BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0062 (PAB0062) DE:conserved hypothetical protein
(184 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75197 conserved hypothetical protein PAB0062 - Pyrococcus ... 362 1e-99
sp|O57823|Y099_PYRHO HYPOTHETICAL PROTEIN PH0099 >gi|7446643|pir... 291 3e-78
sp|O26683|Y583_METTH HYPOTHETICAL PROTEIN MTH583 >gi|7446637|pir... 172 3e-42
sp|Q58963|YF68_METJA HYPOTHETICAL PROTEIN MJ1568 >gi|2128944|pir... 165 3e-40
gi|11499740 conserved hypothetical protein [Archaeoglobus fulgid... 139 2e-32
sp|Q9X2H4|YI60_THEMA HYPOTHETICAL PROTEIN TM1860 >gi|7446644|pir... 131 4e-30
gb|AAK41302.1| Conserved hypothetical protein [Sulfolobus solfat... 127 1e-28
sp|Q9YB03|YH92_AERPE HYPOTHETICAL PROTEIN APE1792 >gi|7446641|pi... 126 1e-28
sp|O66967|Y768_AQUAE HYPOTHETICAL PROTEIN AQ_768 >gi|7446639|pir... 114 8e-25
sp|Q45633|YMA3_BACST HYPOTHETICAL 35.7 KDA PROTEIN IN MALA 3'REG... 76 2e-13
emb|CAC11169.1| (AL445063) conserved hypothetical protein [Therm... 76 2e-13
>pir||C75197 conserved hypothetical protein PAB0062 - Pyrococcus abyssi (strain
Orsay) >gi|5457535|emb|CAB49026.1| (AJ248283) conserved
hypothetical protein [Pyrococcus abyssi]
Length = 184
Score = 362 bits (920), Expect = 1e-99
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MRAFIAIDVSEEVRDSLIKAQEFIGTRDAKIKFVERENLHITLKFLGEIDEATAQEIKEI 60
MRAFIAIDVSEEVRDSLIKAQEFIGTRDAKIKFVERENLHITLKFLGEIDEATAQEIKEI
Sbjct: 1 MRAFIAIDVSEEVRDSLIKAQEFIGTRDAKIKFVERENLHITLKFLGEIDEATAQEIKEI 60
Query: 61 LAEIAKRHKKHEVRVKGIGVFPNPNYIRVIWAGVENDEEIRKIAEEIDKALSKLGFKREE 120
LAEIAKRHKKHEVRVKGIGVFPNPNYIRVIWAGVENDEEIRKIAEEIDKALSKLGFKREE
Sbjct: 61 LAEIAKRHKKHEVRVKGIGVFPNPNYIRVIWAGVENDEEIRKIAEEIDKALSKLGFKREE 120
Query: 121 KFIPHVTIGRVKFVKDKLGLAEKLRELSNEDFGTFRVEAIELKKSTLTPKGPIYETLARF 180
KFIPHVTIGRVKFVKDKLGLAEKLRELSNEDFGTFRVEAIELKKSTLTPKGPIYETLARF
Sbjct: 121 KFIPHVTIGRVKFVKDKLGLAEKLRELSNEDFGTFRVEAIELKKSTLTPKGPIYETLARF 180
Query: 181 ELSD 184
ELSD
Sbjct: 181 ELSD 184
>sp|O57823|Y099_PYRHO HYPOTHETICAL PROTEIN PH0099 >gi|7446643|pir||A71230 hypothetical
protein PH0099 - Pyrococcus horikoshii
>gi|3256485|dbj|BAA29168.1| (AP000001) 184aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 184
Score = 291 bits (738), Expect = 3e-78
Identities = 140/184 (76%), Positives = 168/184 (91%)
Query: 1 MRAFIAIDVSEEVRDSLIKAQEFIGTRDAKIKFVERENLHITLKFLGEIDEATAQEIKEI 60
MRAFIAIDV+E VRDSL++AQ++IG+++AKIKFVERENLHITLKFLGEI E A+EIK I
