BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0067 (PAB0067) DE:DNA HELICASE RELATED PROTEIN
(1308 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75198 DNA helicase related protein PAB0067 - Pyrococcus ab... 2622 0.0
pir||C71231 hypothetical protein PH0109 - Pyrococcus horikoshii ... 1846 0.0
gi|11498984 DNA helicase, putative [Archaeoglobus fulgidus] >gi|... 98 9e-19
pir||G72429 hypothetical protein TM0005 - Thermotoga maritima (s... 95 4e-18
gi|11499542 DNA helicase, putative [Archaeoglobus fulgidus] >gi|... 94 7e-18
pir||D69085 transcription control factor enhancer-binding protei... 92 3e-17
sp|Q09820|YAC6_SCHPO HYPOTHETICAL 105.6 KD PROTEIN C16C9.06C IN ... 86 3e-15
pir||T37779 probable regulator of nonsense transcript stability ... 86 3e-15
pir||D64588 probable DNA helicase - Helicobacter pylori (strain ... 83 2e-14
pir||D70476 DNA helicase - Aquifex aeolicus >gi|2984278|gb|AAC07... 81 7e-14
pir||D72258 helicase-related protein - Thermotoga maritima (stra... 77 1e-12
sp|Q09449|YQ12_CAEEL HYPOTHETICAL 175.7 KD PROTEIN C05C10.2 IN C... 74 1e-11
pir||S75309 hypothetical protein sll1582 - Synechocystis sp. (st... 73 2e-11
>pir||B75198 DNA helicase related protein PAB0067 - Pyrococcus abyssi (strain
Orsay) >gi|5457542|emb|CAB49033.1| (AJ248283) DNA
HELICASE RELATED PROTEIN [Pyrococcus abyssi]
Length = 1308
Score = 2622 bits (6721), Expect = 0.0
Identities = 1308/1308 (100%), Positives = 1308/1308 (100%)
Query: 1 MEFLTIELHPSEVARFFELEECPRFLILLERRKKGELREFMHIIRRKEEENKALTKWGNE 60
MEFLTIELHPSEVARFFELEECPRFLILLERRKKGELREFMHIIRRKEEENKALTKWGNE
Sbjct: 1 MEFLTIELHPSEVARFFELEECPRFLILLERRKKGELREFMHIIRRKEEENKALTKWGNE 60
Query: 61 FELEILQELSKKFDFPFYGFFKLEEDKTAKRFIQKYYPGNAIEFKDFEGAYEMFRELLNL 120
FELEILQELSKKFDFPFYGFFKLEEDKTAKRFIQKYYPGNAIEFKDFEGAYEMFRELLNL
Sbjct: 61 FELEILQELSKKFDFPFYGFFKLEEDKTAKRFIQKYYPGNAIEFKDFEGAYEMFRELLNL 120
Query: 121 DRVLIYQAPLAGKIGKFQLKGFSDFIIKDGNTYYILEAKFTKEEKLPHRLQAVMYAMLLR 180
DRVLIYQAPLAGKIGKFQLKGFSDFIIKDGNTYYILEAKFTKEEKLPHRLQAVMYAMLLR
Sbjct: 121 DRVLIYQAPLAGKIGKFQLKGFSDFIIKDGNTYYILEAKFTKEEKLPHRLQAVMYAMLLR 180
Query: 181 KIVEGNIKLAVITKERFPWPNEFLSFPDDVLEFVDTIEEKLNLEIKWSEPWITARCTTCQ 240
KIVEGNIKLAVITKERFPWPNEFLSFPDDVLEFVDTIEEKLNLEIKWSEPWITARCTTCQ
Sbjct: 181 KIVEGNIKLAVITKERFPWPNEFLSFPDDVLEFVDTIEEKLNLEIKWSEPWITARCTTCQ 240
Query: 241 FEPLCLSEALEKRSLGLLGIGPADKKVFEEVGIRRIEDLAKLIEFPSNSPTDFSELRINN 300
FEPLCLSEALEKRSLGLLGIGPADKKVFEEVGIRRIEDLAKLIEFPSNSPTDFSELRINN
Sbjct: 241 FEPLCLSEALEKRSLGLLGIGPADKKVFEEVGIRRIEDLAKLIEFPSNSPTDFSELRINN 300
Query: 301 QNALTEISRRTGLNVPRLVRIAQAVTQERRGIVERMYIPRTGYNLPYDDGKLVKVFLYVQ 360
QNALTEISRRTGLNVPRLVRIAQAVTQERRGIVERMYIPRTGYNLPYDDGKLVKVFLYVQ
Sbjct: 301 QNALTEISRRTGLNVPRLVRIAQAVTQERRGIVERMYIPRTGYNLPYDDGKLVKVFLYVQ 360
Query: 361 NSPITDTLIGISALIKSRVGERLVTEIVDEPPLDIEKGLIEEREMLERFFKDVIQAIKDL 420
NSPITDTLIGISALIKSRVGERLVTEIVDEPPLDIEKGLIEEREMLERFFKDVIQAIKDL
Sbjct: 361 NSPITDTLIGISALIKSRVGERLVTEIVDEPPLDIEKGLIEEREMLERFFKDVIQAIKDL 420
Query: 421 SPTDEVYPHLYFYTRGQREALVDAVRRHRELWWSKPIRALLSLRRAIDWEGFSIIKDELI 480
SPTDEVYPHLYFYTRGQREALVDAVRRHRELWWSKPIRALLSLRRAIDWEGFSIIKDELI
Sbjct: 421 SPTDEVYPHLYFYTRGQREALVDAVRRHRELWWSKPIRALLSLRRAIDWEGFSIIKDELI 480
Query: 481 ERHALPFAQGLGIIPVSIQFGYRWKDNESFREILEVLARKDGDALDLRRLYSVTDVDPLS 540
ERHALPFAQGLGIIPVSIQFGYRWKDNESFREILEVLARKDGDALDLRRLYSVTDVDPLS
Sbjct: 481 ERHALPFAQGLGIIPVSIQFGYRWKDNESFREILEVLARKDGDALDLRRLYSVTDVDPLS 540
Query: 541 GEYYPALNRDDDEIPFTPFWRALVDERRKDLKNILSQVVKAIAKIEESIPERYKEYVEKP 600
GEYYPALNRDDDEIPFTPFWRALVDERRKDLKNILSQVVKAIAKIEESIPERYKEYVEKP
Sbjct: 541 GEYYPALNRDDDEIPFTPFWRALVDERRKDLKNILSQVVKAIAKIEESIPERYKEYVEKP 600
Query: 601 GIPRGELETFDIEDGSLAKVLREYLLLEFHTRKGQLEKYYRLPEEIRAYSEKSAIVRIER 660
GIPRGELETFDIEDGSLAKVLREYLLLEFHTRKGQLEKYYRLPEEIRAYSEKSAIVRIER
Sbjct: 601 GIPRGELETFDIEDGSLAKVLREYLLLEFHTRKGQLEKYYRLPEEIRAYSEKSAIVRIER 660
