BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0075 (PAB0075) DE:Hypothetical protein
(241 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75200 hypothetical protein PAB0075 - Pyrococcus abyssi (st... 481 e-135
pir||D71233 probable 3-isopropylmalate dehydratase - Pyrococcus ... 442 e-123
sp|Q57570|Y106_METJA HYPOTHETICAL PROTEIN MJ0106 >gi|2128128|pir... 171 9e-42
pir||C69040 probable 3-isopropylmalate dehydratase - Methanobact... 160 2e-38
gi|11498850 conserved hypothetical protein [Archaeoglobus fulgid... 155 6e-37
gi|11498136 conserved hypothetical protein [Archaeoglobus fulgid... 112 4e-24
gb|AAK41203.1| Conserved hypothetical protein [Sulfolobus solfat... 111 6e-24
emb|CAC12561.1| (AL445067) conserved hypothetical protein [Therm... 102 3e-21
pir||C72764 hypothetical protein APE0104 - Aeropyrum pernix (str... 96 5e-19
sp|Q58607|YC10_METJA HYPOTHETICAL PROTEIN MJ1210 >gi|2128726|pir... 94 2e-18
pir||A75131 hypothetical protein PAB0569 - Pyrococcus abyssi (st... 91 1e-17
pir||A71087 hypothetical protein PH0958 - Pyrococcus horikoshii ... 85 5e-16
gb|AAG19068.1| (AE005006) Vng0546c [Halobacterium sp. NRC-1] 84 2e-15
emb|CAC12326.1| (AL445066) conserved hypothetical protein [Therm... 80 2e-14
gb|AAG19032.1| (AE005003) 3-isopropylmalate dehydratase; Ppd [Ha... 75 6e-13
>pir||A75200 hypothetical protein PAB0075 - Pyrococcus abyssi (strain Orsay)
>gi|5457557|emb|CAB49048.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 241
Score = 481 bits (1226), Expect = e-135
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MEGKPVSIVLPEIENAVFIEGYPGIGLVGHIAANFLAKELNMEMIGYVESSFIPPMTLIL 60
MEGKPVSIVLPEIENAVFIEGYPGIGLVGHIAANFLAKELNMEMIGYVESSFIPPMTLIL
Sbjct: 1 MEGKPVSIVLPEIENAVFIEGYPGIGLVGHIAANFLAKELNMEMIGYVESSFIPPMTLIL 60
Query: 61 EGKPNPPLRFYGKDNLIIAVADIYLPPTLINEIAKEIANYLKENNAEKVISLGGMGIGIF 120
EGKPNPPLRFYGKDNLIIAVADIYLPPTLINEIAKEIANYLKENNAEKVISLGGMGIGIF
Sbjct: 61 EGKPNPPLRFYGKDNLIIAVADIYLPPTLINEIAKEIANYLKENNAEKVISLGGMGIGIF 120
Query: 121 KEKFEVWGVGGTEEENNELKNLGVKLLEYGSISGMSGRLLWEASKRGIKSYVILGETFGD 180
KEKFEVWGVGGTEEENNELKNLGVKLLEYGSISGMSGRLLWEASKRGIKSYVILGETFGD
Sbjct: 121 KEKFEVWGVGGTEEENNELKNLGVKLLEYGSISGMSGRLLWEASKRGIKSYVILGETFGD 180