Sbjct: 1 MRAFIAIDVNESVRDSLVRAQDYIGSKEAKIKFVERENLHITLKFLGEITEEQAEEIKNI 60
Query: 61 LAEIAKRHKKHEVRVKGIGVFPNPNYIRVIWAGVENDEEIRKIAEEIDKALSKLGFKREE 120
L +IA+++KKHEV+VKGIGVFPNPNYIRVIWAG+ENDE IR++A EI+ L+KLGFK+E
Sbjct: 61 LKKIAEKYKKHEVKVKGIGVFPNPNYIRVIWAGIENDEIIREMAREIEDELAKLGFKKEG 120
Query: 121 KFIPHVTIGRVKFVKDKLGLAEKLRELSNEDFGTFRVEAIELKKSTLTPKGPIYETLARF 180
F+ H+T+GRVKFVKDKLGL KL+EL+NEDFG+F V+AIELKKSTLTPKGPIYETLARF
Sbjct: 121 NFVAHITLGRVKFVKDKLGLTMKLKELANEDFGSFVVDAIELKKSTLTPKGPIYETLARF 180
Query: 181 ELSD 184
ELS+
Sbjct: 181 ELSE 184
>sp|O26683|Y583_METTH HYPOTHETICAL PROTEIN MTH583 >gi|7446637|pir||C69177 conserved
hypothetical protein MTH583 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621661|gb|AAB85089.1| (AE000840) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 184
Score = 172 bits (431), Expect = 3e-42
Identities = 77/182 (42%), Positives = 120/182 (65%)
Query: 1 MRAFIAIDVSEEVRDSLIKAQEFIGTRDAKIKFVERENLHITLKFLGEIDEATAQEIKEI 60
+RAF+A+D+ E +RD + + Q+ + + DA++KFVE ENLH TLKF G++ E + I+ +
Sbjct: 3 VRAFLAVDLDEGLRDHVSRIQDTLKSADAQVKFVEPENLHFTLKFFGDVGEGKLRRIENV 62
Query: 61 LAEIAKRHKKHEVRVKGIGVFPNPNYIRVIWAGVENDEEIRKIAEEIDKALSKLGFKREE 120
+ + + ++ E+ ++G GVFPNP YIRV+W GVEN E + +D K+GF+ E
Sbjct: 63 VRDTLRGYEPFEISIRGAGVFPNPRYIRVVWLGVENPETFSDLQRSLDMEFVKMGFRPER 122
Query: 121 KFIPHVTIGRVKFVKDKLGLAEKLRELSNEDFGTFRVEAIELKKSTLTPKGPIYETLARF 180
++PH+T+GRVK +++ LAE + EL N + G+ RV + LK+S LTP GPIY + F
Sbjct: 123 DYVPHLTVGRVKGPRNRDKLAELIGELQNVEVGSMRVSEVSLKRSELTPAGPIYTDMEVF 182
Query: 181 EL 182
L
Sbjct: 183 RL 184
>sp|Q58963|YF68_METJA HYPOTHETICAL PROTEIN MJ1568 >gi|2128944|pir||G64495 hypothetical
protein MJ1568 - Methanococcus jannaschii
>gi|1592190|gb|AAB99586.1| (U67597) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 173
Score = 165 bits (413), Expect = 3e-40
Identities = 84/177 (47%), Positives = 121/177 (67%), Gaps = 7/177 (3%)
Query: 1 MRAFIAIDVSEEVRDSLIKAQEFIGTRDAKIKFVERENLHITLKFLGEIDEATAQEIKEI 60
MR F+AID+ E +++ + K QE + IK VE+ENLHIT+KFLGE+DE +EI +
Sbjct: 1 MRLFLAIDIPENIKEEIAKFQEQFKMKG--IKLVEKENLHITVKFLGEVDEEKLKEILNL 58
Query: 61 LAEIAKRHKKHEVRVKGIGVFPNPNYIRVIWAGVENDEEIRKIAEEIDKALSKLGFKREE 120
I + ++++K IG FPN NYIRVIW G N+ + +I +EID+ LS LGFK+E
Sbjct: 59 DLSI----QPIKIKLKYIGTFPNSNYIRVIWIGAYNNNLV-EIFKEIDEKLSNLGFKKER 113
Query: 121 KFIPHVTIGRVKFVKDKLGLAEKLRELSNEDFGTFRVEAIELKKSTLTPKGPIYETL 177