Query: 661 IERRVNGDCVIRGKIVLPSENGFKEYSPEEVLVDIDEDSWVCVTPLGAFSNGDPAKIIKR 720
IERRVNGDCVIRGKIVLPSENGFKEYSPEEVLVDIDEDSWVCVTPLGAFSNGDPAKIIKR
Sbjct: 661 IERRVNGDCVIRGKIVLPSENGFKEYSPEEVLVDIDEDSWVCVTPLGAFSNGDPAKIIKR 720
Query: 721 SPLGVVEYLNHENGSIAIKFVRIPPGRFTFGHSTVECRNGRVKISDRKLYIGDYVILDPA 780
SPLGVVEYLNHENGSIAIKFVRIPPGRFTFGHSTVECRNGRVKISDRKLYIGDYVILDPA
Sbjct: 721 SPLGVVEYLNHENGSIAIKFVRIPPGRFTFGHSTVECRNGRVKISDRKLYIGDYVILDPA 780
Query: 781 IDDIGMSRSYEVLENIDDEEHEIYEFLKNIYEGNINVNPKVKLWKKEHIEEFLSLLDHLN 840
IDDIGMSRSYEVLENIDDEEHEIYEFLKNIYEGNINVNPKVKLWKKEHIEEFLSLLDHLN
Sbjct: 781 IDDIGMSRSYEVLENIDDEEHEIYEFLKNIYEGNINVNPKVKLWKKEHIEEFLSLLDHLN 840
Query: 841 EDQRKFVLDIDHRIVTLQGPPGTGKTSGAIAPAVLARAYSTIKQGKSALFIVTALSHRAV 900
EDQRKFVLDIDHRIVTLQGPPGTGKTSGAIAPAVLARAYSTIKQGKSALFIVTALSHRAV
Sbjct: 841 EDQRKFVLDIDHRIVTLQGPPGTGKTSGAIAPAVLARAYSTIKQGKSALFIVTALSHRAV 900
Query: 901 NEALIRTYRLKEELKNIKELKNVELIRGVSGEEAIEPMKRELGGIKVDIRARFTFSKSTL 960
NEALIRTYRLKEELKNIKELKNVELIRGVSGEEAIEPMKRELGGIKVDIRARFTFSKSTL
Sbjct: 901 NEALIRTYRLKEELKNIKELKNVELIRGVSGEEAIEPMKRELGGIKVDIRARFTFSKSTL 960
Query: 961 FPTVKILFATPQTVFKLVKNYEADLVVIDEASMMDLPMFLLATKNAKGQVLLVGDHRQMQ 1020
FPTVKILFATPQTVFKLVKNYEADLVVIDEASMMDLPMFLLATKNAKGQVLLVGDHRQMQ
Sbjct: 961 FPTVKILFATPQTVFKLVKNYEADLVVIDEASMMDLPMFLLATKNAKGQVLLVGDHRQMQ 1020
Query: 1021 PIQVHEWELEDRKTIEEHLPFLSALNFIRFLRGELEERELKRFKRILGRNPPKWKVDKED 1080
PIQVHEWELEDRKTIEEHLPFLSALNFIRFLRGELEERELKRFKRILGRNPPKWKVDKED
Sbjct: 1021 PIQVHEWELEDRKTIEEHLPFLSALNFIRFLRGELEERELKRFKRILGRNPPKWKVDKED 1080
Query: 1081 VLPMHRLRETFRLPQALAELHSELFYSFDGIKLRSRKEPSEEIARALRNAGKNEFLRFIL 1140
VLPMHRLRETFRLPQALAELHSELFYSFDGIKLRSRKEPSEEIARALRNAGKNEFLRFIL
Sbjct: 1081 VLPMHRLRETFRLPQALAELHSELFYSFDGIKLRSRKEPSEEIARALRNAGKNEFLRFIL 1140
Query: 1141 DPDYPVVLIVHDENGSSKVNELEAGIVKEIVEALNGVDVGVVVPYRAQKRLIRSLVNVQV 1200
DPDYPVVLIVHDENGSSKVNELEAGIVKEIVEALNGVDVGVVVPYRAQKRLIRSLVNVQV
Sbjct: 1141 DPDYPVVLIVHDENGSSKVNELEAGIVKEIVEALNGVDVGVVVPYRAQKRLIRSLVNVQV 1200
Query: 1201 DTVERFQGGERDIIIVSMTSSDPSYLLKVMDFLYDPNRLNVAGSRAREKLILIASRNLFT 1260
DTVERFQGGERDIIIVSMTSSDPSYLLKVMDFLYDPNRLNVAGSRAREKLILIASRNLFT
Sbjct: 1201 DTVERFQGGERDIIIVSMTSSDPSYLLKVMDFLYDPNRLNVAGSRAREKLILIASRNLFT 1260
Query: 1261 LSARDLDTFEILRPWKRFYIKMKREGEARKFEREGYNIVAFRWYHRKA 1308
LSARDLDTFEILRPWKRFYIKMKREGEARKFEREGYNIVAFRWYHRKA
Sbjct: 1261 LSARDLDTFEILRPWKRFYIKMKREGEARKFEREGYNIVAFRWYHRKA 1308
>pir||C71231 hypothetical protein PH0109 - Pyrococcus horikoshii
>gi|3256495|dbj|BAA29178.1| (AP000001) 1188aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 1188
Score = 1846 bits (4730), Expect = 0.0
Identities = 888/1185 (74%), Positives = 1041/1185 (86%), Gaps = 6/1185 (0%)
Query: 125 IYQAPLAGKIGKFQLKGFSDFIIKDGNTYYILEAKFTKEEKLPHRLQAVMYAMLLRKIVE 184
+YQAPL GKIG+F++KG SDFIIK G+TYYILEAKFTKEEKLPHRLQAV+Y MLL KIV
Sbjct: 1 MYQAPLIGKIGRFKVKGLSDFIIKQGDTYYILEAKFTKEEKLPHRLQAVIYGMLLDKIVR 60
Query: 185 GNIKLAVITKERFPWPNEFLSFPDDVLEFVDTIEEKLNLEIKWSEPWITARCTTCQFEPL 244
G IKLA++TK+ FPWP EFL FP+DVLEFV TIEEKL+ EIKWSE WITARCTTCQFEPL
Sbjct: 61 GKIKLAIVTKDNFPWPREFLDFPNDVLEFVTTIEEKLSEEIKWSEAWITARCTTCQFEPL 120
Query: 245 CLSEALEKRSLGLLGIGPADKKVFEEVGIRRIEDLAKLIEFPSNSPTDFSELRINNQNAL 304
CLSEALEKRSLG+LGI P D +VFE++GIR I+DLA L+ FP++SP F ++N+ +AL
Sbjct: 121 CLSEALEKRSLGILGIPPGDMRVFEKIGIRTIDDLANLMTFPTDSPISFERPQVNDHDAL 180
Query: 305 TEISRRTGLNVPRLVRIAQAVTQERRGIVERMYIPRTGYNLPYDDGKLVKVFLYVQNSPI 364
EI++RT LNVPRLVRIAQAV ER G V+R YIP TGYNLPYDDG+LVK+F+YVQNSP+
Sbjct: 181 VEITKRTSLNVPRLVRIAQAVRDERNGKVKRKYIPGTGYNLPYDDGRLVKIFIYVQNSPV 240
Query: 365 TDTLIGISALIKSRVGERLVTEIVDEPPLDIEKGLIEEREMLERFFKDVIQAIKDLSPTD 424
TDTLIGISAL+KS+ GE V E+VD+ PLD E G +EREMLERFF+ VI+ IK+LSP +
Sbjct: 241 TDTLIGISALVKSKNGEVSVVELVDDVPLDPEIGKEKEREMLERFFRKVIEVIKNLSPGE 300
Query: 425 EVYPHLYFYTRGQREALVDAVRRHRELWWSKPIRALLSLRRAIDWEGFSIIKDELIERHA 484
