BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0078 (PAB0078) DE:Hypothetical protein
         (263 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75200 hypothetical protein PAB0078 - Pyrococcus abyssi (st...   551  e-156
pir||G71233 hypothetical protein PH0129 - Pyrococcus horikoshii ...   480  e-135
pir||B75219 hypothetical protein PAB0188 - Pyrococcus abyssi (st...   132  3e-30
pir||F71203 hypothetical protein PH1898 - Pyrococcus horikoshii ...   125  6e-28
gi|11498074 conserved hypothetical transmembrane protein [Archae...   109  5e-23
sp|Q57882|Y440_METJA HYPOTHETICAL PROTEIN MJ0440 >gi|2128325|pir...   108  8e-23
pir||C69064 conserved hypothetical protein MTH1480 - Methanobact...    97  3e-19
sp|P29085|YFUS_PYRWO HYPOTHETICAL 12.3 KD PROTEIN IN FUS 3'REGIO...    82  6e-15

>pir||D75200 hypothetical protein PAB0078 - Pyrococcus abyssi (strain Orsay)
           >gi|5457560|emb|CAB49051.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 263
           
 Score =  551 bits (1404), Expect = e-156
 Identities = 263/263 (100%), Positives = 263/263 (100%)

Query: 1   MDVHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAV 60
           MDVHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAV
Sbjct: 1   MDVHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAV 60

Query: 61  TPMVIFGSTVRALVDGGILKPNPWILTPGIFFTAFFLILPALFLDVKLKLYPKLTIAWGT 120
           TPMVIFGSTVRALVDGGILKPNPWILTPGIFFTAFFLILPALFLDVKLKLYPKLTIAWGT
Sbjct: 61  TPMVIFGSTVRALVDGGILKPNPWILTPGIFFTAFFLILPALFLDVKLKLYPKLTIAWGT 120

Query: 121 LLAGYANYLLIINAKCWKPYELTLLHTLVSFVVVFAFYKVRPFERLYLYPVLAHYFDIAS 180
           LLAGYANYLLIINAKCWKPYELTLLHTLVSFVVVFAFYKVRPFERLYLYPVLAHYFDIAS
Sbjct: 121 LLAGYANYLLIINAKCWKPYELTLLHTLVSFVVVFAFYKVRPFERLYLYPVLAHYFDIAS 180

Query: 181 TVVAIHFYSYMEVHWVERHLVNAFGAYAYYPWITVILFLVYYILRNMVPDGDERNYWYLA 240
           TVVAIHFYSYMEVHWVERHLVNAFGAYAYYPWITVILFLVYYILRNMVPDGDERNYWYLA
Sbjct: 181 TVVAIHFYSYMEVHWVERHLVNAFGAYAYYPWITVILFLVYYILRNMVPDGDERNYWYLA 240

Query: 241 IYILGLGPAIRDPAQMVLQIACQ 263
           IYILGLGPAIRDPAQMVLQIACQ
Sbjct: 241 IYILGLGPAIRDPAQMVLQIACQ 263


>pir||G71233 hypothetical protein PH0129 - Pyrococcus horikoshii
           >gi|3256515|dbj|BAA29198.1| (AP000001) 267aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 267
           
 Score =  480 bits (1223), Expect = e-135
 Identities = 221/263 (84%), Positives = 241/263 (91%)

Query: 1   MDVHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAV 60
           +++HQF WEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKY+IKPLKIKVDERLFLAV
Sbjct: 5   VNLHQFFWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYIIKPLKIKVDERLFLAV 64

Query: 61  TPMVIFGSTVRALVDGGILKPNPWILTPGIFFTAFFLILPALFLDVKLKLYPKLTIAWGT 120
           TPMVIFGST+RALVDGG+L PNPWILTPGIFFTAFFLILP LF DVKLKLYPKLTIAWG+
Sbjct: 65  TPMVIFGSTIRALVDGGVLAPNPWILTPGIFFTAFFLILPVLFADVKLKLYPKLTIAWGS 124

Query: 121 LLAGYANYLLIINAKCWKPYELTLLHTLVSFVVVFAFYKVRPFERLYLYPVLAHYFDIAS 180
           LLA YANYLLIIN KCWKPYELTLLH LVSF VV A+YK +PFE+LYLYP LAHYFDIAS
Sbjct: 125 LLAIYANYLLIINVKCWKPYELTLLHALVSFAVVLAYYKFKPFEKLYLYPTLAHYFDIAS 184

Query: 181 TVVAIHFYSYMEVHWVERHLVNAFGAYAYYPWITVILFLVYYILRNMVPDGDERNYWYLA 240
           TVVAIHFY Y EVHWVE++LV  FGAYAYYPWIT+IL +VYY+L+ +V D +ER YWYLA
Sbjct: 185 TVVAIHFYGYREVHWVEKYLVGMFGAYAYYPWITIILIIVYYVLKELVLDPEERYYWYLA 244