Query: 181 RPDPRAAANVVEVLNKMLNLNVSVEPLLREAEMIEEQLRKMHEQMEKARRSVEKQYETMY 240
RPDPRAAANVVEVLNKMLNLNVSVEPLLREAEMIEEQLRKMHEQMEKARRSVEKQYETMY
Sbjct: 181 RPDPRAAANVVEVLNKMLNLNVSVEPLLREAEMIEEQLRKMHEQMEKARRSVEKQYETMY 240
Query: 241 L 241
L
Sbjct: 241 L 241
>pir||D71233 probable 3-isopropylmalate dehydratase - Pyrococcus horikoshii
>gi|3256512|dbj|BAA29195.1| (AP000001) 241aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 241
Score = 442 bits (1124), Expect = e-123
Identities = 215/241 (89%), Positives = 234/241 (96%)
Query: 1 MEGKPVSIVLPEIENAVFIEGYPGIGLVGHIAANFLAKELNMEMIGYVESSFIPPMTLIL 60
ME +PV+IVLP+IEN + IEGYPGIGLVGHIAANFLAKEL ME+IGYVESSFIPPM+LIL
Sbjct: 1 MENRPVNIVLPKIENPILIEGYPGIGLVGHIAANFLAKELKMEVIGYVESSFIPPMSLIL 60
Query: 61 EGKPNPPLRFYGKDNLIIAVADIYLPPTLINEIAKEIANYLKENNAEKVISLGGMGIGIF 120
EGKPNPPLRFYGKDN+IIAVADIYLPPTLINEIAKEIANYL++N AEKVISLGGMGIGIF
Sbjct: 61 EGKPNPPLRFYGKDNIIIAVADIYLPPTLINEIAKEIANYLEQNKAEKVISLGGMGIGIF 120
Query: 121 KEKFEVWGVGGTEEENNELKNLGVKLLEYGSISGMSGRLLWEASKRGIKSYVILGETFGD 180
K+KFEVWGVGGTEEEN EL++LGVK+LEYGSISGMSG+LLWEAS+RG+KSYVILGETFGD
Sbjct: 121 KDKFEVWGVGGTEEENKELQDLGVKILEYGSISGMSGKLLWEASRRGLKSYVILGETFGD 180
Query: 181 RPDPRAAANVVEVLNKMLNLNVSVEPLLREAEMIEEQLRKMHEQMEKARRSVEKQYETMY 240
RPDPRAAANVVEVL++ML LNVSVEPLL+EAEMIEEQLRKMHEQMEKARRSVEKQYETMY
Sbjct: 181 RPDPRAAANVVEVLDRMLTLNVSVEPLLKEAEMIEEQLRKMHEQMEKARRSVEKQYETMY 240
Query: 241 L 241
L
Sbjct: 241 L 241
>sp|Q57570|Y106_METJA HYPOTHETICAL PROTEIN MJ0106 >gi|2128128|pir||B64313 probable
3-isopropylmalate dehydratase - Methanococcus jannaschii
>gi|1590883|gb|AAB98088.1| (U67468) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 238
Score = 171 bits (428), Expect = 9e-42
Identities = 95/230 (41%), Positives = 137/230 (59%), Gaps = 5/230 (2%)
Query: 12 EIENAVFIEGYPGIGLVGHIAANFLAKELNMEMIGYVESSFIPPMTLILEGKPNPPLRFY 71
E EN + IE +PG GLVG IA + K+LN++ GY E I P+T I +G P PP+R Y
Sbjct: 14 EFENPIVIEAFPGTGLVGSIAGFQIIKDLNLKYFGYFEVDGILPLTTIEKGIPYPPVRAY 73
Query: 72 GKDNLIIAVADIYLPPTLINEIAKEIANYLKENNAEKVISLGGMGIGIFKEKFEVWGVGG 131
+ II +DI + P IN +A+ I N + +SLGG+ G + +V+G+
Sbjct: 74 ANKDFIILFSDIIISPFKINGLAEFIVKTFSNKNPKLFVSLGGIMAG---KSEKVFGIAN 130
Query: 132 TEEENNELKNLGVKLLEYGSISGMSGRLLWEASKRGIKSYVILGETFGDRPDPRAAANVV 191