+++PH+TIGRVKF+ +K L +++ + + DFG F + I+L KSTLTP GPIYE +
Sbjct: 114 EYVPHLTIGRVKFIDNKKKLKDRIEKYKDVDFGEFEAKHIKLYKSTLTPNGPIYEVI 170
>gi|11499740 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3183450|sp|O28125|YL57_ARCFU HYPOTHETICAL PROTEIN
AF2157 >gi|7446638|pir||E69519 conserved hypothetical
protein AF2157 - Archaeoglobus fulgidus
>gi|2648357|gb|AAB89083.1| (AE000955) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 176
Score = 139 bits (347), Expect = 2e-32
Identities = 75/182 (41%), Positives = 114/182 (62%), Gaps = 7/182 (3%)
Query: 1 MRAFIAIDVSEEVRDSLIKA-QEFIGTRDAKIKFVERENLHITLKFLGEIDEATAQEIKE 59
MR F+A+DV + +R+ + +E G + +K VE ENLHITL FLGE+ E I+E
Sbjct: 1 MRLFVAVDVDDSIREKVKPILKELSGV--SGVKAVEPENLHITLLFLGEVGEEKLARIEE 58
Query: 60 ILAEIAKRHKKHEVRVKGIGVFPNPNYIRVIWAGVENDEEIRKIAEEIDKALSKLGFKRE 119
L+E+ + ++ +G+G FPNP RV+W GV+ + E+ ++A + + L KLGF+R+
Sbjct: 59 RLSEVT--FQPFKISFEGVGAFPNPGSPRVVWIGVKEEGELTRLANSVYEKLKKLGFRRD 116
Query: 120 EKFIPHVTIGRVKFVKDKLGLAEKLRELSNEDFGTFRVEAIELKKSTLTPKGPIYETLAR 179
+ F H+T+GRVK + +A+ +R+ S+E FG V LK+S LTPKGPIY+ L
Sbjct: 117 KDFKAHLTVGRVK--RKNPEVADIVRKYSSESFGEMEVRDFRLKQSILTPKGPIYKDLRV 174
Query: 180 FE 181
FE
Sbjct: 175 FE 176
>sp|Q9X2H4|YI60_THEMA HYPOTHETICAL PROTEIN TM1860 >gi|7446644|pir||E72201 conserved
hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982445|gb|AAD36922.1|AE001823_4 (AE001823)
conserved hypothetical protein [Thermotoga maritima]
Length = 187
Score = 131 bits (327), Expect = 4e-30
Identities = 78/179 (43%), Positives = 100/179 (55%), Gaps = 7/179 (3%)
Query: 1 MRAFIAIDVSEEVRDSLIKAQEFIGTRDAKIKFVERENLHITLKFLGEIDEATAQEIKEI 60
MR FIAIDV+EEV+ + E + R +V EN+H+TL FLGE+DE EI E
Sbjct: 1 MRTFIAIDVNEEVKKQASEIIEKLMKRGFGATWVSEENMHLTLFFLGEVDEQKISEIAEH 60
Query: 61 LAEIAKRHKKHEVRVKGIGVFPNPNYIRVIWAGVENDEEIRKIAEEIDKALSKLGFKREE 120
L + VKG G F RV W GVEN + + K+ EE+ LS GF EE
Sbjct: 61 LCRRVRGFPSFSFTVKGFGYFKRKMSPRVFWLGVENTDRLMKLYEELRNELSHHGFSFEE 120
Query: 121 KFIPHVTIGRVKFVKDKLGLAEKLRELSNEDFGTFR--VEAIELKKSTLTPKGPIYETL 177
KF+PH+TIGRVK+ DK EKL + + DF V+ ++ STLTP GPIY+ L
Sbjct: 121 KFVPHITIGRVKYYPDKW---EKL--IEDIDFPPIEVAVDRFKIYSSTLTPTGPIYKVL 174
>gb|AAK41302.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 194
Score = 127 bits (315), Expect = 1e-28
Identities = 78/186 (41%), Positives = 108/186 (57%), Gaps = 9/186 (4%)
Query: 1 MRAFIAIDVSEEVRDSLIKAQEFIGTRDAKIKFVERENLHITLKFLGEIDEATAQEIKEI 60
MR FI I+V + + L++ E + A IK VE N+HITL FLGE+ E +E+K+