E+YPHLYFYTRGQRE+LVDA+RRHR LWWSKPIRALLSLR+AIDWEGFSIIKDELIERHA
Sbjct: 301 EIYPHLYFYTRGQRESLVDALRRHRGLWWSKPIRALLSLRKAIDWEGFSIIKDELIERHA 360
Query: 485 LPFAQGLGIIPVSIQFGYRWKDNESFREILEVLARKDGDALDLRRLYSVTDVDPLSGEYY 544
LPFAQGLGIIPVSIQFGYRWK+NESF+EI E+LARK+G+ L+L++LYSVT+ DP+ YY
Sbjct: 361 LPFAQGLGIIPVSIQFGYRWKENESFKEIFEILARKEGERLNLKKLYSVTEHDPIREPYY 420
Query: 545 PALNRDDDEIPFTPFWRALVDERRKD------LKNILSQVVKAIAKIEESIPERYKEYVE 598
PALNRDDDEIPFTPFW+ALV+ KD +K++L QVV+A+AKIEE IPERYKE+ +
Sbjct: 421 PALNRDDDEIPFTPFWKALVEGITKDPRKINDVKDMLEQVVRAMAKIEEEIPERYKEFTK 480
Query: 599 KPGIPRGELETFDIEDGSLAKVLREYLLLEFHTRKGQLEKYYRLPEEIRAYSEKSAIVRI 658
K GIP+ E E+FD+EDG LA+VL EYLLLEFH+RKGQLE+YYR+PEEIRAYSEKSAIVRI
Sbjct: 481 KEGIPKKEFESFDLEDGDLARVLIEYLLLEFHSRKGQLERYYRIPEEIRAYSEKSAIVRI 540
Query: 659 ERIERRVNGDCVIRGKIVLPSENGFKEYSPEEVLVDIDEDSWVCVTPLGAFSNGDPAKII 718
E IER+ NG+CVI+GKIVLPS++GFK YSPEEVLVDIDEDSWV VTPL DPAKII
Sbjct: 541 ESIERKTNGECVIKGKIVLPSDDGFKGYSPEEVLVDIDEDSWVYVTPLSILGGDDPAKII 600
Query: 719 KRSPLGVVEYLNHENGSIAIKFVRIPPGRFTFGHSTVECRNGRVKISDRKLYIGDYVILD 778
KRSPLGV+EY+NH +G I +K +PPG+FT HS +CRNG + I K+++GDY+ILD
Sbjct: 601 KRSPLGVIEYINHRDGRIILKLTNVPPGKFTLRHSKSKCRNGVINIEGVKIHLGDYIILD 660
Query: 779 PAIDDIGMSRSYEVLENIDDEEHEIYEFLKNIYEGNINVNPKVKLWKKEHIEEFLSLLDH 838
PAID+IGMSR++EVL+ I++E HE+Y L IYEGN N+NP++ +WKKE+I+EFL+ L
Sbjct: 661 PAIDEIGMSRAFEVLDKINEEAHEVYRLLNEIYEGNTNINPEIGVWKKEYIQEFLNFLPS 720
Query: 839 LNEDQRKFVLDIDHRIVTLQGPPGTGKTSGAIAPAVLARAYSTIKQGKSALFIVTALSHR 898
LN +Q F LD +HRIVTLQGPPGTGKTSGAIAPA+LARAYSTIKQGKS+LFIVTALSHR
Sbjct: 721 LNREQVNFALDCEHRIVTLQGPPGTGKTSGAIAPAILARAYSTIKQGKSSLFIVTALSHR 780
Query: 899 AVNEALIRTYRLKEELKNIKELKNVELIRGVSGEEAIEPMKRELGGIKVDIRARFTFSKS 958
AVNEALIRTY+LKE+LK+IKELKNVELIRGVS EEA++PM++EL G+KV++ +F+FSKS
Sbjct: 781 AVNEALIRTYKLKEKLKDIKELKNVELIRGVSSEEAVKPMEKELNGLKVNVTNKFSFSKS 840
Query: 959 TLFPTVKILFATPQTVFKLVKNYEADLVVIDEASMMDLPMFLLATKNAKGQVLLVGDHRQ 1018
LF TVKILFATPQT FKL K+Y+ADLVVIDEASM+DLPMF LAT NAKGQVLLVGDHRQ
Sbjct: 841 PLFLTVKILFATPQTAFKLAKDYDADLVVIDEASMLDLPMFFLATSNAKGQVLLVGDHRQ 900
Query: 1019 MQPIQVHEWELEDRKTIEEHLPFLSALNFIRFLRGELEERELKRFKRILGRNPPKWKVDK 1078
MQPIQVHEWELEDRKTIEEHLPFLS LNFIRFLRGELEERELKRFKRILGR+PP+W VDK
Sbjct: 901 MQPIQVHEWELEDRKTIEEHLPFLSVLNFIRFLRGELEERELKRFKRILGRDPPRWNVDK 960
Query: 1079 EDVLPMHRLRETFRLPQALAELHSELFYSFDGIKLRSRKEPSEEIARALRNAGKNEFLRF 1138
+ VLPMHRLRETFRLP+ALA+LHSELFYSFDGI+L SRK E+ L+ AGK+EFL+F
Sbjct: 961 DRVLPMHRLRETFRLPRALAKLHSELFYSFDGIELISRKNSDREVLETLKKAGKDEFLKF 1020
Query: 1139 ILDPDYPVVLIVHDENGSSKVNELEAGIVKEIVEALNGVDVGVVVPYRAQKRLIRSLVNV 1198
ILDP YPV+LI+H+E GS+KVNELEA IVK+I++ + G+DVGVVVPYRAQKRLIRSLVNV
Sbjct: 1021 ILDPGYPVILIIHNEGGSTKVNELEAEIVKDILKEVKGIDVGVVVPYRAQKRLIRSLVNV 1080
Query: 1199 QVDTVERFQGGERDIIIVSMTSSDPSYLLKVMDFLYDPNRLNVAGSRAREKLILIASRNL 1258
QVDTVERFQGGE+D+IIVSMTSSDP+YL KV++F+Y+PNRLNVAGSRA+EKLILIAS+NL
Sbjct: 1081 QVDTVERFQGGEKDVIIVSMTSSDPAYLSKVLEFIYNPNRLNVAGSRAKEKLILIASKNL 1140
Query: 1259 FTLSARDLDTFEILRPWKRFYIKMKREGEARKFEREGYNIVAFRW 1303
FTLSA+DL+TFEILRPWKRFYIKM+REGE+RKF + Y + FRW
Sbjct: 1141 FTLSAKDLETFEILRPWKRFYIKMRREGESRKFTKADYILEVFRW 1185
>gi|11498984 DNA helicase, putative [Archaeoglobus fulgidus]
>gi|7446666|pir||C69423 DNA helicase homolog -
Archaeoglobus fulgidus >gi|2649188|gb|AAB89860.1|
(AE001009) DNA helicase, putative [Archaeoglobus
fulgidus]
Length = 648
Score = 97.5 bits (239), Expect = 9e-19
Identities = 155/606 (25%), Positives = 244/606 (39%), Gaps = 166/606 (27%)
Query: 775 VILDPAIDDIGMSRSYEVLENIDDEEHEIYEFLKNIYEGNINVNPKVKLWKKEHIEEFLS 834
V +D D+ R E LEN+ + +F + E + K E+F
Sbjct: 116 VRIDLYASDLTFKRWIENLENLTENGKRALKFALGLEEPS-----------KTECEDFKP 164
Query: 835 LLDHLNEDQRKFV---LDIDHRIVTLQGPPGTGKTSGAIAPAVLARAYSTIKQGKSALFI 891
LN Q K V + D + + GP GTGKT V+ +K+G+ L