EE +LKN V++ ++G + GM G LL + G + +L ET G RPDPR AN++
Sbjct: 131 KEELIEDLKNY-VEIFDFGVVGGMGGNLLIKCHDNGFDAIGLLAETVGIRPDPRGGANLL 189
Query: 192 EVLNKMLNLNVSVEPLLREAEMIEEQLRKMHEQMEKARRSVEKQYETMYL 241
EVLNKM NLNV++E L++EAE IE +L+++ EQ K K+Y MY+
Sbjct: 190 EVLNKMFNLNVNIENLIKEAEAIENKLKELAEQHLKMMSKSRKEY-PMYI 238
>pir||C69040 probable 3-isopropylmalate dehydratase - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622409|gb|AAB85782.1| (AE000895) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 237
Score = 160 bits (400), Expect = 2e-38
Identities = 78/221 (35%), Positives = 137/221 (61%), Gaps = 4/221 (1%)
Query: 7 SIVLPEIENAVFIEGYPGIGLVGHIAANFLAKELNMEMIGYVESSFIPPMTLILEGKPNP 66
+I ++E+AV +EG PG+GL+G+I L ++L M IGY++S + PP+ ++ +G
Sbjct: 11 TIYSEDVEDAVVLEGSPGVGLIGNILGWLLVEDLKMREIGYIDSKYFPPLAVLYKGVAIH 70
Query: 67 PLRFYGKDNLIIAVADIYLPPTLINEIAKEIANYLKENNAEKVISLGGMGIGIFKEKFE- 125
P R Y D +++ ++D LPP ++ ++ I ++ N + ++I+ M + +EK +
Sbjct: 71 PFRIYEGDGIVLFLSDFILPPAVVYDMTNAIVEWMVRNKSRELITFNSM---VVREKSQP 127
Query: 126 VWGVGGTEEENNELKNLGVKLLEYGSISGMSGRLLWEASKRGIKSYVILGETFGDRPDPR 185
V G G ++E L +LG+ ++ +G+++G+SG LL + I + + E PDPR
Sbjct: 128 VAGAGNSQEVIQRLADLGIPIVPFGNLNGISGTLLTRCAVNDIPASCLFAEILNPYPDPR 187
Query: 186 AAANVVEVLNKMLNLNVSVEPLLREAEMIEEQLRKMHEQME 226
AAA+VVEVLN+ML +V EPLL+EA+ IE +L+K+ E ++
Sbjct: 188 AAASVVEVLNEMLGTSVDPEPLLQEAQAIESRLKKLAETVQ 228
>gi|11498850 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429657|pir||B69406 probable 3-isopropylmalate
dehydratase - Archaeoglobus fulgidus
>gi|2649332|gb|AAB89995.1| (AE001018) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 239
Score = 155 bits (387), Expect = 6e-37
Identities = 88/228 (38%), Positives = 140/228 (60%), Gaps = 8/228 (3%)
Query: 12 EIENAVFIEGYPGIGLVGHIAANFLAKELNMEMIGYVESSFIPPMTLILEGKPNPPLRFY 71
++EN + I +PGIGLVG IA EL +E IG V+S +PP+ + EG PP+R Y
Sbjct: 13 DVENPILITSFPGIGLVGTIATAHYIMELKLESIGIVDSRLLPPVASLYEGVILPPVRVY 72
Query: 72 GKDNL--IIAVADIYLPPTLINEIAKEIANYLKENNAEKVISLGGMGIGIFKEKFEVWGV 129
+L ++ +D+ + P +++K+I + E NA +V S G + F++K V+
Sbjct: 73 QSADLGFVLIHSDVPIIPQAAIDMSKKIVQFAAEINARRVYSFAG--VATFEDKKRVFAA 130
Query: 130 GGTEEENNELKNLGVKLLEYGSISGMSGRLLWEASKRGIKSYVILGETFGDRPDPRAAAN 189
