BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0071 (PAB0071) DE:Hypothetical protein
(481 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75198 hypothetical protein PAB0071 - Pyrococcus abyssi (st... 971 0.0
pir||C71232 hypothetical protein PH0117 - Pyrococcus horikoshii ... 917 0.0
gb|AAG20662.1| (AE005135) Vng2627c [Halobacterium sp. NRC-1] 186 5e-46
gb|AAK41353.1| Conserved hypothetical protein [Sulfolobus solfat... 150 4e-35
pir||D72461 hypothetical protein APE2336 - Aeropyrum pernix (str... 146 6e-34
>pir||H75198 hypothetical protein PAB0071 - Pyrococcus abyssi (strain Orsay)
>gi|5457548|emb|CAB49039.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 481
Score = 971 bits (2483), Expect = 0.0
Identities = 481/481 (100%), Positives = 481/481 (100%)
Query: 1 MALWKGKNEVVEVSTESEISVRIRGIYSTALTKLFLDKGFKIVQPSDVIAERLGIEKSYE 60
MALWKGKNEVVEVSTESEISVRIRGIYSTALTKLFLDKGFKIVQPSDVIAERLGIEKSYE
Sbjct: 1 MALWKGKNEVVEVSTESEISVRIRGIYSTALTKLFLDKGFKIVQPSDVIAERLGIEKSYE 60
Query: 61 DFDVDIYDRNHGITIVGTKVEEVRKALEEELVDVFFRKLPYKLYGVYKGIVVKRDDRYVY 120
DFDVDIYDRNHGITIVGTKVEEVRKALEEELVDVFFRKLPYKLYGVYKGIVVKRDDRYVY
Sbjct: 61 DFDVDIYDRNHGITIVGTKVEEVRKALEEELVDVFFRKLPYKLYGVYKGIVVKRDDRYVY 120
Query: 121 VDIGNAIGTVLVEELPDAVEGDEVVVQVKKHNVLPHLSIMITIPGDYAVLIPKPIGVQRH 180
VDIGNAIGTVLVEELPDAVEGDEVVVQVKKHNVLPHLSIMITIPGDYAVLIPKPIGVQRH
Sbjct: 121 VDIGNAIGTVLVEELPDAVEGDEVVVQVKKHNVLPHLSIMITIPGDYAVLIPKPIGVQRH 180
Query: 181 VKISRKIRDPEERERLRILGLSVNLGEWGILWRTAAAYKEWSLLRDELVRLSKIADKLKE 240
VKISRKIRDPEERERLRILGLSVNLGEWGILWRTAAAYKEWSLLRDELVRLSKIADKLKE
Sbjct: 181 VKISRKIRDPEERERLRILGLSVNLGEWGILWRTAAAYKEWSLLRDELVRLSKIADKLKE 240
Query: 241 ADKYSAPAEIIEGRSIYEVEFGGGAKKKLDEIRNRVVPTIEGHHQYKSYDPEFTLAVEVA 300
ADKYSAPAEIIEGRSIYEVEFGGGAKKKLDEIRNRVVPTIEGHHQYKSYDPEFTLAVEVA
Sbjct: 241 ADKYSAPAEIIEGRSIYEVEFGGGAKKKLDEIRNRVVPTIEGHHQYKSYDPEFTLAVEVA 300
Query: 301 EGILAKMPSQRQKISEGFVEAITNSKGPRVGWIFTLNHVKPDGQVIKIGPGEVIEVSSRP 360
EGILAKMPSQRQKISEGFVEAITNSKGPRVGWIFTLNHVKPDGQVIKIGPGEVIEVSSRP
Sbjct: 301 EGILAKMPSQRQKISEGFVEAITNSKGPRVGWIFTLNHVKPDGQVIKIGPGEVIEVSSRP 360
