BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0076 (PAB0076) DE:Hypothetical protein
         (126 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75200 hypothetical protein PAB0076 - Pyrococcus abyssi (st...   252  8e-67
pir||E71233 hypothetical protein PH0127 - Pyrococcus horikoshii ...   223  7e-58
gi|11498849 conserved hypothetical protein [Archaeoglobus fulgid...    75  4e-13

>pir||B75200 hypothetical protein PAB0076 - Pyrococcus abyssi (strain Orsay)
           >gi|5457558|emb|CAB49049.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 126
           
 Score =  252 bits (638), Expect = 8e-67
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 1   MEIPLLSGIARRALDSLMRNPYRTLEIRSARNYLTLERLHEGDLVFLTYESLEDVTRGTE 60
           MEIPLLSGIARRALDSLMRNPYRTLEIRSARNYLTLERLHEGDLVFLTYESLEDVTRGTE
Sbjct: 1   MEIPLLSGIARRALDSLMRNPYRTLEIRSARNYLTLERLHEGDLVFLTYESLEDVTRGTE 60

Query: 61  GIIAKITRIEKMHQRIPWEESDEREISICRVQLKLVGLGRIMEVHEKEGITVVKVREMMH 120
           GIIAKITRIEKMHQRIPWEESDEREISICRVQLKLVGLGRIMEVHEKEGITVVKVREMMH
Sbjct: 61  GIIAKITRIEKMHQRIPWEESDEREISICRVQLKLVGLGRIMEVHEKEGITVVKVREMMH 120

Query: 121 HEMTMG 126
           HEMTMG
Sbjct: 121 HEMTMG 126


>pir||E71233 hypothetical protein PH0127 - Pyrococcus horikoshii
           >gi|3256513|dbj|BAA29196.1| (AP000001) 126aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 126
           
 Score =  223 bits (562), Expect = 7e-58
 Identities = 102/126 (80%), Positives = 120/126 (94%)

Query: 1   MEIPLLSGIARRALDSLMRNPYRTLEIRSARNYLTLERLHEGDLVFLTYESLEDVTRGTE 60
           ME+PLLSGI RR LDS++RNPYRT+EIRSARNYL LER+HEGDL+FLTYESLEDVT+GTE
Sbjct: 1   MELPLLSGITRRTLDSILRNPYRTIEIRSARNYLVLERVHEGDLIFLTYESLEDVTKGTE 60

Query: 61  GIIAKITRIEKMHQRIPWEESDEREISICRVQLKLVGLGRIMEVHEKEGITVVKVREMMH 120
           GIIAK+ RIE+ HQRIPWEESDERE+SICRVQL+LVGLGRI+E+HE+EG+T+VKVREM H
Sbjct: 61  GIIAKVVRIERTHQRIPWEESDEREMSICRVQLRLVGLGRIIEIHEREGVTMVKVREMTH 120

Query: 121 HEMTMG 126
           HE++MG
Sbjct: 121 HEISMG 126


>gi|11498849 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483104|pir||A69406 conserved hypothetical protein
           AF1250 - Archaeoglobus fulgidus
           >gi|2649339|gb|AAB90002.1| (AE001018) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 129
           
 Score = 74.5 bits (180), Expect = 4e-13
 Identities = 39/107 (36%), Positives = 65/107 (60%), Gaps = 3/107 (2%)

Query: 1   MEIPLLSGIARRALDSLMRNPYRTLEIRSARNYLTLERLHEGDLVFLTYESLEDVTRGTE 60
           M+  +L+GI+R  ++ LMR   RT+E+RSA N  T  +   GD VFLT   + D+ RG  
Sbjct: 1   MKCLVLTGISRNVIEELMRRNIRTIELRSAHNVATALKAEPGDCVFLTPARINDLGRGVS 60

Query: 61  GIIAKITRIEKMHQRIPWEES---DEREISICRVQLKLVGLGRIMEV 104
           G++A++   E M Q + ++     +E E+++ R+ LK   LGR+++V
Sbjct: 61  GLVAEVRGKEVMSQSLFYQSPSYIEESELTVVRLMLKPKSLGRLVQV 107


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.138    0.387 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41044703
Number of Sequences: 2977
Number of extensions: 1440760
Number of successful extensions: 3931
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3929
Number of HSP's gapped (non-prelim): 3
length of query: 126
length of database: 189,106,746
effective HSP length: 54
effective length of query: 72
effective length of database: 156,788,448
effective search space: 11288768256
effective search space used: 11288768256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)