++E E+K+ ++ + G+ISG++G ++ E + V+LGET G PDPRAAA+
Sbjct: 131 ATSKELLEEVKD-HAEIFKTGTISGIAGSIMNECVAAKMPGIVLLGETLGFNPDPRAAAS 189
Query: 190 VVEVLNKMLNLNVSVEPLLREAEMIEEQLRKMHEQMEKARRSVEKQYE 237
++E +NK++N NVSVE LL+EAEMIE Q++K+ EQ AR E++ E
Sbjct: 190 LIEAVNKIMNWNVSVEKLLKEAEMIEAQMQKLAEQ---ARMQEERKEE 234
>gi|11498136 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429655|pir||E69315 probable 3-isopropylmalate
dehydratase - Archaeoglobus fulgidus
>gi|2650098|gb|AAB90711.1| (AE001068) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 259
Score = 112 bits (277), Expect = 4e-24
Identities = 83/243 (34%), Positives = 124/243 (50%), Gaps = 18/243 (7%)
Query: 13 IENAVFIEGYPGIGLVGHIAANFLAKELNMEMIGYVESSFIPPMTLILEG----KPNPPL 68
+EN VFIEG PGIG VG + A+ L EL E + + S + PP ++LE P +
Sbjct: 18 LENPVFIEGLPGIGHVGKLVADHLVNELKAEKVVEIYSHYFPPQVMVLEDGTIRMPKNEV 77
Query: 69 RFYGKD----NLIIAVADIYLPPTLINEIAKEIAN----YLKENNAEKVISLGGMGIGIF 120
+ D +L+I V D ++ NE E+ N K+ +A + +LGG G+G
Sbjct: 78 YAWKSDGNGTDLLILVGDFQ---SISNEGHFELVNAYIDVAKKFSARMIYTLGGYGVGKL 134
Query: 121 KEKFEVWGVGGTEEENNELKNLGVKLLEY---GSISGMSGRLLWEASKRGIKSYVILGET 177
E+ V G + E ELK+ GVK G I G SG LL + GI + ++G T
Sbjct: 135 VEEPYVIGAANSPEIVEELKSYGVKFEPGEPGGGIIGASGLLLGVSELEGIPAACLMGVT 194
Query: 178 FGDRPDPRAAANVVEVLNKMLNLNVSVEPLLREAEMIEEQLRKMHEQMEKARRSVEKQYE 237
G DP++A V++VL KML+L VSVE L A+ +E+ + ++ E E A + + +
Sbjct: 195 SGYMVDPKSAKVVLDVLCKMLSLEVSVEALEERAKEMEKIIAQIKEMQEMAVQQWKSDED 254
Query: 238 TMY 240
Y
Sbjct: 255 LRY 257
>gb|AAK41203.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 251
Score = 111 bits (276), Expect = 6e-24
Identities = 66/206 (32%), Positives = 118/206 (57%), Gaps = 4/206 (1%)
Query: 23 PGIGLVGHIAANFLAKELNMEMIGYVESS-FIPPMTLILEGKPNPPLRFYGKDNLIIAVA 81
P GLVG I+ FL LN+ G + S+ +PP++ ++ G P+R Y DN ++ +
Sbjct: 29 PDAGLVGSISGEFLINYLNLREYGEIYSNKHLPPISHVVNGVAKSPIRLYHYDNFLLLHS 88
Query: 82 DIYLPPTLINEIAKEIANYLKENNAEKVISLGGMGIG--IFKEKFEVWGVGGTEEENNEL 139
I +P IN +A + +Y ++ + +IS+ G+ + + EK + V +E+ EL
Sbjct: 89 WIAIPANSINHLANLVVSYAEKYGIQTIISITGVPVPNRLDLEKPTPYWVASSEDFAKEL 148
Query: 140 KNLGV-KLLEYGSISGMSGRLLWEASKRGIKSYVILGETFGDRPDPRAAANVVEVLNKML 198
+L + K G +SG +L++++K+ I++ +I+ E+F D PDP AAA +++L+KML