Sbjct: 165 FDSSLNRAQLKAVGCAVSTDDFFL-IHGPFGTGKTR-----TVVEVVRQLVKRGERVL-- 216
Query: 892 VTALSHRAVNEA--------LIRT-------YRLKE-----------ELKNIKELK---- 921
VTA S+ AV+ ++R RLKE + K I+E+K
Sbjct: 217 VTAESNTAVDNLVELLSDMKIVRLGHPSRVEKRLKEHTLASLVLNHPDYKRIEEIKGKIE 276
Query: 922 ------------NVELIRGVSGEEAIEPMKRELGGIKVD----------IRAR------F 953
+ +L RG+S EE + + G V I AR +
Sbjct: 277 EIERRMERLTKPSPQLRRGLSDEEILRLARSNRGARGVAAKKIRSMAEWIEARKALDQLY 336
Query: 954 TFSKSTLFPTVK-------ILFATPQTVFKLVKNYEADLVVIDEASMMDLPMFLLATKNA 1006
T K VK ++ +T + F L +++ D VIDEAS +P L+ A
Sbjct: 337 TEMKEEEERIVKEIIEESDVVISTNSSAFLLEESF--DTAVIDEASQATIPSVLIPINRA 394
Query: 1007 KGQVLLVGDHRQMQPIQVHEWELEDRKTIEEHLPFLSALNFIRFLRGELEERELKRFKRI 1066
+ + +L GDHRQ+ P + +L + F+++
Sbjct: 395 R-KFILAGDHRQLPPTVMKAEKLSETL-----------------------------FEKL 424
Query: 1067 LGRNPPKWKVDKEDVLPMHRLRETFRLPQALAELHSELFYSFDGIKLRSRKEPSEEIARA 1126
+ P K ++ L +R+ + L E S FY G ++ + + + A A
Sbjct: 425 IELYPEKSQL----------LNVQYRMNEKLMEFPSREFY---GGRIVAHESCT---AIA 468
Query: 1127 LRNAGKNEF--LRFILDPDYPVVLIVHDE----------NGSSKVNELEAGIVKEIVE-- 1172
L K E LR IL D P+V I + + +S+ N LEA IV EIV
Sbjct: 469 LSQIAKREAEKLREILG-DEPLVFIDTSKCKNRWEGKLADSTSRYNRLEAEIVTEIVTEL 527
Query: 1173 ---ALNGVDVGVVVPYRAQKRLIRSLVNVQVDTVERFQGGERDIIIVSMTSSDPSYLLKV 1229
L +GV+ PY Q L+R V+V+V +V+ FQG E+++II+S S+ +
Sbjct: 528 LKMGLKKEQIGVITPYDDQVDLLREKVDVEVSSVDGFQGREKEVIIISFVRSNRK---RE 584
Query: 1230 MDFLYDPNRLNVAGSRAREKLILIASRNLFTLSARDLDTFEILRPWKRFYIKMKREGEAR 1289
+ FL D RLNV+ +RAR KLI++ D +T + + R +KR+G
Sbjct: 585 IGFLDDLRRLNVSLTRARRKLIMVG----------DSETLSVNGTYARLIDHVKRKGVYV 634
Query: 1290 KFEREG 1295
+ ++ G
Sbjct: 635 ELDKNG 640
>pir||G72429 hypothetical protein TM0005 - Thermotoga maritima (strain MSB8)
>gi|4980488|gb|AAD35099.1|AE001689_5 (AE001689) DNA
helicase, putative [Thermotoga maritima]
Length = 650
Score = 95.2 bits (233), Expect = 4e-18
Identities = 147/602 (24%), Positives = 239/602 (39%), Gaps = 164/602 (27%)
Query: 775 VILDPAIDDIGMSRSYEVLENIDDEEHEIYEFLKNIYEGNINVNPKVKLWKKEHIEEFLS 834
V +D DI R E L + E + EFL + ++ EEF
Sbjct: 118 VRIDLFASDITFRRQIENLMTLSSEGKKALEFLLGKRKP-----------EESFEEEFTP 166
Query: 835 LLDHLNEDQRKFVLDI--DHRIVTLQGPPGTGKTSGAIAPAVLARAYSTIKQGKSALFIV 892
+ LNE QR+ V + GP GTGKT ++ + +GK L V
Sbjct: 167 FDEGLNESQREAVSLALGSSDFFLIHGPFGTGKTR-----TLVEYIRQEVARGKKIL--V 219
Query: 893 TALSHRAVNEALIRTY-------------------------------------RLKEEL- 914
TA S+ AV+ + R + ++KEEL
Sbjct: 220 TAESNLAVDNLVERLWGKVSLVRIGHPSRVSSHLKESTLAHQIETSSEYEKVKKMKEELA 279
Query: 915 -----------------KNIKELKNVELI------RGVSGEEAIE-----PMKRELGGIK 946
+ + + K +E RGVS E+ E + ++ I+
Sbjct: 280 KLIKKRDSFTKPSPQWRRGLSDKKILEYAEKNWSARGVSKEKIKEMAEWIKLNSQIQDIR 339
Query: 947 VDIRARFTFSKSTLFPTVKILFATPQTV-FKLVKNYEADLVVIDEASMMDLPMFLLATKN 1005
I + S + +++ +T + +++ D+VV+DEAS +P L+
Sbjct: 340 DLIERKEEIIASRIVREAQVVLSTNSSAALEILSGIVFDVVVVDEASQATIPSILIPISK 399
Query: 1006 AKGQVLLVGDHRQMQPIQVHEWELEDRKTIEEHLPFLSALNFIRFLRGELEERELKRFKR 1065
K + +L GDH+Q+ P + E D K + L F+
Sbjct: 400 GK-KFVLAGDHKQLPPTILSE----DAKDLSRTL-----------------------FEE 431
Query: 1066 ILGRNPPKWKVDKEDVLPMHRLRETFRLPQALAELHSELFYSFDGIKLRSRKEPSE---- 1121
++ R P K + L +R+ + L E SE FY DG KL++ ++
Sbjct: 432 LITRYPEKSSL----------LDTQYRMNELLMEFPSEEFY--DG-KLKAAEKVRNITLF 478
Query: 1122 EIARALRNAGKNEFLRFILDPDYPVVLIV----------HDENGSSKVNELEAGIVKEIV 1171
++ + N GK F +L P +V I ++ S+ N LEA IVKE+V
Sbjct: 479 DLGVEIPNFGK--FWDVVLSPKNVLVFIDTKNRSDRFERQRKDSPSRENPLEAQIVKEVV 536
Query: 1172 EALNGVDV-----GVVVPYRAQKRLIRSLVN--VQVDTVERFQGGERDIIIVSMTSSDPS 1224
E L + V G++ PY Q LIR L+ V+V +V+ FQG E+++II+S S+ +
Sbjct: 537 EKLLSMGVKEDWIGIITPYDDQVNLIRELIEAKVEVHSVDGFQGREKEVIIISFVRSNKN 596
Query: 1225 YLLKVMDFLYDPNRLNVAGSRAREKLILIASRNLFTLSARDLDTFEILRPWKRFYIKMKR 1284
+ FL D RLNV+ +RA+ KLI + D T + ++RF +K+
