BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0058 (PAB0058) DE:Hypothetical protein
(248 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75196 hypothetical protein PAB0058 - Pyrococcus abyssi (st... 519 e-146
pir||C71229 hypothetical protein PH0093 - Pyrococcus horikoshii ... 363 e-100
pir||S74024 hypothetical protein c0206 - Sulfolobus solfataricus... 81 1e-14
gb|AAK42291.1| Conserved hypothetical protein [Sulfolobus solfat... 81 1e-14
gb|AAG18880.1| (AE004990) Vng0297h [Halobacterium sp. NRC-1] 73 4e-12
gb|AAK41438.1| Conserved hypothetical protein [Sulfolobus solfat... 71 2e-11
>pir||G75196 hypothetical protein PAB0058 - Pyrococcus abyssi (strain Orsay)
>gi|5457531|emb|CAB49022.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 248
Score = 519 bits (1323), Expect = e-146
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MLWRTDVKLTGDNFKKIDFHAHIQSLGYPFNVEINVEEFLALMEAYNIEKAIISDLNNER 60
MLWRTDVKLTGDNFKKIDFHAHIQSLGYPFNVEINVEEFLALMEAYNIEKAIISDLNNER
Sbjct: 1 MLWRTDVKLTGDNFKKIDFHAHIQSLGYPFNVEINVEEFLALMEAYNIEKAIISDLNNER 60
Query: 61 IAEITREYPDKFIGIAWVDPREKDIDKYFRFEFKGIKLHPLLHMFSPGDPVVERVMKIAR 120
IAEITREYPDKFIGIAWVDPREKDIDKYFRFEFKGIKLHPLLHMFSPGDPVVERVMKIAR
Sbjct: 61 IAEITREYPDKFIGIAWVDPREKDIDKYFRFEFKGIKLHPLLHMFSPGDPVVERVMKIAR 120
Query: 121 DYGLPVFIHSGHPPTSLPWQIEDLARKFPDVPIVIIHMGHGNAFYIQGAIEIAERNENVY 180
DYGLPVFIHSGHPPTSLPWQIEDLARKFPDVPIVIIHMGHGNAFYIQGAIEIAERNENVY
Sbjct: 121 DYGLPVFIHSGHPPTSLPWQIEDLARKFPDVPIVIIHMGHGNAFYIQGAIEIAERNENVY 180
Query: 181 LETSGMPMPAKIKQAYERTPDKVMFGTDLPCHHPVVEIAKVLTSGLDERGIKKVLYENAR 240
LETSGMPMPAKIKQAYERTPDKVMFGTDLPCHHPVVEIAKVLTSGLDERGIKKVLYENAR
Sbjct: 181 LETSGMPMPAKIKQAYERTPDKVMFGTDLPCHHPVVEIAKVLTSGLDERGIKKVLYENAR 240
Query: 241 KFIERWMK 248
KFIERWMK
Sbjct: 241 KFIERWMK 248
>pir||C71229 hypothetical protein PH0093 - Pyrococcus horikoshii
>gi|3256479|dbj|BAA29162.1| (AP000001) 247aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 247
Score = 363 bits (923), Expect = e-100
Identities = 168/244 (68%), Positives = 208/244 (84%), Gaps = 5/244 (2%)
Query: 2 LWRTDVKLTGDNFKKIDFHAHIQSLGYPFNVEINVEEFLALMEAYNIEKAIISDLNNERI 61
+WRTD+KL D F+KID H+HIQ LGYPFNV I EEFL+LMEAYNIE AIISD+NN+ I
Sbjct: 1 MWRTDIKLNADKFRKIDAHSHIQVLGYPFNVSITPEEFLSLMEAYNIEIAIISDVNNDNI 60
Query: 62 AEITREYPDKFIGIAWVDPREK----DIDKYF-RFEFKGIKLHPLLHMFSPGDPVVERVM 116
A+I +EYPDK +GI W +PR++ + +K+ ++EF+GIKLHPLL+MFSP DP VE++M
Sbjct: 61 AKIVKEYPDKLVGIYWPNPRDEKSINETEKFLEKYEFRGIKLHPLLNMFSPSDPRVEKIM 120