Query: 361 LRVKIRRNLRPGRVYDGLEVPIEPGDYAITEIEAGKWWFVHRYYDRNGNLKGEFYNINTP 420
LRVKIRRNLRPGRVYDGLEVPIEPGDYAITEIEAGKWWFVHRYYDRNGNLKGEFYNINTP
Sbjct: 361 LRVKIRRNLRPGRVYDGLEVPIEPGDYAITEIEAGKWWFVHRYYDRNGNLKGEFYNINTP 420
Query: 421 VEIYPDKARYVDLEVDIVKWPDGKKEIIDKEKLKEHYEDGIISEKLYKAVLRIVQEVYER 480
VEIYPDKARYVDLEVDIVKWPDGKKEIIDKEKLKEHYEDGIISEKLYKAVLRIVQEVYER
Sbjct: 421 VEIYPDKARYVDLEVDIVKWPDGKKEIIDKEKLKEHYEDGIISEKLYKAVLRIVQEVYER 480
Query: 481 V 481
V
Sbjct: 481 V 481
>pir||C71232 hypothetical protein PH0117 - Pyrococcus horikoshii
>gi|3256503|dbj|BAA29186.1| (AP000001) 472aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 472
Score = 917 bits (2343), Expect = 0.0
Identities = 437/472 (92%), Positives = 467/472 (98%)
Query: 10 VVEVSTESEISVRIRGIYSTALTKLFLDKGFKIVQPSDVIAERLGIEKSYEDFDVDIYDR 69
+V+VSTESEISVRIRGIYSTALTKL LDKGFKIVQPSD+IAERLG+EKSYEDFD+DIYDR
Sbjct: 1 MVKVSTESEISVRIRGIYSTALTKLLLDKGFKIVQPSDIIAERLGLEKSYEDFDIDIYDR 60
Query: 70 NHGITIVGTKVEEVRKALEEELVDVFFRKLPYKLYGVYKGIVVKRDDRYVYVDIGNAIGT 129
NHGIT+VGTKVEE+RK LEEEL+DVFFRKLPYKLYGVYKGIVVKRDDRYVYVDIGNAIGT
Sbjct: 61 NHGITVVGTKVEEIRKVLEEELIDVFFRKLPYKLYGVYKGIVVKRDDRYVYVDIGNAIGT 120
Query: 130 VLVEELPDAVEGDEVVVQVKKHNVLPHLSIMITIPGDYAVLIPKPIGVQRHVKISRKIRD 189
VL+EELPDA EGDEV+VQVKKHNVLPHLS++ITIPGDYAVLIPKPIGVQRHVKISRKIRD
Sbjct: 121 VLIEELPDATEGDEVIVQVKKHNVLPHLSVLITIPGDYAVLIPKPIGVQRHVKISRKIRD 180
Query: 190 PEERERLRILGLSVNLGEWGILWRTAAAYKEWSLLRDELVRLSKIADKLKEADKYSAPAE 249
PEERERLRILGLSVNLGEWGILWRTAAAYKEWS+LRDE+VRLSK+ADKLKEA+KYSAPAE
Sbjct: 181 PEERERLRILGLSVNLGEWGILWRTAAAYKEWSVLRDEIVRLSKVADKLKEAEKYSAPAE 240
Query: 250 IIEGRSIYEVEFGGGAKKKLDEIRNRVVPTIEGHHQYKSYDPEFTLAVEVAEGILAKMPS 309
IIEGR+IYE+EFGGGAKKKLDEIRN+VVPTIEGHHQYKSYDPEFTLAVEVAEGILAKMPS
Sbjct: 241 IIEGRNIYEIEFGGGAKKKLDEIRNKVVPTIEGHHQYKSYDPEFTLAVEVAEGILAKMPS 300
Query: 310 QRQKISEGFVEAITNSKGPRVGWIFTLNHVKPDGQVIKIGPGEVIEVSSRPLRVKIRRNL 369
QRQKISEGF+EAI NSKGP++GW+FTLNHVKPDGQVIKIGPGEVIEVS +PL+VKIRRNL
Sbjct: 301 QRQKISEGFIEAIVNSKGPKLGWMFTLNHVKPDGQVIKIGPGEVIEVSVKPLKVKIRRNL 360
Query: 370 RPGRVYDGLEVPIEPGDYAITEIEAGKWWFVHRYYDRNGNLKGEFYNINTPVEIYPDKAR 429
+PGRVYDGLEVPIEPGDYAITEIEAGKWWFVHRYYDRNGNLKGEFYNINTPVEIYPDKAR
