BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0070 (PAB0070) DE:Hypothetical protein
         (234 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75198 hypothetical protein PAB0070 - Pyrococcus abyssi (st...   461  e-129
pir||B71232 hypothetical protein PH0116 - Pyrococcus horikoshii ...   282  2e-75

>pir||G75198 hypothetical protein PAB0070 - Pyrococcus abyssi (strain Orsay)
           >gi|5457547|emb|CAB49038.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 234
           
 Score =  461 bits (1173), Expect = e-129
 Identities = 234/234 (100%), Positives = 234/234 (100%)

Query: 1   MGLKLIERLKKVRDLHRSFEDLIPHIAEGSKEATIKAYQTLNEEIREISEILDEAFTIGR 60
           MGLKLIERLKKVRDLHRSFEDLIPHIAEGSKEATIKAYQTLNEEIREISEILDEAFTIGR
Sbjct: 1   MGLKLIERLKKVRDLHRSFEDLIPHIAEGSKEATIKAYQTLNEEIREISEILDEAFTIGR 60

Query: 61  EFEGSAKETIRVLMQMKGILEDVLSNLDDRGKLEFHVKKLLSFNRSFDYIVTENLNTLIT 120
           EFEGSAKETIRVLMQMKGILEDVLSNLDDRGKLEFHVKKLLSFNRSFDYIVTENLNTLIT
Sbjct: 61  EFEGSAKETIRVLMQMKGILEDVLSNLDDRGKLEFHVKKLLSFNRSFDYIVTENLNTLIT 120

Query: 121 YAEFVEIVKEGKIPSSVLDKISEVERFAHKLDALIKFLRLLYDKPSDIFKVEFSLRKANE 180
           YAEFVEIVKEGKIPSSVLDKISEVERFAHKLDALIKFLRLLYDKPSDIFKVEFSLRKANE
Sbjct: 121 YAEFVEIVKEGKIPSSVLDKISEVERFAHKLDALIKFLRLLYDKPSDIFKVEFSLRKANE 180

Query: 181 SGMRWVDEWYLQKDTGLSGDEIRDILDSLTLIGVVERKERGGGSVYRVRDIGED 234
           SGMRWVDEWYLQKDTGLSGDEIRDILDSLTLIGVVERKERGGGSVYRVRDIGED
Sbjct: 181 SGMRWVDEWYLQKDTGLSGDEIRDILDSLTLIGVVERKERGGGSVYRVRDIGED 234


>pir||B71232 hypothetical protein PH0116 - Pyrococcus horikoshii
           >gi|3256502|dbj|BAA29185.1| (AP000001) 196aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 196
           
 Score =  282 bits (714), Expect = 2e-75
 Identities = 129/194 (66%), Positives = 173/194 (88%)

Query: 41  LNEEIREISEILDEAFTIGREFEGSAKETIRVLMQMKGILEDVLSNLDDRGKLEFHVKKL 100
           +N EIR+ISEILDEAF IGREF+ + +ET+++++QMKGIL++VL N +D  KL F ++KL
Sbjct: 3   INNEIRDISEILDEAFKIGREFKETTEETMKLIIQMKGILDEVLINFNDVDKLRFSLRKL 62

Query: 101 LSFNRSFDYIVTENLNTLITYAEFVEIVKEGKIPSSVLDKISEVERFAHKLDALIKFLRL 160
           L+FNRSFDYI+TENL+TLITYAEF EI+++G +PSS+LDKI+++E F  +++ LIKFL++
Sbjct: 63  LNFNRSFDYIITENLSTLITYAEFAEIIEKGAVPSSILDKINKIEEFTKQVNTLIKFLKM 122

Query: 161 LYDKPSDIFKVEFSLRKANESGMRWVDEWYLQKDTGLSGDEIRDILDSLTLIGVVERKER 220
           LYDKPSDIFKVEFS+RKAN+ GM+WV+ WYL+++TGL+GDEIR+IL++LTLIGV ER ER
Sbjct: 123 LYDKPSDIFKVEFSIRKANQMGMKWVNIWYLERETGLNGDEIREILEALTLIGVTERAER 182

Query: 221 GGGSVYRVRDIGED 234
           GG SVYR+RD+GED
Sbjct: 183 GGESVYRIRDLGED 196


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.140    0.383 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80997327
Number of Sequences: 2977
Number of extensions: 3319081
Number of successful extensions: 11293
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11291
Number of HSP's gapped (non-prelim): 2
length of query: 234
length of database: 189,106,746
effective HSP length: 57
effective length of query: 177
effective length of database: 154,992,987
effective search space: 27433758699
effective search space used: 27433758699
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)