMPMPSKIAEAYEVAPRRVVFGIDLPCHHPVVEIAKVLISGLNEKGMKRVFY 240

Query: 237 ENAR 240
           ENA+
Sbjct: 241 ENAK 244


>pir||S74024 hypothetical protein c0206 - Sulfolobus solfataricus
           >gi|1707718|emb|CAA69484.1| (Y08256) orf c02006
           [Sulfolobus solfataricus]
           Length = 269
           
 Score = 81.1 bits (197), Expect = 1e-14
 Identities = 70/270 (25%), Positives = 120/270 (43%), Gaps = 44/270 (16%)

Query: 17  IDFHAH---------IQSLGYP----FNVEINVE---EFLALMEAYNIEKAIISDLNN-- 58
           IDFH H         +   G P    FN ++ V+   E L   E++ I++ ++  +++  
Sbjct: 2   IDFHFHAPVKEFLDFLGEFGEPAIKYFNAKVEVKGLKETLDYYESFGIKRFVVLPIDSTT 61

Query: 59  ---ERIAEITREYPDKFIGIAWVDPREKDIDKYFR-----FEFKGIKLHPLLHMFSPGDP 110
               RI        D+ +    VDP + + D+  +     FE  G+KLHP L  F P D 
Sbjct: 62  FLGRRIPNQVINLDDRIVKFISVDPSKPNADEELKRSIKEFEPVGVKLHPQLQGFHPLDE 121

Query: 111 VVERVMKIARDYGLPVFIHSGHPPTSL------------PWQIEDLARKFPDVPIVIIHM 158
              ++ +I  ++GL V  H+G                  P   +++A +F ++ I++ H 
Sbjct: 122 RALKIYEIIDNHGLIVVFHTGTSGIGAGVKSSIRLDYGRPIYFDEIAVRFQNMKIILAHF 181

Query: 159 GHGNAFYIQGAIEIAERNENVYLETSGMP---MPAKIKQAYERTPDKVMFGTDLPCHHPV 215
           G     + + AI IA    NVYL+ SG     +P  I    +R  DK++FG+D P   P 
Sbjct: 182 GWP---WTEEAIAIALHKPNVYLDLSGWAPRYIPQVIWSNAKRLSDKLLFGSDFPLIRPE 238

Query: 216 VEIAKVLTSGLDERGIKKVLYENARKFIER 245
             + +  +  L +    K+L  NA K +++
Sbjct: 239 RWLEEFKSVNLSQDIKDKILKHNAEKLVKK 268


>gb|AAK42291.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 269
           
 Score = 81.1 bits (197), Expect = 1e-14
 Identities = 70/270 (25%), Positives = 120/270 (43%), Gaps = 44/270 (16%)

Query: 17  IDFHAH---------IQSLGYP----FNVEINVE---EFLALMEAYNIEKAIISDLNN-- 58
           IDFH H         +   G P    FN ++ V+   E L   E++ I++ ++  +++  
Sbjct: 2   IDFHFHAPVKEFLDFLGEFGEPAIKYFNAKVEVKGLKETLDYYESFGIKRFVVLPIDSTT 61

Query: 59  ---ERIAEITREYPDKFIGIAWVDPREKDIDKYFR-----FEFKGIKLHPLLHMFSPGDP 110
               RI        D+ +    VDP + + D+  +     FE  G+KLHP L  F P D 
Sbjct: 62  FLGRRIPNQVINLDDRIVKFISVDPSKPNADEELKRSIKEFEPVGVKLHPQLQGFHPLDE 121

Query: 111 VVERVMKIARDYGLPVFIHSGHPPTSL------------PWQIEDLARKFPDVPIVIIHM 158
              ++ +I  ++GL V  H+G                  P   +++A +F ++ I++ H 
Sbjct: 122 RALKIYEIIDNHGLIVVFHTGTSGIGAGVKSSIRLDYGRPIYFDEIAVRFQNMKIILAHF 181