Query: 241 IYILGLGPAIRDPAQMVLQIACQ 263
           +YILGLGP IRDPAQMVLQI C+
Sbjct: 245 VYILGLGPGIRDPAQMVLQIPCR 267


>pir||B75219 hypothetical protein PAB0188 - Pyrococcus abyssi (strain Orsay)
           >gi|5457710|emb|CAB49201.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 267
           
 Score =  132 bits (330), Expect = 3e-30
 Identities = 84/268 (31%), Positives = 136/268 (50%), Gaps = 18/268 (6%)

Query: 6   FLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAVTPMVI 65
           F  +YF+ P+    GYNP+NT+ YA+I G A I  YK V+K L+IK+D   F A+ P +I
Sbjct: 5   FFRKYFVNPIKYNTGYNPVNTLTYAVILGLATILVYK-VLKRLRIKIDNAFFRALIPYMI 63

Query: 66  FGSTVRALVDGGILKPNPWILTPGIFFTAFFLILPALFLDVKLKLYPK---LTIAWGTLL 122
           FG+  RAL D G+       ++PGI+F  F +  PAL +  +     +   L+  WG +L
Sbjct: 64  FGAFTRALTDAGVFPRTYITVSPGIYFLVFSIAFPALLISHRFFKDWRGVFLSFGWGLVL 123

Query: 123 AGYANYLLIINAKCWK-PYELTLLHTLVSFVVVFAFYKVRPFERLYL-----YPVLAHYF 176
              A     ++A   K  + L +L   + FV++          R+YL     Y    H++
Sbjct: 124 VDVA----ALSANIGKVSFRLEVLKYFIPFVIIAELVIYLLSRRVYLIRKNSYLFYVHFY 179

Query: 177 DIASTVVAIHFYSYMEVHWVERHLVNAFG-AYAYYPWITVILFLVYYILRNMVPDGDER- 234
           D  +T V + F  Y E H V R L+   G A   Y     ILF+  +I+  +  +G+++ 
Sbjct: 180 DATTTFVGVDFMGYWEQHVVPRLLIGLTGTAAVMYVLKFSILFIALWIMEKLEKEGEDKE 239

Query: 235 --NYWYLAIYILGLGPAIRDPAQMVLQI 260
             ++  + I+ILG  P  R+  +M++ +
Sbjct: 240 LLDFIRMVIFILGFAPGTRNLLRMLMGV 267


>pir||F71203 hypothetical protein PH1898 - Pyrococcus horikoshii
           >gi|3258338|dbj|BAA31021.1| (AP000007) 267aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 267
           
 Score =  125 bits (311), Expect = 6e-28
 Identities = 81/267 (30%), Positives = 130/267 (48%), Gaps = 10/267 (3%)

Query: 3   VHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAVTP 62
           +  F  +YF+ P+    GYNP+NT+ YA+I G A I  YK  +K LKIK+D   F A+ P
Sbjct: 2   LRDFFEKYFVNPIKYNTGYNPVNTLTYAIILGIATILVYKG-LKKLKIKIDNAFFRALVP 60

Query: 63  MVIFGSTVRALVDGGILKPNPWILTPGIFFTAFFLILPALFLDVK-LKLYPKL--TIAWG 119
            +IFG+  RAL D  +       ++PGI+F    +  PAL +  K  K + ++     WG
Sbjct: 61  YMIFGAFTRALTDASVFPRTYITVSPGIYFLVSLIATPALLIPYKFFKDWRRVFSLFGWG 120

Query: 120 TLLAGYANYLLIINAKCWKPYELTLLHTLVSF--VVVFAFYKVRPFERLYLYPVLAHYFD 177
            +L   A  L+ +    +    L      V+   VV++   K     R   Y    H++D
Sbjct: 121 LVLIDVAALLVNLQKVTFNFQVLKYFIPFVTIAEVVIYLLTKKLSIVRDNSYLFYVHFYD 180

Query: 178 IASTVVAIHFYSYMEVHWVERHLVNAFG-AYAYYPWITVILFLVYYILRNMVPDGDER-- 234
             +T V + F  Y E H V R L+   G A   Y    V+L+   +I+  +  +G+E   
Sbjct: 181 ATTTFVGVDFMGYWEQHVVPRFLIGLTGTAAVMYVLKFVVLYTALWIMVKLEEEGEEEEL 240

Query: 235 -NYWYLAIYILGLGPAIRDPAQMVLQI 260
            ++  + I+ILG  P  R+  +M++ +
Sbjct: 241 LDFIKMVIFILGFAPGTRNLLRMLMGV 267