Sbjct: 149 DSLNLMKKFVEGYVSGPYAPILFQSAKKLIRNLLIVVESFLDLPDPEAAAVALDILSKML 208
Query: 199 NLNVSVEPLLREAEMIEEQLRKMHEQ 224
V LL+EAE I E+++ + +Q
Sbjct: 209 GFKVDTSSLLKEAEEIRERIKGLMQQ 234
>emb|CAC12561.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 252
Score = 102 bits (253), Expect = 3e-21
Identities = 58/228 (25%), Positives = 121/228 (52%), Gaps = 4/228 (1%)
Query: 15 NAVFIEGYPGIGLVGHIAANFLAKELNMEMIGYVESSFIPPMTLILEGKPNPPLRFYGKD 74
N V + G+ G G +AA+++ + L M + ++ S IPP+ + + GK P R Y +
Sbjct: 26 NPVVLCGFAGSTPTGVLAASYIVETLGMHQVAHLISQHIPPVAVFVGGKLRHPFRIYANN 85
Query: 75 N--LIIAVADIYLPPTLINEIAKEIANYLKENNAEKVISLGGMGIGIFKEKFEVWGVGGT 132
+ +++A+ ++ + I EI+ + N++ + A +++ + G E+ V+ V
Sbjct: 86 SNTVLVAMCEVPISSAHIYEISNTLMNWIDQVGASEIVIMEGSPANGIPEERPVFAVA-E 144
Query: 133 EEENNELKNLGVKLLEYGSISGMSGRLLWEASKRGIKSYVILGETFGDRPDPRAAANVVE 192
+ + ++ K G++ + I+GM G +L E R I + T D PDP A +++E
Sbjct: 145 KPKLDKFKKAGIQPADSAIIAGMGGGILNECLVRKITGLSFITPTSVDIPDPGAVLSIIE 204
Query: 193 VLNKMLNLNVSVEPLLREAEMIEEQLRKMHEQMEKARRSVEKQYETMY 240
+NK NL + + L + + ++EQ++K+ EQ ++ + +K+ ++MY
Sbjct: 205 AINKAYNLKIKTDLLEEQVKALDEQIKKIEEQYKELQEK-QKEPQSMY 251
>pir||C72764 hypothetical protein APE0104 - Aeropyrum pernix (strain K1)
>gi|5103492|dbj|BAA79013.1| (AP000058) 262aa long
hypothetical protein [Aeropyrum pernix]
Length = 262
Score = 95.6 bits (234), Expect = 5e-19
Identities = 62/223 (27%), Positives = 115/223 (50%), Gaps = 4/223 (1%)
Query: 19 IEGYPGIGLVGHIAANFLAKELNMEM-IGYVESSFIPPMTLILEGKPNPPLRFYGKDNLI 77
I G P +GLVG I L + +M +G +PP+ ++ G+ P+R Y ++
Sbjct: 32 IVGLPDVGLVGAITGMHLIRSKDMSYTVGIDHYGALPPVVIMNRGRVLHPIRIYRSGDVA 91
Query: 78 IAVADIYLPPTLINEIAKEIANYLKENNAEKVISLGGMGIG--IFKEKFEVWGVGGTEEE 135
+ D+ + P I + + Y + E +IS G+G + +EK ++ + ++
Sbjct: 92 ALITDVPILPAAIPSFSAAVVEYSRRRGIEYIISATGVGNPKRLEQEKPSLYWLASDKKA 151
Query: 136 NNELKNLGVKLL-EYGSISGMSGRLLWEASKRGIKSYVILGETFGDRPDPRAAANVVEVL 194
+ +L + E G I G +L EA K+ + + V+L ++F D PDP AAA +VE +
Sbjct: 152 SLLASSLRMASEPEQGIIVGPYAIILKEAMKKHVHNLVLLADSFIDIPDPEAAAVIVEGI 211
Query: 195 NKMLNLNVSVEPLLREAEMIEEQLRKMHEQMEKARRSVEKQYE 237
N + LNVSV+ L+++AE I+ ++R + ++ + + K+ E
Sbjct: 212 NSITGLNVSVDELIKQAEEIKLRMRDLMKETKAVMARMGKEME 254
>sp|Q58607|YC10_METJA HYPOTHETICAL PROTEIN MJ1210 >gi|2128726|pir||A64451 probable