Sbjct: 361 KPGRVYDGLEVPIEPGDYAITEIEAGKWWFVHRYYDRNGNLKGEFYNINTPVEIYPDKAR 420
Query: 430 YVDLEVDIVKWPDGKKEIIDKEKLKEHYEDGIISEKLYKAVLRIVQEVYERV 481
Y+DLEVDIVKWPDGKKEIIDKEKLKEHYEDGIISEKLYK+VLRIVQE+YE+V
Sbjct: 421 YIDLEVDIVKWPDGKKEIIDKEKLKEHYEDGIISEKLYKSVLRIVQEIYEKV 472
>gb|AAG20662.1| (AE005135) Vng2627c [Halobacterium sp. NRC-1]
Length = 471
Score = 186 bits (467), Expect = 5e-46
Identities = 145/478 (30%), Positives = 215/478 (44%), Gaps = 29/478 (6%)
Query: 21 VRIRGIYSTALTKLFLDKGFKIVQPSDVIAER-----LGIEKSYEDFDVDIYDRNHGITI 75
VR+RGIY+TALT+L + G +V S I R LG + + D + + GIT
Sbjct: 4 VRVRGIYATALTQLLRNAGLDVVAASPPIRARFPDADLGAAEPHADIRMTPDRQGVGITA 63
Query: 76 VGTKVEEVRKALEEELV-DVFFRKLPYKLYGVYKGIVVKRDDRYVYVDIGNAIGTVLVEE 134
G +A+ +L D F P V+ V +D+G+ L
Sbjct: 64 HGDDHARAVRAVVADLPRDTFVWPDPVPRGAVFDAAVDHTVGGGAILDLGDDREAYLPFG 123
Query: 135 LPD--AVEGDEVVVQVKK-----HNVLPHLSIMITIPGDYAVLIPKPIGVQRHVKISRKI 187
D +GD + V ++ H+ P + IT+ G A L GV ++
Sbjct: 124 AVDDHVTDGDTLRVAIRDPAPPWHDDRPTATSTITVSGALASL---DRGVD--ALVAGAA 178
Query: 188 RDPEERERLRILGLSVNLGEWGILWRTAAAYKEWSLLRDELVRLSKIADKLK----EADK 243
D E R L WG+ W A L L+ AD+L+ +AD
Sbjct: 179 TDRAELARATELLDPDIPDNWGVYWEYDGADASLDARGTALDTLAARADRLEATLADADG 238
Query: 244 YSAPAEIIEGRSIYEVEFGGGAKKKLDEIRNRVVPTIEGHHQYKSYDPEFTLAVEVAEGI 303
P + + FG + LD+ R V T+ GHH+ K+ + AV+ AE +
Sbjct: 239 GDTPGLVAAPDTTLWAWFGRETRCALDDHRRTVAATMPGHHRIKAGSDAASDAVDFAEAL 298
Query: 304 LAKMPSQRQKISEGFVEAITNSKGPRVGWIFTLNHVKPDGQVIKIGPGEVIEVSSRPLRV 363
A + E A+T+ GP VG + H KPDG +I +G GEV + S+ R+
Sbjct: 299 GAS-------VDEFPFGAVTDQFGPSVGASIEIQHGKPDGALISLGRGEVTDRSAENARI 351
Query: 364 KIRRNLRPGRVYDGLEVPIEPGDYAITEIEAGKWWFVHRYYDRNGNLKGEFYNINTPVEI 423
+ R + G YD L V E GD A T G WW+ Y +G KG + N+ TPVE+
Sbjct: 352 TVEREMTGGGTYDALGVAREAGDTATTRFTEGNWWYPTVYRSEDGERKGTYLNVCTPVEV 411
Query: 424 YPDKARYVDLEVDIVKWPDGKKEIIDKEKLKEHYEDGIISEKLYKAVLRIVQEVYERV 481
+PD RYVDL VD++K DG EI+D+E+L++ DG++SE+L + L + + V V
Sbjct: 412 FPDAVRYVDLHVDVIKHADGAVEIVDREELQDCVADGLVSEELAEKALSVAERVQSAV 469
>gb|AAK41353.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 424