Sbjct: 1 MRLFIGIEVPQSPK--LLEIFEIVKNAGADIKLVEPYNIHITLLFLGEVREDRVEEVKDS 58
Query: 61 LAEIAKRHKKHEVRVKGIGVFPNPNYIRVIWAG-VENDEEIRKIAEEIDKALSKLGFKRE 119
++ + + K +V +KG+G FPN RV+W G VE +++R+I I L K + E
Sbjct: 59 MSGL--KFNKFKVTLKGLGAFPNLTRPRVVWVGIVEGQQQLRQIRSYILNELLKRKIRPE 116
Query: 120 EK--FIPHVTIGRVKFVKDKLGLAEKLRELSNEDFGTFRVEAIELKKSTLTPKGPIYETL 177
+ F PH+TIGRVK L + E N D GTF V + L KSTLTPKGPIY+ L
Sbjct: 117 DDKDFSPHLTIGRVKSYNSISNLINTINENMNVDIGTFEVNNVVLFKSTLTPKGPIYDKL 176
Query: 178 ARFELS 183
FE+S
Sbjct: 177 --FEVS 180
>sp|Q9YB03|YH92_AERPE HYPOTHETICAL PROTEIN APE1792 >gi|7446641|pir||F72563 hypothetical
protein APE1792 - Aeropyrum pernix (strain K1)
>gi|5105482|dbj|BAA80795.1| (AP000062) 176aa long
hypothetical protein [Aeropyrum pernix]
Length = 176
Score = 126 bits (314), Expect = 1e-28
Identities = 66/163 (40%), Positives = 104/163 (63%), Gaps = 4/163 (2%)
Query: 17 LIKAQEFIGTRDAKIKFVERENLHITLKFLGEIDEATAQEIKEILAEIAKRHKKHEVRVK 76
L + ++ I +K VE EN HITL+F+GE+ E A EI E LA I R ++ + ++
Sbjct: 5 LARLRDSIAHTGVPMKTVEDENFHITLRFIGEVSEPVAAEIGERLASI--RFERFRIELR 62
Query: 77 GIGVFPNPNYIRVIWAGVENDE-EIRKIAEEIDKALSKLGFKRE-EKFIPHVTIGRVKFV 134
G+G FP P+ RV+W GV E+R+I +E+++ L+ +GF E ++F PHVT+ R+K
Sbjct: 63 GLGAFPRPDRPRVVWVGVGGGAGELRRIRDEVERILTSMGFSPEKQEFHPHVTLARIKGA 122
Query: 135 KDKLGLAEKLRELSNEDFGTFRVEAIELKKSTLTPKGPIYETL 177
++ L + LRE+ + + G+ V +I LK+S LT +GPIY+TL
Sbjct: 123 RNLPALVKLLREMGDVEVGSVEVSSIRLKQSILTRQGPIYKTL 165
>sp|O66967|Y768_AQUAE HYPOTHETICAL PROTEIN AQ_768 >gi|7446639|pir||D70367 conserved
hypothetical protein aq_768 - Aquifex aeolicus
>gi|2983341|gb|AAC06930.1| (AE000706) hypothetical
protein [Aquifex aeolicus]
Length = 188
Score = 114 bits (282), Expect = 8e-25
Identities = 71/187 (37%), Positives = 110/187 (57%), Gaps = 9/187 (4%)
Query: 1 MRAFIAIDVSEEVRDSLIKAQEFIGTRDAKI--KFVERENLHITLKFLGEIDEATAQEIK 58
+RAF+ S+ + + + ++ + D KI K+VE +N+H+TL+FLG+I EA A E+
Sbjct: 4 VRAFVGFFTSKSINEVAERIKKEV---DLKIMGKWVEPQNVHMTLQFLGDITEAQAIEVI 60
Query: 59 EILAEIAKRHKKHEVRVKGIGVFPNPNYIRVIWAGV-ENDEEIRKIAEEIDKALSKLGF- 116
+ L EI+K++ ++ KG+GVFP+ RV+W GV E ++ +A+E+ + +K G
Sbjct: 61 KNLQEISKKNIPFRIKYKGLGVFPDVKRPRVLWIGVSEGANKLTNLAKEVARLNAKKGII 120
Query: 117 -KREEKFIPHVTIGRVKFVKDKLGLAEKLRELSNEDFGTFRVEAIELKKSTLTPKGPIYE 175
K + F+PHVTI R+K D+ L E LR+ +FG V I L STLT GPIY
Sbjct: 121 PKNSKNFVPHVTICRIKSY-DRKTLNELLRKYRTVEFGEDEVNKIALISSTLTSVGPIYT 179