3-isopropylmalate dehydratase - Methanococcus jannaschii
>gi|1591839|gb|AAB99213.1| (U67562) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 258
Score = 93.6 bits (229), Expect = 2e-18
Identities = 72/229 (31%), Positives = 113/229 (48%), Gaps = 10/229 (4%)
Query: 13 IENAVFIEGYPGIGLVGHIAANFLAKELNMEMIGYVESSFIPPMTLILEGKPNPPL--RF 70
+ENA+ IEG PGIG VG +AA L E E + PP L+ + + F
Sbjct: 18 LENALLIEGLPGIGHVGRLAAEHLVHEFKGEKFLELFCYDFPPQVLVKDDGTIEYMCAEF 77
Query: 71 YG----KDNLIIAVADIYLPPTLINEIAKEIANYLKENNAEKVISLGGMGIGIFKEKFEV 126
Y K +++ L P +A+EI E A V +LGG G+G E+ +V
Sbjct: 78 YAIREPKPMIVVLGNTQALSPIGQYHLAEEIVKIGIEYGANFVYTLGGFGVGKLCEEVKV 137
Query: 127 WGVGGTEEENNELKNLGVKL-LEYGSISGMSGRLLWEASKRGIKSYVILGETFGDRPDPR 185
+G ++E +LK + + G I G +G +L A GI ++GET G DP
Sbjct: 138 YGATTSKELAKKLKEHDILFRTDGGGIVGAAGLMLMFADLNGIPGICLMGETPGYLIDPN 197
Query: 186 AAANVVEVLNKMLNLNVSVEPLLREAEMIE---EQLRKMHEQMEKARRS 231
AA V+E K+ N+ +++E L + A+ +E E+++K E+M KA ++
Sbjct: 198 AAKAVLEKFCKLENIEINMEELEKRAKGMEQFIEKIKKFEEEMLKAAQA 246
>pir||A75131 hypothetical protein PAB0569 - Pyrococcus abyssi (strain Orsay)
>gi|5458273|emb|CAB49762.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 267
Score = 90.9 bits (222), Expect = 1e-17
Identities = 74/238 (31%), Positives = 119/238 (49%), Gaps = 21/238 (8%)
Query: 11 PEIENAVFIEGYPGIGLVGHIAANFLAKELNMEMIGYVESSFIPPMTLILEGKPNPPLR- 69
PEI + VFIEG PGIGLVG +AA L +EL + + S LI +G ++
Sbjct: 12 PEIYDPVFIEGLPGIGLVGKLAAEHLIQELKAKKFAELYSPHFMHQVLIRKGSIVELMKN 71
Query: 70 --FYGKD------NLIIAVADIYLPPTLIN---EIAKEIANYLKENNAEKVISLGGMGIG 118
+Y K +LII D +PPT E+ ++ ++++E ++I++GG +
Sbjct: 72 EFYYWKSPDDEHRDLIIITGDTQVPPTDSYGHFEVVGKMLDFVQEFGTREIITMGGYQVP 131
Query: 119 IFKEKFEVWGVGG----TEEENNELKNLGVKLL----EYGSISGMSGRLLWEASKRGIKS 170
+ + V E +LK+ V ++ E G+I G +G LL RG+
Sbjct: 132 ELQGEPRVLAAVTHPDLVEYYKEKLKDCSVNVIWREDEGGAIVGAAGLLLGIGKLRGMFG 191
Query: 171 YVILGETFGDRPDPRAAANVVEVLNKMLNLNVSVEPLLREAEMIEEQLRKMHEQMEKA 228
+LGE+ G D +AA V+ + K+LNL + + L A+ EE LRK+ E+M++A
Sbjct: 192 ISLLGESLGYIVDAKAAKAVLSAVAKILNLEIDMTALEERAKETEEILRKV-EEMQRA 248
>pir||A71087 hypothetical protein PH0958 - Pyrococcus horikoshii
>gi|3257372|dbj|BAA30055.1| (AP000004) 267aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 267