Score = 150 bits (374), Expect = 4e-35
Identities = 137/481 (28%), Positives = 218/481 (44%), Gaps = 87/481 (18%)
Query: 21 VRIRGIYSTALTKLFLDKGFKIVQPSDVIAERLGIEKSYEDFDV---DIYDRNHGITIVG 77
VRIRGIY+TALT +F ++IVQ S I+ER E + D+ D D I ++G
Sbjct: 5 VRIRGIYATALTSIFSSLSYEIVQQSVEISERFMQEINNLSADITIKDFEDDRGKIIVMG 64
Query: 78 TKVEEVRKALEEELVDVF----FRKLPYKLYGVYKGIVVKRDDRYVYVDIGNAIGTVLVE 133
+ +E++L +VF + P KLY V ++ D+ Y + VE
Sbjct: 65 NGI------IEDDLRNVFKYSFHWRSPVKLYSV-----IEIDESCTYANFK-------VE 106
Query: 134 ELPDAVEGDEVVVQVKKHNVLPHLSIMITIPGDYAVLIPKPIGVQRHVKI---------S 184
P EG I+I P D +++ + V ++ + S
Sbjct: 107 --PCLREG-----------------IVIKPPYDGKIILSETKAVSKYAIVWRGKGITTFS 147
Query: 185 RKIRDPEERERLRILGLSVNLGEWGILWRTAAAYKEWSLLRDELVRLSKIADKLKEADKY 244
I D EE+ RL L L +N + + WR+ A Y + L+++L RL + + D
Sbjct: 148 EHIVDEEEKMRLLTLSLPLNRKGYNVKWRSNAKYVALNELKEDLERLILRYENREFRD-- 205
Query: 245 SAPAEIIEGRSIYEVEFGGGAKKKLDEIRNRVVPTIEGHHQYK-SYDPEFTLAVEVAEGI 303
+G Y + K LDE+R VV T++ HH K SY+ E + +G
Sbjct: 206 -------QGEDFYLITLSLPDKLYLDEVRKNVVDTVKYHHMLKLSYNREVDSLEKDKKGS 258
Query: 304 LAKMPSQRQKISEGFVEAITNSKGPRVGWIFTLNHVKPDGQVIKIGPGEVIE--VSSRPL 361
L K+ EG + + H+K DG+VI + G+VIE V+
Sbjct: 259 LGKL-------LEGLISDFLK-----------IEHIKADGKVIYLRGGKVIEKEVNDNGY 300
Query: 362 RVKIRRNLRPGRVYDGLEVPIEPGDYAITEIEAGKWWFVHRYYDR-NGNLKGEFYNINTP 420
R+ +RR + DG+ IE GDY I E + KW+ +H+YY + +LKG + NI+TP
Sbjct: 301 RIVLRREFEGNGILDGIGKKIEEGDYDIVEYNSDKWYQIHKYYSGIDNSLKGVYINISTP 360
Query: 421 VEIYPDKARYVDLEVDIVKWPDGKKEIIDKEKL--KEHYEDGIISEKLYKAVLRIVQEVY 478
E+ K RY+DLE+DI D + ++D+++L K Y + K + V ++ +
Sbjct: 361 PELLRGKIRYLDLEIDIA-IRDSEIALLDEDELNKKSIYMPSSLVNKAKEVVNYLINRIQ 419
Query: 479 E 479
+
Sbjct: 420 Q 420
>pir||D72461 hypothetical protein APE2336 - Aeropyrum pernix (strain K1)
>gi|5106037|dbj|BAA81348.1| (AP000064) 467aa long
hypothetical protein [Aeropyrum pernix]
Length = 467
Score = 146 bits (364), Expect = 6e-34
Identities = 129/486 (26%), Positives = 216/486 (43%), Gaps = 67/486 (13%)
Query: 21 VRIRGIYSTALTKLFLDKGFKIVQPSDVIAERLGIEKSYEDFDVDIYDRNHGITIVGTKV 80
+R+RGIY+TAL L L KG+ + S + R+ +V + R IT+