Sbjct: 597 ---GEIGFLEDLRRLNVSLTRAKRKLI----------ATGDSSTLSVHPTYRRFVEFVKK 643
Query: 1285 EG 1286
+G
Sbjct: 644 KG 645
>gi|11499542 DNA helicase, putative [Archaeoglobus fulgidus]
>gi|7483284|pir||G69494 DNA helicase homolog -
Archaeoglobus fulgidus >gi|2648582|gb|AAB89295.1|
(AE000968) DNA helicase, putative [Archaeoglobus
fulgidus]
Length = 453
Score = 94.4 bits (231), Expect = 7e-18
Identities = 115/428 (26%), Positives = 186/428 (42%), Gaps = 97/428 (22%)
Query: 854 IVTLQGPPGTGKTSGAIAPAVLARAYSTIKQGKSALFIVTALSHRAVN---EALIRTYRL 910
I+ + GPPG+GKT+ +A A + + + VT+ ++ AV+ E L R R+
Sbjct: 69 ILLVVGPPGSGKTT------FIAEAARKLSEEERVW--VTSNTNIAVDNVLEKLERALRI 120
Query: 911 KEELKNIKELKN----VELIRGVSGEE------AIEPMKRELGGIKVDIRARFTFSKSTL 960
K ++ L+ G+ + + RE+ I+ D+ K +
Sbjct: 121 GHPSKITAGVRRHSVEYNLLSGIRFSDYREYASKVAEAYREIARIQNDM-----IRKGKI 175
Query: 961 FPTVKILFATPQTVFKLVKNYEADLVVIDEASMMDLPMFLLATKNAKGQVLLVGDHRQMQ 1020
IL + + +KNY+ D V+IDEAS + LLA + A+ + ++VGD Q+
Sbjct: 176 VVGSTIL----KGMMSALKNYDFDTVIIDEASNTCISTALLALEKAE-KAVVVGDPYQLP 230
Query: 1021 PIQVHEWELEDRKTIEEHLPFLSALNFIRFLRGELEERELKRFKRILGRNPPKWKVDKED 1080
P+ +E+ K + SA NF+ I G+N W
Sbjct: 231 PV----YEVGGHKAAK-----FSAYNFLI---------------NIYGKN--LW------ 258
Query: 1081 VLPMHRLRETFRLPQALAELHSELFYSFDGIKLRSRKEPSEEIARALRNAGKNEFLRFIL 1140
LR +R +AE + Y F I + R+ E + G
Sbjct: 259 ------LRRHYRSNAKIAEFAARHVYGFLEIDEKCRRIKIEPCKTTIPEVG--------- 303
Query: 1141 DPDYPVVLI----VHDENGSSKVNELEAGIV----KEIVEALNGVDVGVVVPYRAQKRLI 1192
DP+ P+V I V G SKVNE EA +V +E+ E + +VGV+ PY Q LI
Sbjct: 304 DPEKPLVFIDCNGVERREGRSKVNEEEAEVVAMIAEELAECVGEENVGVITPYVKQAELI 363
Query: 1193 RSLVN-----VQVDTVERFQGGERDIIIVSMTSSDPSYLLKVMDFLYDPNRLNVAGSRAR 1247
R +++ V+V TV +QG E+D++I S+T++ Y F + NVA +RAR
Sbjct: 364 RGILSEFGVMVEVSTVHSYQGREKDVVIYSITATGNPY------FASEKRLFNVALTRAR 417
Query: 1248 EKLILIAS 1255
+K I + +
Sbjct: 418 KKFIAVGN 425
>pir||D69085 transcription control factor enhancer-binding protein -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622761|gb|AAB86107.1| (AE000922) transcriptional
control factor (enhancer-binding protein)
[Methanobacterium thermoautotrophicum]
Length = 642
Score = 92.4 bits (226), Expect = 3e-17
Identities = 89/317 (28%), Positives = 144/317 (45%), Gaps = 70/317 (22%)
Query: 966 ILFATPQTVFKLVKNYEADLVVIDEASMMDLPMFLLATKNAKGQVLLVGDHRQMQPIQVH 1025
+L + + D+ ++DEAS +P L+ A + +L GDHRQ+ P
Sbjct: 346 VLSTNSSAALEYIDGLRFDVAIVDEASQATIPSILIPLARAP-RFILAGDHRQLPPT--- 401
Query: 1026 EWELEDRKTIEEHLPFLSALNFIRFLRGELEERELKRFKRILGRNPPKWKVDKEDVLPMH 1085
L + E E F+ ++ R+P + ++
Sbjct: 402 ------------------------ILSRDASELERTLFEELIKRHPGRSRM--------- 428
Query: 1086 RLRETFRLPQALAELHSELFYSFDGIKLRSRKEPSEE---IARALRNAGKNEFLRFILDP 1142
L +R+ A+ E + FY DG R R PS E I + + ++ + + DP
Sbjct: 429 -LNCQYRMHPAIMEFPNREFY--DG---RIRAHPSLEDISIRDIIEDVPDSDICQKLADP 482
Query: 1143 DYPVVLIVHDENG-----------SSKVNELEAGIVKEIVEALNGV-----DVGVVVPYR 1186
D PV+ I D +G +S N LEA + I +L + ++G++ PY
Sbjct: 483 D-PVLFI--DTSGLDGCERRLKGSTSIQNPLEADLAVIISRSLMRMGVKPEEIGIITPYD 539
Query: 1187 AQKRLIRSLVNVQVDTVERFQGGERDIIIVSMTSSDPSYLLKVMDFLYDPNRLNVAGSRA 1246
Q LI S+++V+V++V+ FQG E+D+II+SM S+ + + FL D RLNV+ +RA
Sbjct: 540 DQVDLISSMIDVEVNSVDGFQGREKDVIIISMVRSNRN---GSIGFLKDLRRLNVSLTRA 596
Query: 1247 REKLILIASRNLFTLSA 1263
R KLI+I TLSA
Sbjct: 597 RRKLIIIGDSR--TLSA 611
>sp|Q09820|YAC6_SCHPO HYPOTHETICAL 105.6 KD PROTEIN C16C9.06C IN CHROMOSOME I
>gi|2130283|pir||S62476 hypothetical protein SPAC16C9.06c
- fission yeast (Schizosaccharomyces pombe)
Length = 935
Score = 85.8 bits (209), Expect = 3e-15
Identities = 120/503 (23%), Positives = 203/503 (39%), Gaps = 120/503 (23%)
Query: 836 LDHLNEDQRKFVLDIDHRIVTL-QGPPGTGKTSGAIAPAVLARAYSTIKQGKSALFIVTA 894
L LN Q + V + + ++L QGPPGTGKT + + + K+ + +V A