Query: 159 GHGNAFYIQGAIEIAERNENVYLETSGMP---MPAKIKQAYERTPDKVMFGTDLPCHHPV 215
           G     + + AI IA    NVYL+ SG     +P  I    +R  DK++FG+D P   P 
Sbjct: 182 GWP---WTEEAIAIALHKPNVYLDLSGWAPRYIPQVIWSNAKRLSDKLLFGSDFPLIRPE 238

Query: 216 VEIAKVLTSGLDERGIKKVLYENARKFIER 245
             + +  +  L +    K+L  NA K +++
Sbjct: 239 RWLEEFKSVNLSQDIKDKILKHNAEKLVKK 268


>gb|AAG18880.1| (AE004990) Vng0297h [Halobacterium sp. NRC-1]
           Length = 272
           
 Score = 72.6 bits (175), Expect = 4e-12
 Identities = 49/164 (29%), Positives = 83/164 (49%), Gaps = 11/164 (6%)

Query: 83  KDIDKY-FRFEFKGIKLHPLLHMFSPGDPVVERVMKIARDYGLPVFIHSGHPPTSLPWQI 141
           +DI++Y +   F G KL P        D     V+ +  D GLPV +  G   T      
Sbjct: 111 EDIEQYAYDDRFHGFKLDPAQDGLPDAD-----VLDVLDDVGLPVLVDGGRQFTPAALAE 165

Query: 142 EDLARKFPDVPIVIIHMGHG--NAFYIQGAIEIAERNENVYLETSGMPMPAKIKQAYERT 199
             L R+FP   +V+ H G    +   +  A+E+ E +E++Y++T+G+     +++A    
Sbjct: 166 TLLDREFP---VVLGHFGGHPLDRELMTAAVELLESHESLYVDTAGVRYREILERAIREH 222

Query: 200 PDKVMFGTDLPCHHPVVEIAKVLTSGLDERGIKKVLYENARKFI 243
           PD+V+FG+  P  HP V + +VLT  + E  + KVL +N  + +
Sbjct: 223 PDRVVFGSGAPATHPNVSLMEVLTLDVTEDAMAKVLGQNLARIL 266


>gb|AAK41438.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 270
           
 Score = 70.6 bits (170), Expect = 2e-11
 Identities = 54/208 (25%), Positives = 98/208 (46%), Gaps = 34/208 (16%)

Query: 63  EITREYPDKFIGIAWVDPREKDIDKYFRFEFK----GIKLHPLLHMFSP--------GDP 110
           E  +  PD ++    V+P + D+ +    ++     GIKLHP+ H F P        G  
Sbjct: 69  EERKRNPDLYMQWGEVNPLKCDVKRELERQYSLGIIGIKLHPVHHTFKPNAYREEEGGLK 128

Query: 111 VVERVMKIARDYGLPVFIHSGHPPTSL----------PWQIEDLARKFPDVPIVIIHMGH 160
            +  + + A D+GLP+ IH+G   TS+          P   +D+A+ FP + I++ H   
Sbjct: 129 QLLYIYEFAEDHGLPILIHTG---TSIGVGSRNKYADPIYADDIAKDFPKLRIILAHA-- 183

Query: 161 GNAFYIQGAIEIAERNENVYLETSGMPMP--AKIKQAYERTPDKVMFGTDLPCH--HPVV 216
           G   +   A  +A   +N++LE S +P     K+        DKV++G+D P      + 
Sbjct: 184 GRPLWYNTAFHMARFTQNIFLEISSIPPKNILKVLPRIHEISDKVIYGSDFPAFKGQDLA 243

Query: 217 EIAKVLTSGLDERGIKKVLYENARKFIE 244
           E A  + + L     +K++ +NA++ ++
Sbjct: 244 EYAYQVYNVLKN---EKIMRDNAKRILK 268


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.142    0.436 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102340749
Number of Sequences: 2977
Number of extensions: 4504667
Number of successful extensions: 16373
Number of sequences better than 1.0e-10: 6
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 16364
Number of HSP's gapped (non-prelim): 6
length of query: 248
length of database: 189,106,746
effective HSP length: 50
effective length of query: 198
effective length of database: 159,182,396
effective search space: 31518114408
effective search space used: 31518114408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)