Sbjct: 1 MRVRGIYATALVALALKKGYLLSDLSKTMLSRV---------EVPVSTRPPNITV----- 46
Query: 81 EEVRKALEEELVDVFFRKLPYKLYGVYKGIVVKRDDRYVYVDIGNAI---GTVLVEELPD 137
K EE ++ PY+ +R + + ++G+A + + + D
Sbjct: 47 ----KHGEESRDEIVIHAFPYE--------AGERFEADLLEEVGHAAVRRSLLGLRSVVD 94
Query: 138 A-------VEGDEVVVQVKKHNVLPHLSIMITI------PGDYAV----------LIPKP 174
A EG V+ + K P M+ + PG V L +
Sbjct: 95 ARAAEGCRAEGPGGVLIIVKGGECPQPGSMVRVTVVRSPPGSDVVEGRVGVELTGLTVRV 154
Query: 175 IGVQRHVKISRKIRDPEERERLRILGLS-VNLGEWGILWRTAAAYKEWSLLRDELVRLSK 233
+ V+ISR + + + L+ + S ++L ++ + R+ A + DE+ RL++
Sbjct: 155 MHPGSGVRISRHLTSEDAAKALKAVEASGIDLNQFSVHIRSGARLASEGDISDEIRRLAR 214
Query: 234 IADKLKEADKYSAPAEIIEGRSIYEVEFGGGAKKKLDEIRNRVVPTIEGHHQYKSYDPEF 293
A++L PA + G + V AK +D +R + PT+ HH KS+ E
Sbjct: 215 EAERLWREGPGGEPAVLSRGEYLSLVYLPSTAKHVMDGLRTSLYPTVNNHHSLKSWSSE- 273
Query: 294 TLAVEVAEGILAKMPSQ--RQKISEGFV-EAITNSKGPR-VGWIFTLNHVKPDGQVIKIG 349
AEG+L + R+ + G + I R VG + H +PDG+ I++G
Sbjct: 274 ------AEGLLTDFAEEGVREGLWGGEAGDLIVRFISSRLVGRTAVVLHRRPDGETIRLG 327
Query: 350 PGEVIEV---SSRPLRVKIRRNLRPGRVYDGLEVPIEPGDYAITEIEAGKWWFVHRYYDR 406
P V S R + + R R VYDGL + PGD +T + G W +H YYD+
Sbjct: 328 PFRVSSYRPSSGRGGEIVLERTFRSPGVYDGLGLERRPGDRGVTHVYMGDWLTIHEYYDK 387
Query: 407 NGNLKGEFYNINTPVEIYPDKARYVDLEVDIVKWPDGKKEIIDKEKLKEHYEDGIISEKL 466
+G L G + NINTP E+ +Y+DL VD+VK P + E ID+ +L++ G+++++L
Sbjct: 388 SGRLLGVYANINTPPEVGFQGLKYLDLLVDVVKRPGEEPETIDQGELEKACRSGLLTDRL 447
Query: 467 YKAVLR 472
+ R
Sbjct: 448 CEEAAR 453
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.141 0.407
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186763675
Number of Sequences: 2977
Number of extensions: 8634060
Number of successful extensions: 25982
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25968
Number of HSP's gapped (non-prelim): 7
length of query: 481
length of database: 189,106,746
effective HSP length: 56
effective length of query: 425
effective length of database: 155,591,474
effective search space: 66126376450
effective search space used: 66126376450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 167 (69.5 bits)