Sbjct: 400 LPKLNASQSEAVRAVLSKPLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPVLVCA 459
Query: 895 LSHRAVNEALIRTYR------------------------LKEELKNIK---ELKNVELIR 927
S+ AV++ + +R L E++KN K EL+ + +R
Sbjct: 460 PSNVAVDQLAEKIHRTGLRVVRVAAKSREDIESSVSFLSLHEQIKNYKFNPELQRLLKLR 519
Query: 928 GVSGEEAIEPMKRELGGIKVDIRARFTFSKSTLFPTVKILFATPQTVF-KLVKNYEADLV 986
+ E +I+ K+ +R ++ L ++ T + + Y+ V
Sbjct: 520 SENNELSIQDEKK--------LRILVAAAEKELLRAAHVICCTCVGAGDRRISKYKFRSV 571
Query: 987 VIDEASMMDLPMFLLATKNAKGQVLLVGDHRQMQPIQVHEWELEDRKTIEEHLPFLSALN 1046
+IDEA+ P ++ QV+LVGDH+Q+ P+ +++ + L LS
Sbjct: 572 LIDEATQASEPECMIPLVLGAKQVVLVGDHQQLGPVVMNK---------KVALASLSQSL 622
Query: 1047 FIRFLRGELEERELKRFKRILGRNPPKWKVDKEDVLPMHRLRETFRLPQALAELHSELFY 1106
F R + ILG +P RL +R+ L+E S FY
Sbjct: 623 FERLI--------------ILGNSP-------------FRLVVQYRMHPCLSEFPSNTFY 655
Query: 1107 SFDGIKLRSRKEPSEEIARALRNAGKNEFLRFILDPDYPVVLIVH------DENGSSKVN 1160
L++ SE IAR + + PD P++ + +G+S +N
Sbjct: 656 EG---TLQNGVTTSERIARHVDFPW--------IQPDSPLMFYANFGQEELSASGTSFLN 704
Query: 1161 ELEAGIVKEIVEALNGVDV-----GVVVPYRAQKRLIRSLVN------------VQVDTV 1203
EA ++IV +V G+V PY Q+ I + V+V +V
Sbjct: 705 RTEASTCEKIVTTFLRSNVLPEQIGIVTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASV 764
Query: 1204 ERFQGGERDIIIVSMTSSDPSYLLKVMDFLYDPNRLNVAGSRAREKLILIASRNLFTLSA 1263
+ FQG E+D II+S S + + F+ DP RLNVA +RA+ +I++ + + A
Sbjct: 765 DAFQGREKDFIILSCVRSSEH---QGIGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHA 821
Query: 1264 RDLDTFEILRPWKRFYIKMKREG 1286
W F + K +G
Sbjct: 822 L----------WYHFVLHCKEKG 834
>pir||T37779 probable regulator of nonsense transcript stability - fission yeast
(Schizosaccharomyces pombe) >gi|4894186|emb|CAA91194.2|
(Z54366) putative regulator of nonsense transcript
stability [Schizosaccharomyces pombe]
Length = 925
Score = 85.8 bits (209), Expect = 3e-15
Identities = 120/503 (23%), Positives = 203/503 (39%), Gaps = 120/503 (23%)
Query: 836 LDHLNEDQRKFVLDIDHRIVTL-QGPPGTGKTSGAIAPAVLARAYSTIKQGKSALFIVTA 894
L LN Q + V + + ++L QGPPGTGKT + + + K+ + +V A
Sbjct: 390 LPKLNASQSEAVRAVLSKPLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPVLVCA 449
Query: 895 LSHRAVNEALIRTYR------------------------LKEELKNIK---ELKNVELIR 927
S+ AV++ + +R L E++KN K EL+ + +R
Sbjct: 450 PSNVAVDQLAEKIHRTGLRVVRVAAKSREDIESSVSFLSLHEQIKNYKFNPELQRLLKLR 509
Query: 928 GVSGEEAIEPMKRELGGIKVDIRARFTFSKSTLFPTVKILFATPQTVF-KLVKNYEADLV 986
+ E +I+ K+ +R ++ L ++ T + + Y+ V
Sbjct: 510 SENNELSIQDEKK--------LRILVAAAEKELLRAAHVICCTCVGAGDRRISKYKFRSV 561
Query: 987 VIDEASMMDLPMFLLATKNAKGQVLLVGDHRQMQPIQVHEWELEDRKTIEEHLPFLSALN 1046
+IDEA+ P ++ QV+LVGDH+Q+ P+ +++ + L LS
Sbjct: 562 LIDEATQASEPECMIPLVLGAKQVVLVGDHQQLGPVVMNK---------KVALASLSQSL 612
Query: 1047 FIRFLRGELEERELKRFKRILGRNPPKWKVDKEDVLPMHRLRETFRLPQALAELHSELFY 1106
F R + ILG +P RL +R+ L+E S FY
Sbjct: 613 FERLI--------------ILGNSP-------------FRLVVQYRMHPCLSEFPSNTFY 645
Query: 1107 SFDGIKLRSRKEPSEEIARALRNAGKNEFLRFILDPDYPVVLIVH------DENGSSKVN 1160
L++ SE IAR + + PD P++ + +G+S +N
Sbjct: 646 EG---TLQNGVTTSERIARHVDFPW--------IQPDSPLMFYANFGQEELSASGTSFLN 694
Query: 1161 ELEAGIVKEIVEALNGVDV-----GVVVPYRAQKRLIRSLVN------------VQVDTV 1203
EA ++IV +V G+V PY Q+ I + V+V +V
Sbjct: 695 RTEASTCEKIVTTFLRSNVLPEQIGIVTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASV 754
Query: 1204 ERFQGGERDIIIVSMTSSDPSYLLKVMDFLYDPNRLNVAGSRAREKLILIASRNLFTLSA 1263
+ FQG E+D II+S S + + F+ DP RLNVA +RA+ +I++ + + A
Sbjct: 755 DAFQGREKDFIILSCVRSSEH---QGIGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHA 811
Query: 1264 RDLDTFEILRPWKRFYIKMKREG 1286
W F + K +G
Sbjct: 812 L----------WYHFVLHCKEKG 824
>pir||D64588 probable DNA helicase - Helicobacter pylori (strain 26695)
Length = 274
Score = 82.7 bits (201), Expect = 2e-14
Identities = 79/291 (27%), Positives = 133/291 (45%), Gaps = 50/291 (17%)