Query: 117 KIARDYGLPVFIHSGHPPTSLPWQIEDLARKFPDVPIVIIHMGHGNAFYIQGAIEIAERN 176
KIA ++ + V IHSGHPPTSLPWQIE+LARKFP+V IV++HMGHGNA+YIQGAIEIA RN
Sbjct: 121 KIAEEFNVHVQIHSGHPPTSLPWQIEELARKFPEVKIVMVHMGHGNAYYIQGAIEIAGRN 180
Query: 177 ENVYLETSGMPMPAKIKQAYERTPDKVMFGTDLPCHHPVVEIAKVLTSGLDERGIKKVLY 236
EN+YLETSGMPMP+KI +AYE P +V+FG DLPCHHPVVEIAKVL SGL+E+G+K+V Y
Sbjct: 181 ENIYLETSGMPMPSKIAEAYEVAPRRVVFGIDLPCHHPVVEIAKVLISGLNEKGMKRVFY 240
Query: 237 ENAR 240
ENA+
Sbjct: 241 ENAK 244
>pir||S74024 hypothetical protein c0206 - Sulfolobus solfataricus
>gi|1707718|emb|CAA69484.1| (Y08256) orf c02006
[Sulfolobus solfataricus]
Length = 269
Score = 81.1 bits (197), Expect = 1e-14
Identities = 70/270 (25%), Positives = 120/270 (43%), Gaps = 44/270 (16%)
Query: 17 IDFHAH---------IQSLGYP----FNVEINVE---EFLALMEAYNIEKAIISDLNN-- 58
IDFH H + G P FN ++ V+ E L E++ I++ ++ +++
Sbjct: 2 IDFHFHAPVKEFLDFLGEFGEPAIKYFNAKVEVKGLKETLDYYESFGIKRFVVLPIDSTT 61
Query: 59 ---ERIAEITREYPDKFIGIAWVDPREKDIDKYFR-----FEFKGIKLHPLLHMFSPGDP 110
RI D+ + VDP + + D+ + FE G+KLHP L F P D
Sbjct: 62 FLGRRIPNQVINLDDRIVKFISVDPSKPNADEELKRSIKEFEPVGVKLHPQLQGFHPLDE 121
Query: 111 VVERVMKIARDYGLPVFIHSGHPPTSL------------PWQIEDLARKFPDVPIVIIHM 158
++ +I ++GL V H+G P +++A +F ++ I++ H
Sbjct: 122 RALKIYEIIDNHGLIVVFHTGTSGIGAGVKSSIRLDYGRPIYFDEIAVRFQNMKIILAHF 181
Query: 159 GHGNAFYIQGAIEIAERNENVYLETSGMP---MPAKIKQAYERTPDKVMFGTDLPCHHPV 215
G + + AI IA NVYL+ SG +P I +R DK++FG+D P P
Sbjct: 182 GWP---WTEEAIAIALHKPNVYLDLSGWAPRYIPQVIWSNAKRLSDKLLFGSDFPLIRPE 238
Query: 216 VEIAKVLTSGLDERGIKKVLYENARKFIER 245
+ + + L + K+L NA K +++
Sbjct: 239 RWLEEFKSVNLSQDIKDKILKHNAEKLVKK 268
>gb|AAK42291.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 269
Score = 81.1 bits (197), Expect = 1e-14
Identities = 70/270 (25%), Positives = 120/270 (43%), Gaps = 44/270 (16%)
Query: 17 IDFHAH---------IQSLGYP----FNVEINVE---EFLALMEAYNIEKAIISDLNN-- 58
IDFH H + G P FN ++ V+ E L E++ I++ ++ +++
Sbjct: 2 IDFHFHAPVKEFLDFLGEFGEPAIKYFNAKVEVKGLKETLDYYESFGIKRFVVLPIDSTT 61
Query: 59 ---ERIAEITREYPDKFIGIAWVDPREKDIDKYFR-----FEFKGIKLHPLLHMFSPGDP 110
RI D+ + VDP + + D+ + FE G+KLHP L F P D
Sbjct: 62 FLGRRIPNQVINLDDRIVKFISVDPSKPNADEELKRSIKEFEPVGVKLHPQLQGFHPLDE 121
Query: 111 VVERVMKIARDYGLPVFIHSGHPPTSL------------PWQIEDLARKFPDVPIVIIHM 158
++ +I ++GL V H+G P +++A +F ++ I++ H
Sbjct: 122 RALKIYEIIDNHGLIVVFHTGTSGIGAGVKSSIRLDYGRPIYFDEIAVRFQNMKIILAHF 181
Query: 159 GHGNAFYIQGAIEIAERNENVYLETSGMP---MPAKIKQAYERTPDKVMFGTDLPCHHPV 215