Score = 85.4 bits (208), Expect = 5e-16
Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 20/233 (8%)
Query: 11 PEIENAVFIEGYPGIGLVGHIAANFLAKELNMEMIGYVESSFIPPMTLILEGKPNPPLR- 69
P+I + VFIEG PGIGLVG +AA L +EL + + S LI +G ++
Sbjct: 12 PDIYDPVFIEGLPGIGLVGKLAAEHLIQELKAKKFAELYSPHFMHQVLIRKGSIVELMKN 71
Query: 70 --FYGKD------NLIIAVADIYLPPTLIN---EIAKEIANYLKENNAEKVISLGGMGIG 118
+Y K +LII D +PPT E+A ++ ++++E ++I++GG +
Sbjct: 72 EFYYWKSPDDEHRDLIIVTGDTQVPPTDSYGHFEVAGKMLDFVQEFGTREIITMGGYQVP 131
Query: 119 IFKEKFEVWGVGGTEE----ENNELKNLGVKLL----EYGSISGMSGRLLWEASKRGIKS 170
+ + V + +LK+ V ++ E G+I G +G LL RG+
Sbjct: 132 ELQGEPRVLAAVTHPDLISYYQEKLKDCKVNVMWREDEGGAIVGAAGLLLGIGKLRGMFG 191
Query: 171 YVILGETFGDRPDPRAAANVVEVLNKMLNLNVSVEPLLREAEMIEEQLRKMHE 223
+LGE+ G D +AA V+ + K+L L + + L A+ EE LRK+ E
Sbjct: 192 ISLLGESLGYIVDAKAAKAVLTAVAKILGLEIDMTALEERAKETEEILRKVEE 244
>gb|AAG19068.1| (AE005006) Vng0546c [Halobacterium sp. NRC-1]
Length = 250
Score = 83.9 bits (204), Expect = 2e-15
Identities = 63/227 (27%), Positives = 103/227 (44%), Gaps = 12/227 (5%)
Query: 11 PEIENAVFIEGYPGIGLVGHIAANFLAKELNMEMIGYVESSFIPPMTLI-------LEGK 63
P +++ +EG PG+G VG + A + E + E++ V S + PP + L
Sbjct: 12 PSLDDPALVEGLPGVGHVGKLVAEHVIAEADSELVCRVHSEYFPPQVTVGDDSVAELAAA 71
Query: 64 PNPPLRFYGKDNLIIAVADIYLPPTLIN-EIAKEIANYLKENNAEKVISLGGMGIGIFKE 122
+ G+D L++ D T+ + + + E +A V SLGG+ G E
Sbjct: 72 EIHAVETGGRD-LLVVTGDHQAQDTVGQYRVTEAFLDAAAEFDATDVFSLGGVPTGELVE 130
Query: 123 KFEVWGVGGTEEENNELKNLGVKLLEY---GSISGMSGRLLWEASKRGIKSYVILGETFG 179
+V G + + L + GV+ G I G SG L+ KRG + ++GET G
Sbjct: 131 DHDVIGAVSSAALKDGLADAGVEFRSEEPAGGIVGSSGLLVGLGGKRGFDAACLMGETSG 190
Query: 180 DRPDPRAAANVVEVLNKMLNLNVSVEPLLREAEMIEEQLRKMHEQME 226
DP+AA V+ VL L+ + E L AE +EE + ++ + E
Sbjct: 191 YLVDPKAAKAVLAVLGARLDFEMDEEALDDRAEEMEEVVSRLQDMEE 237
>emb|CAC12326.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 251
Score = 80.0 bits (194), Expect = 2e-14
Identities = 62/237 (26%), Positives = 112/237 (47%), Gaps = 12/237 (5%)
Query: 12 EIENAVFIEGYPGIGLVGHIAANFLAKELNMEMIGYVESSFIPPMTLILEGKPNPPLR-- 69
++++ + I G PGIG VG IAA+++ ++LNM + + S ++PP I + +R
Sbjct: 13 KLKSPILIGGLPGIGNVGKIAADYIVEKLNMTKMYDIFSQYLPPQVFINDDSVVHLVRNS 72