Query: 982 EADLVVIDEASMMDLPMFLLATKNAKGQVLLVGDHRQMQPIQVHEWELEDRKTIEEHLPF 1041
E D+ +IDE P L+ K +++L+GDH Q+ P + + LE ++ + +
Sbjct: 2 EFDVTIIDETGRATAPEILIPALRTK-KLILIGDHNQLPP-SIDRYLLEQLES--DDIQN 57
Query: 1042 LSALNFIRFLRGELEERELKRFKRILGRNPPKWKVDKEDVLPMHRLRETFRLPQALAELH 1101
L A++ R LEE + + + P K + FR+P ++ L
Sbjct: 58 LDAID-----RQLLEESFFENLYKYI---PESNKA----------MLNEFRMPASIGSLV 99
Query: 1102 SELFYSFD----GIKLRSRKEPSEEIARALRNAGKNEFLRFILDPDYPVVLIVHDENGSS 1157
S+LFY IK S+ + I R + G+++ + +++N
Sbjct: 100 SQLFYKEKLKNGVIKNTSQFYDPKNIIRWINVEGEHQLEK----------TSSYNKNQVQ 149
Query: 1158 KVNELEAGIVKEIVEALNGVDVGVVVPYRAQKRLIRSLVN---------VQVDTVERFQG 1208
K+ EL I + + + +G++ PY AQKR +RS V +++DTV+ FQG
Sbjct: 150 KIIELLEQINRVLNQRKIRKTIGIITPYNAQKRCLRSEVEKYGFKNFDELKIDTVDAFQG 209
Query: 1209 GERDIIIVSMTSSDPSYLLKVMDFLYDPNRLNVAGSRAREKLILIASRNLF 1259
+ DIII S + + + FL D RLNVA SRA+E LI + ++ F
Sbjct: 210 EKADIIIYSTVKTYGN-----LSFLIDSKRLNVAISRAKENLIFVGKKSFF 255
>pir||D70476 DNA helicase - Aquifex aeolicus >gi|2984278|gb|AAC07803.1| (AE000770)
DNA helicase [Aquifex aeolicus]
Length = 530
Score = 81.1 bits (197), Expect = 7e-14
Identities = 118/493 (23%), Positives = 202/493 (40%), Gaps = 123/493 (24%)
Query: 853 RIVTLQGPPGTGKTSGAI---------APAVLARAYSTI-----------------KQGK 886
++ + GPPGTGKT+ + VLA A S + + G
Sbjct: 65 KVFLIHGPPGTGKTTTLVECIKRLAQEGYKVLATADSNVAVDNLVERLVRENVKVVRVGN 124
Query: 887 SALFIVTALSHRA-----VNEALIRTYRLKEELKNIKELKNVELI------RGVSGEEAI 935
+ T H + ++ EE+ N+KE + + RG+S EE +
Sbjct: 125 PVRVLKTIQRHTLDYLVQFEPEFDKARKIYEEIDNLKEEQKKYVKPEPRYRRGLSDEEIL 184
Query: 936 EPMK-------------RELGG-IKVDIRARFTFSKST---------LFPTVKILFATPQ 972
+ K R + IK+ + + + K+ + +++ T
Sbjct: 185 KRAKTGTPVRGLSPKILRSMAKWIKLQEKVKELYEKAKKEEEKAVNKILSRAQVVCTTNS 244
Query: 973 TV-FKLVKNYEADLVVIDEASMMDLPMFLLATKNAKGQVLLVGDHRQMQPIQVHEWELED 1031
T ++++N D+V+IDEA+ P L+ K ++++ GDH+Q+ P + + E
Sbjct: 245 TAGSEVLQNLNFDVVIIDEATQATEPSCLIPLIKGK-KLIMAGDHKQLPPTVLSQEAQE- 302
Query: 1032 RKTIEEHLPFLSALNFIRFLRGELEERELKRFKRILGRNPPKWKVDKEDVLPMHRLRETF 1091
AL++ F ER L + E++ + LR +
Sbjct: 303 ------------ALSYTLF------ERLLDLY--------------GEEIYEI--LRIQY 328
Query: 1092 RLPQALAELHSELFYSFDGIKLRSRKEPSEEIARALRNAGK----NEFLRFILDPDYPVV 1147
R+ + + E +++FY KL + K + L N K E + +L+P+ VV
Sbjct: 329 RMNKKIMEFSNKMFYEG---KLIADKSVENHTIKDLINPEKLKEIPEPFKSVLEPEKVVV 385
Query: 1148 LI------VHDENGSSKVNELEAGIVKEIVE-----ALNGVDVGVVVPYRAQKRLIRSLV 1196
I +S NE EA + +IVE L +GV+ PY Q + L+
Sbjct: 386 FINVRGKEKQRRGSTSFYNEEEAKVAVKIVEYLMKIGLRSEHIGVISPYEDQVNFLEELL 445
Query: 1197 ---NVQVDTVERFQGGERDIIIVSMTSSDPSYLLKVMDFLYDPNRLNVAGSRAREKLILI 1253
V+V TV+ FQG E+++II+S S+ + FL D RLNVA +RAR KLI +
Sbjct: 446 KDFEVEVKTVDGFQGREKEVIIISFVRSNEK---GEIGFLKDYRRLNVALTRARRKLITL 502
Query: 1254 ASRNLFTLSARDL 1266
+ TLS+ ++
Sbjct: 503 GNEK--TLSSDEV 513
>pir||D72258 helicase-related protein - Thermotoga maritima (strain MSB8)
>gi|4981975|gb|AAD36482.1|AE001793_12 (AE001793)
helicase-related protein [Thermotoga maritima]
Length = 245
Score = 77.3 bits (187), Expect = 1e-12
Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 24/227 (10%)
Query: 1070 NPPKWKVDKEDVLPMHRLRET-FRLPQALAELHS-ELFYSFDG-IKLRSRKEPSEEIARA 1126
N P+++ + + P + RE +++P+ + +H +F FD I + EI +A
Sbjct: 28 NLPEFEFEIYHLRPDSKKREVRYKIPKNVVRIHEVNIFGDFDPEIPEEANLSALTEITKA 87
Query: 1127 LRNAGKNEFLRFILDPDYPVVLIVHDENGSSKVNELEAGIVKEIVEALNGVDV-----GV 1181
+ + KN L FI + ++ S+ N LEA IVKE+VE L + V G+
Sbjct: 88 IVLSPKN-VLVFIDTKNRSDRFERQRKDSPSRENPLEAQIVKEVVEKLLSMGVKEDWIGI 146
Query: 1182 VVPYRAQKRLIRSLVN--VQVDTVERFQGGERDIIIVSMTSSDPSYLLKVMDFLYDPNRL 1239
+ PY Q LIR L+ V+V +V+ FQG E+++II+S S+ + + FL D RL
Sbjct: 147 ITPYDDQVNLIRELIEAKVEVHSVDGFQGREKEVIIISFVRSNKN---GEIGFLEDLRRL 203
Query: 1240 NVAGSRAREKLILIASRNLFTLSARDLDTFEILRPWKRFYIKMKREG 1286