Query: 176 TLARFEL 182
+ F L
Sbjct: 180 VVEEFYL 186
>sp|Q45633|YMA3_BACST HYPOTHETICAL 35.7 KDA PROTEIN IN MALA 3'REGION (ORF3)
>gi|1075814|pir||S43916 hypothetical protein 3 -
Bacillus stearothermophilus >gi|436967|gb|AAA71981.1|
(L13418) [malA] gene products [Bacillus
stearothermophilus]
Length = 314
Score = 76.5 bits (185), Expect = 2e-13
Identities = 53/183 (28%), Positives = 90/183 (48%), Gaps = 10/183 (5%)
Query: 4 FIAIDVSEEVRDSLIKAQEFIGTRDAKIKF---VERENLHITLKFLGEIDEATAQEIKEI 60
FIA+ ++ E + ++ + F G + + F V E+ HITL FLG++ + E
Sbjct: 7 FIAVPLTSEAKQAISR---FSGDASSSLPFRTWVHEEDYHITLAFLGDVPPGKMAPLCEA 63
Query: 61 LAEIAKRHKKHEVRVKGIGVFPNPNYIRVIWAGVENDEEIRKIAEEIDKALSKLGFKREE 120
+A +A + + + G+G F R+ W GV+ + + ++ ++ +A LGF +
Sbjct: 64 MAAVAAKSAPFSLALAGLGTFGERTAPRIFWQGVKEEAALNELRRDVYEACLSLGFSLDR 123
Query: 121 K-FIPHVTIGRVKFVKDKLGLAEKLRELSNEDFGTFRVEAIELKKSTLTPKGPIYETLAR 179
+ F PH+TI R K+ + E LR L F V I L ++ + K P YET+A
Sbjct: 124 RPFAPHITIAR-KWQGEAPFQPEALRSLPAAS-TVFSVPEIVLYRTNM-EKTPKYETIAA 180
Query: 180 FEL 182
F L
Sbjct: 181 FPL 183
>emb|CAC11169.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 172
Score = 76.1 bits (184), Expect = 2e-13
Identities = 62/174 (35%), Positives = 88/174 (49%), Gaps = 19/174 (10%)
Query: 1 MRAFIAIDVSEEVRDSLIKAQEFIGTRDAKIKFVERENLHITLKFLGEIDEATAQEIKEI 60
MRAFIA+ + D L G+ IK E N+H+T+KFLG+ID+ A EI
Sbjct: 1 MRAFIAVQIKPS--DYLANVFRIFGSIKG-IKVTEYGNVHLTIKFLGDIDDGKASEICRG 57
Query: 61 LAEIAKRHKKHEVRVKGIGVFPNPNYIRVIWAGVENDEEIRKIAEEIDKALSKLGFKREE 120
++ I + +GIG FP+ RVI+ +D R +A E+ K + E+
Sbjct: 58 ISGI--EASSFYLETEGIGAFPSLARPRVIYVECRSDGLYRLLA-EVGKFV-----PIEK 109
Query: 121 KFIPHVTIGRVKFVKDKLGLAEKLRELSNEDFGTFRVEAIELKKSTLTPKGPIY 174
FIPH+TIGR VK K+ + + E E + V+ + L KS L P GPIY
Sbjct: 110 DFIPHITIGR---VKHKIAMPD--IEFKKEKYS---VDEVCLFKSELKPSGPIY 155
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.378
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61098869
Number of Sequences: 2977
Number of extensions: 2429415
Number of successful extensions: 8903
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8880
Number of HSP's gapped (non-prelim): 11
length of query: 184
length of database: 189,106,746
effective HSP length: 57
effective length of query: 127
effective length of database: 154,992,987
effective search space: 19684109349
effective search space used: 19684109349
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)