G + + AI IA NVYL+ SG +P I +R DK++FG+D P P
Sbjct: 182 GWP---WTEEAIAIALHKPNVYLDLSGWAPRYIPQVIWSNAKRLSDKLLFGSDFPLIRPE 238
Query: 216 VEIAKVLTSGLDERGIKKVLYENARKFIER 245
+ + + L + K+L NA K +++
Sbjct: 239 RWLEEFKSVNLSQDIKDKILKHNAEKLVKK 268
>gb|AAG18880.1| (AE004990) Vng0297h [Halobacterium sp. NRC-1]
Length = 272
Score = 72.6 bits (175), Expect = 4e-12
Identities = 49/164 (29%), Positives = 83/164 (49%), Gaps = 11/164 (6%)
Query: 83 KDIDKY-FRFEFKGIKLHPLLHMFSPGDPVVERVMKIARDYGLPVFIHSGHPPTSLPWQI 141
+DI++Y + F G KL P D V+ + D GLPV + G T
Sbjct: 111 EDIEQYAYDDRFHGFKLDPAQDGLPDAD-----VLDVLDDVGLPVLVDGGRQFTPAALAE 165
Query: 142 EDLARKFPDVPIVIIHMGHG--NAFYIQGAIEIAERNENVYLETSGMPMPAKIKQAYERT 199
L R+FP +V+ H G + + A+E+ E +E++Y++T+G+ +++A
Sbjct: 166 TLLDREFP---VVLGHFGGHPLDRELMTAAVELLESHESLYVDTAGVRYREILERAIREH 222
Query: 200 PDKVMFGTDLPCHHPVVEIAKVLTSGLDERGIKKVLYENARKFI 243
PD+V+FG+ P HP V + +VLT + E + KVL +N + +
Sbjct: 223 PDRVVFGSGAPATHPNVSLMEVLTLDVTEDAMAKVLGQNLARIL 266
>gb|AAK41438.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 270
Score = 70.6 bits (170), Expect = 2e-11
Identities = 54/208 (25%), Positives = 98/208 (46%), Gaps = 34/208 (16%)
Query: 63 EITREYPDKFIGIAWVDPREKDIDKYFRFEFK----GIKLHPLLHMFSP--------GDP 110
E + PD ++ V+P + D+ + ++ GIKLHP+ H F P G
Sbjct: 69 EERKRNPDLYMQWGEVNPLKCDVKRELERQYSLGIIGIKLHPVHHTFKPNAYREEEGGLK 128
Query: 111 VVERVMKIARDYGLPVFIHSGHPPTSL----------PWQIEDLARKFPDVPIVIIHMGH 160
+ + + A D+GLP+ IH+G TS+ P +D+A+ FP + I++ H
Sbjct: 129 QLLYIYEFAEDHGLPILIHTG---TSIGVGSRNKYADPIYADDIAKDFPKLRIILAHA-- 183
Query: 161 GNAFYIQGAIEIAERNENVYLETSGMPMP--AKIKQAYERTPDKVMFGTDLPCH--HPVV 216
G + A +A +N++LE S +P K+ DKV++G+D P +
Sbjct: 184 GRPLWYNTAFHMARFTQNIFLEISSIPPKNILKVLPRIHEISDKVIYGSDFPAFKGQDLA 243
Query: 217 EIAKVLTSGLDERGIKKVLYENARKFIE 244
E A + + L +K++ +NA++ ++
Sbjct: 244 EYAYQVYNVLKN---EKIMRDNAKRILK 268
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.142 0.436
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102340749
Number of Sequences: 2977
Number of extensions: 4504667
Number of successful extensions: 16373
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 16364
Number of HSP's gapped (non-prelim): 6
length of query: 248
length of database: 189,106,746
effective HSP length: 50
effective length of query: 198
effective length of database: 159,182,396
effective search space: 31518114408
effective search space used: 31518114408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)