NV+ +RA+ KLI + D T + ++RF +K++G
Sbjct: 204 NVSLTRAKRKLI----------ATGDSSTLSVHPTYRRFVEFVKKKG 240
>sp|Q09449|YQ12_CAEEL HYPOTHETICAL 175.7 KD PROTEIN C05C10.2 IN CHROMOSOME II
>gi|7495408|pir||T18941 hypothetical protein C05C10.2 -
Caenorhabditis elegans >gi|3874068|emb|CAA88201.1|
(Z48178) similarity with yeast NAM7 protein (Swiss Prot
accession number P30771) and may possibly interact with
DNA or RNA~cDNA EST yk43d4.3 comes from this gene~cDNA
EST yk7f5.5 comes from this gene~cDNA EST yk68h2.5 comes
from this gene~cDNA EST yk13>
Length = 1551
Score = 73.7 bits (178), Expect = 1e-11
Identities = 62/191 (32%), Positives = 96/191 (49%), Gaps = 30/191 (15%)
Query: 1078 KEDVLPMHRLRETFRLPQALAELHSELFYSFDGIKLRSRKEPSEEIARALRNAGKNEFLR 1137
KE + P+ LR +R EL SELFY DG + E+AR+ +++F
Sbjct: 1266 KEKMFPVCTLRNVYRCHPKTTELLSELFY--DGALVSG----VSELARSDFMTKRDDFWP 1319
Query: 1138 FILDPDYPVVLI----VHDENGSSKVNELEAGIVKEIVEAL--------NGVDVGVVVPY 1185
+P +P++ + + G+S N E IV EIV+ L N D+GV+ Y
Sbjct: 1320 ---NPKFPMMFVNNTGASTKMGTSTSNSSEKSIVGEIVQNLINDPRNPVNPSDIGVISFY 1376
Query: 1186 RAQKRLIRSLVN---VQVDTVERFQGGERDIIIVSMTSSDPSYLLKVMDFLYDPNRLNVA 1242
AQ ++ + V+ TV+ FQG E++III+ T+ ++ DF+ NRLNVA
Sbjct: 1377 SAQTSILTEHLRGSGVKCGTVDAFQGSEKEIIIMCSTNE------RISDFMQLSNRLNVA 1430
Query: 1243 GSRAREKLILI 1253
SRA++ I+I
Sbjct: 1431 MSRAKQVTIII 1441
>pir||S75309 hypothetical protein sll1582 - Synechocystis sp. (strain PCC 6803)
>gi|1652300|dbj|BAA17223.1| (D90904) hypothetical protein
[Synechocystis sp.]
Length = 1118
Score = 73.4 bits (177), Expect = 2e-11
Identities = 121/466 (25%), Positives = 209/466 (43%), Gaps = 82/466 (17%)
Query: 828 HIEEFLSLLDH-----LNEDQRKFV---LDIDHRIVTLQGPPGTGKTSGAIAPAVLARAY 879
H+E +L+D+ L+ DQ + + L+ H + LQGPPGTGKTS + V
Sbjct: 657 HLEPQKALIDYQVNIYLSNDQNQIICQALEAKHYYL-LQGPPGTGKTSIFLVNYV----Q 711
Query: 880 STIKQGKSALFIVTALSHRAVNEALIRTYRLKEELKNIKELKNVELIRGVSGEEAIEPMK 939
+ +K K +FI+ A +++AV + + + LK+ + + ++ +R + E +
Sbjct: 712 NLLKLNKKNIFIL-AFTNKAVEQ-------ICKALKSPRYGELIDYLRLGNKTVVDESLL 763
Query: 940 RE-LGGIKVDIRARFTFSKSTLFPTVKILFATPQTVFKLVKNY--EADLVVIDEASMM-- 994
E L G D+ ++ TV +T + + L++ + E D ++IDEAS +
Sbjct: 764 AEKLTGDNADLWRKYLQENQVFVTTV----STFKDKYLLLREFVGEFDQLIIDEASQLTE 819
Query: 995 -DLPMFLLATKNAKGQVLLVGDHRQMQPIQVHEWELEDRKTIEEHLPFLSALNFIRFLRG 1053
DL ++ + +L+GD +Q+ P + + E E R +E PF I LR
Sbjct: 820 ADLAGIVVLFN----KFVLIGDQKQL-PAVITQNEEECRVEVE---PFRRYAINISDLRI 871
Query: 1054 ELEERELKRFKRILGRNPPKWKVDKEDVLPMHRLRETFRLPQALAELHSELFYSFDGIKL 1113
L ER + K W +L E +R+ + +A L + + +D +
Sbjct: 872 SLFERLINNAKN------KGWNHC------YGQLTEHYRMHRDIASL---IAHHYDRPLV 916
Query: 1114 RSRKEPSEEIARALRNAGKNEFLRFILDPDYPVVLIVHDENGSSKVNELEAGIVKEIVEA 1173
+E +I + N N+ L L + + E + N EA I IV+
Sbjct: 917 EQTQE-QRKIESSYEN-NDNDLLSK-LSKSRTIFIETPSETSIQRKNTNEAIIAATIVKT 973
Query: 1174 ------LNGVDVGVVVPYRAQKRLIRSLV------------NVQVDTVERFQGGERDIII 1215
L ++G++ P+RAQ I + ++ VDTVERFQG ER++II
Sbjct: 974 YWENKLLPMAEIGIIAPFRAQVAEINQQLEKIFAGADFSRDSIVVDTVERFQGDERELII 1033
Query: 1216 VSMTSSDPSYLLKVMDFLYDPNR------LNVAGSRAREKLILIAS 1255
S T S S +K + + D +R L V+ SRA+ KL+++ +
Sbjct: 1034 FSTTIS-WSKQVKNIQSIADGDRQGTDRKLLVSISRAKSKLVILGN 1078
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.408
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491513084
Number of Sequences: 2977
Number of extensions: 22129592
Number of successful extensions: 58296
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 58259
Number of HSP's gapped (non-prelim): 20
length of query: 1308
length of database: 189,106,746
effective HSP length: 58
effective length of query: 1250
effective length of database: 154,394,500
effective search space: 192993125000
effective search space used: 192993125000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 171 (71.0 bits)