Query: 70 -FY----GKDNLIIAVADIY-LPPTLINEIAKEIANYLKENNAEKVISLGGMGIGIFKEK 123
+Y GK +L+I D E++ ++ KE + +LGG IG +K
Sbjct: 73 IYYKKMRGKHDLVILAGDFQGTTQEAQYELSYQVLQIAKEIGVSMIYTLGGYSIGKIVDK 132
Query: 124 FEVWGVGGTEEENNELKNLGV---KLLEYGSISGMSGRLLWEASKR-GIKSYVILGETFG 179
V G + +L+ GV K G I G +G +L + + ++GET G
Sbjct: 133 PRVLGAVTDKNLVADLEKNGVVFPKGEPGGGIVGSAGLILGLGMELFNMNGACLMGETSG 192
Query: 180 DRPDPRAAANVVEVLNKMLNLNVSVEPLLREAEMIEEQLRKMHEQMEKARRSVEKQY 236
DP++A V+ VL + L + + + + ++ IE+ KM E+ + + + Y
Sbjct: 193 YFADPKSAMEVLNVLQRQLGIKIDMSDIETRSKQIEQITGKMAEEFQNKQNKEDLGY 249
>gb|AAG19032.1| (AE005003) 3-isopropylmalate dehydratase; Ppd [Halobacterium sp.
NRC-1]
Length = 248
Score = 75.3 bits (182), Expect = 6e-13
Identities = 58/237 (24%), Positives = 104/237 (43%), Gaps = 34/237 (14%)
Query: 12 EIENAVFIEGYPGIGLVGHIAANFLAKELNMEMIGYVESSFIPPMTLILEGK--PNPPLR 69
+IE+ V IEG PG+GLVG IA + + +M +G V + IP +T+ E PP+R
Sbjct: 11 DIEDPVLIEGLPGVGLVGKIATDHIIDVFDMSCVGSVSCAAIPQVTVYTEDSHAATPPVR 70
Query: 70 FYGKDN--LIIAVADIYLPPTLINEIAKEIANYLKENNAEKVISLG-------------- 113
Y ++ L+ D+ + E A + ++ ++ V G
Sbjct: 71 IYADESRGLLALQGDVPISRNNGTEFADCVTGWIDHHDVTPVYLSGLPSDDHELGDLPTV 130
Query: 114 -GMGIGIFKEKFEVWGVGGTEEENNELKNLGVKLLEYGSISGMSGRLLWEASKRGIKSYV 172
G+G G E+ +G E G I G +G L+ A++R + +
Sbjct: 131 FGIGSGALPERIAALDIGTPPER--------------GVIGGPTGALMTAATQRQLDAAA 176
Query: 173 ILGETFGDRPDPRAAANVVE-VLNKMLNLNVSVEPLLREAEMIEEQLRKMHEQMEKA 228
++ E+ PDP A +++ + ++ ++V + L+ A I Q ++ EQM+ A
Sbjct: 177 LVVESDPQFPDPAGARRLIDHAIEPLVEVSVPTDDLVDRAADIRSQKEQLAEQMQHA 233
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.138 0.387
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92965925
Number of Sequences: 2977
Number of extensions: 3955603
Number of successful extensions: 12758
Number of sequences better than 1.0e-10: 15
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 12734
Number of HSP's gapped (non-prelim): 15
length of query: 241
length of database: 189,106,746
effective HSP length: 57
effective length of query: 184
effective length of database: 154,992,987
effective search space: 28518709608
effective search space used: 28518709608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 164 (68.3 bits)