BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0064 (PAB0064) DE:Hypothetical protein
         (286 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75197 hypothetical protein PAB0064 - Pyrococcus abyssi (st...   565  e-160
pir||E71230 hypothetical protein PH0103 - Pyrococcus horikoshii ...   377  e-104
pir||G72637 hypothetical protein APE1558 - Aeropyrum pernix (str...    72  9e-12

>pir||F75197 hypothetical protein PAB0064 - Pyrococcus abyssi (strain Orsay)
           >gi|5457538|emb|CAB49029.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 286
           
 Score =  565 bits (1441), Expect = e-160
 Identities = 286/286 (100%), Positives = 286/286 (100%)

Query: 1   MMIEIIKDIQRKLRNHREVYISNEEAVKQHIILPILSSLGWKIDDPEEVRPEEKTSEGRA 60
           MMIEIIKDIQRKLRNHREVYISNEEAVKQHIILPILSSLGWKIDDPEEVRPEEKTSEGRA
Sbjct: 1   MMIEIIKDIQRKLRNHREVYISNEEAVKQHIILPILSSLGWKIDDPEEVRPEEKTSEGRA 60

Query: 61  DYALIKDGKVVAFIEAKNLSVNPAKAVQQLAKYCFDMGVEVGIVSNGRVWLIVKAFEPGK 120
           DYALIKDGKVVAFIEAKNLSVNPAKAVQQLAKYCFDMGVEVGIVSNGRVWLIVKAFEPGK
Sbjct: 61  DYALIKDGKVVAFIEAKNLSVNPAKAVQQLAKYCFDMGVEVGIVSNGRVWLIVKAFEPGK 120

Query: 121 EAKDRVITTIDIVEEPPERIIVKLSCLKKDRIEKAIEICEVLNSLDNNVKRLKAFGISEG 180
           EAKDRVITTIDIVEEPPERIIVKLSCLKKDRIEKAIEICEVLNSLDNNVKRLKAFGISEG
Sbjct: 121 EAKDRVITTIDIVEEPPERIIVKLSCLKKDRIEKAIEICEVLNSLDNNVKRLKAFGISEG 180

Query: 181 DVANYILTISIRRAYPPEISHPSDKITGVYIFHEGKWRYLPIPHGTLKDALMALMSYLSE 240
           DVANYILTISIRRAYPPEISHPSDKITGVYIFHEGKWRYLPIPHGTLKDALMALMSYLSE
Sbjct: 181 DVANYILTISIRRAYPPEISHPSDKITGVYIFHEGKWRYLPIPHGTLKDALMALMSYLSE 240

Query: 241 YEDEEERKIIKRAIAEISMRNISGEKIIALIKAIEKEKNIKVLIAL 286
           YEDEEERKIIKRAIAEISMRNISGEKIIALIKAIEKEKNIKVLIAL
Sbjct: 241 YEDEEERKIIKRAIAEISMRNISGEKIIALIKAIEKEKNIKVLIAL 286


>pir||E71230 hypothetical protein PH0103 - Pyrococcus horikoshii
           >gi|3256489|dbj|BAA29172.1| (AP000001) 266aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 266
           
 Score =  377 bits (958), Expect = e-104
 Identities = 178/267 (66%), Positives = 227/267 (84%), Gaps = 2/267 (0%)

Query: 21  ISNEEAVKQHIILPILSSLGWKIDDPEEVRPEEKTSEGRADYALIKDGKVVAFIEAKNLS 80
           ++NEEAVKQH+ILP LS+LGWK+DDP+EVRPEEKT EGRADYALIKDG++VAF+EAKNLS
Sbjct: 1   MANEEAVKQHLILPTLSALGWKVDDPKEVRPEEKTEEGRADYALIKDGRIVAFLEAKNLS 60

Query: 81  VNPAKAVQQLAKYCFDMGVEVGIVSNGRVWLIVKAFEPGKEAKDRVITTIDIVEEPPERI 140
           VNP KAV QLAKYCFD GVEVGIVSNGR W+IVKAFEPGK+ +DR++T +D+ EEP +RI
Sbjct: 61  VNPVKAVTQLAKYCFDRGVEVGIVSNGRFWIIVKAFEPGKDIRDRIVTRVDVEEEPLDRI 120

Query: 141 IVKLSCLKKDRIEKAIEICEVLNSLDNNVKRLKAFGISEGDVANYILTISIRRAYPPEIS 200
           I+KLSC+ K++IE+ +E+CE LN +++ VK LK+ GISEG++ANY+L++ +R A+PPE  
Sbjct: 121 ILKLSCISKEKIERILEMCEALNKIESGVKTLKSLGISEGEIANYVLSLPLRGAFPPEDV 180

Query: 201 HPSDKITGVYIFHEGKWRYLPIPHGTLKDALMALMSYLSEYEDEE-ERKIIKRAIAEISM 259
           HPS+K+ GVYI  +  W+YLP+P GTLK AL+ LM YL E E+EE E+KI+++AIAEI  
Sbjct: 181 HPSEKVKGVYIL-DFNWKYLPVPDGTLKGALITLMEYLKEKEEEEREKKILEKAIAEIKT 239

Query: 260 RNISGEKIIALIKAIEKEKNIKVLIAL 286
           ++I  EKII LIK IEKEK IKVLI+L
Sbjct: 240 KHIPNEKIIFLIKGIEKEKGIKVLISL 266


>pir||G72637 hypothetical protein APE1558 - Aeropyrum pernix (strain K1)
           >gi|5105243|dbj|BAA80557.1| (AP000061) 279aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 279
           
 Score = 71.8 bits (173), Expect = 9e-12
 Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 3/130 (2%)

Query: 2   MIEIIKDIQRKLRNHREVY--ISNEEAVKQHIIL-PILSSLGWKIDDPEEVRPEEKTSEG 58
           ++ II  I +   N  + Y  +S  EA+ +++++ P L S+GW + +P+EV PE  T  G
Sbjct: 11  ILNIISTIHKIKNNINKFYNKLSRNEALTRYVLIDPFLRSIGWDLGNPKEVIPEFSTEVG 70

Query: 59  RADYALIKDGKVVAFIEAKNLSVNPAKAVQQLAKYCFDMGVEVGIVSNGRVWLIVKAFEP 118
             DYAL++D K+  FIEAK L         ++  Y    GV+   +++G  W++   +  
Sbjct: 71  VPDYALLQDDKLFMFIEAKALGKIKDVDQVKVVSYAVTKGVQYLTITDGDSWIVYDLYRE 130

Query: 119 GKEAKDRVIT 128
           G   + +++T
Sbjct: 131 GNIEQKQILT 140


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.138    0.385 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103263190
Number of Sequences: 2977
Number of extensions: 4274261
Number of successful extensions: 12025
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12020
Number of HSP's gapped (non-prelim): 3
length of query: 286
length of database: 189,106,746
effective HSP length: 58
effective length of query: 228
effective length of database: 154,394,500
effective search space: 35201946000
effective search space used: 35201946000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)