>gi|11498074 conserved hypothetical transmembrane protein [Archaeoglobus
           fulgidus] >gi|7483261|pir||F69307 conserved hypothetical
           transmembrane protein AF0462 - Archaeoglobus fulgidus
           >gi|2650167|gb|AAB90775.1| (AE001073) conserved
           hypothetical transmembrane protein [Archaeoglobus
           fulgidus]
           Length = 276
           
 Score =  109 bits (269), Expect = 5e-23
 Identities = 79/269 (29%), Positives = 133/269 (49%), Gaps = 20/269 (7%)

Query: 1   MDVHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAV 60
           MD+ +F+ EY+I  +  +EGYN +NT+ +A I   AV   Y+++ K  ++  DE+   A 
Sbjct: 13  MDLWEFIKEYYIDSIVYKEGYNIVNTLTWAAILIVAVYALYRFLGK--RLDFDEKFVYAN 70

Query: 61  TPMVIFGSTVRALVDGGILKP--NPWILTPGIFFTAFFLILPALFLDVKL---KLYPKLT 115
            P ++ GS+VR + D G L P  +   +TP I+   F +  P L L ++    K Y    
Sbjct: 71  IPYILLGSSVRVVEDAGFLTPPISYIFMTPFIYILIFAIAFPTLLLSLRFYGEKYYRVYA 130

Query: 116 I-----AWGTLLAGYANYLLIINAKCWK-PYELTLLHTLVSFVVVFAFYKVRPFER-LYL 168
           +     A G L+  +AN L ++N   W  P  + L     +F  VF    ++P +  L L
Sbjct: 131 VVGLVPAVGVLILLFAN-LPVVN--WWVIPAGVGLA---AAFTAVFYAISLKPMKNELSL 184

Query: 169 YPVLAHYFDIASTVVAIHFYSYMEVHWVERHLVNAFGAYAYYPWITVILFLVYYILRNMV 228
             + +H  D   T   I +  Y E+H + R+L++ FG  +      ++ + + Y+L    
Sbjct: 185 LTMFSHMLDGFETFFGISYLGYWELHVLPRYLIDKFGPISLPAAKFLVFYAILYLLDTSE 244

Query: 229 PDGDERNYWYLAIYILGLGPAIRDPAQMV 257
            D   RNY    + +LGL P +RD  +M+
Sbjct: 245 EDKKLRNYVKFVLVVLGLAPGLRDGIRMM 273


>sp|Q57882|Y440_METJA HYPOTHETICAL PROTEIN MJ0440 >gi|2128325|pir||H64354 hypothetical
           protein MJ0440 - Methanococcus jannaschii
           >gi|1591144|gb|AAB98427.1| (U67495) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 299
           
 Score =  108 bits (267), Expect = 8e-23
 Identities = 76/273 (27%), Positives = 127/273 (45%), Gaps = 23/273 (8%)

Query: 2   DVHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAVT 61
           ++  F+++Y+I P     GYN +  + Y +I   A+   YK  ++ L I +DE+  +   
Sbjct: 36  EIKNFIYKYYIEPAEKGTGYNIVQEITYGIILALALYLFYK-ALRKLNINIDEKFAIPGI 94

Query: 62  PMVIFGSTVRALVDGGILKPNPWILTPGI-FFTAFFLILPALFLDVKLK-LYPKLTIAWG 119
              +  + +RALVD G ++ +   +TPGI F    F IL  L   +  K  Y K +   G
Sbjct: 95  VFTVLIALMRALVDCGYIERSFLTITPGIVFLIGGFFILTILTTGLVFKEKYYKASAVIG 154

Query: 120 TLLAGYANYLLIINAKCWKPYELTLLHTL--VSFVVVFAFYKVRPFERLYL--------- 168
            +L  Y  ++ +          +T L  +  V  +V   +Y V+  ++            
Sbjct: 155 LILLLYFLFVFL--------QHITHLEAILYVGILVGIFYYLVKFLDKTLKLNIIQSKID 206

Query: 169 -YPVLAHYFDIASTVVAIHFYSYMEVHWVERHLVNAFGAYAYYPWITVILFLVYYILRNM 227
            Y V+    D ++T + I  Y Y E H + R L+  FG YA+ P+  +I+ L  YIL   
Sbjct: 207 DYVVIGQLIDASATTIGIGVYGYWEQHPIPRFLMETFGVYAFIPFKLLIILLALYILNKE 266

Query: 228 VPDGDERNYWYLAIYILGLGPAIRDPAQMVLQI 260
           V D + +N   L I  LGL P +RD  + V+ +
Sbjct: 267 VEDENIKNIIKLCIMALGLAPGLRDLFRTVMGV 299


>pir||C69064 conserved hypothetical protein MTH1480 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622595|gb|AAB85955.1| (AE000908) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 263
           
 Score = 96.7 bits (237), Expect = 3e-19
 Identities = 81/261 (31%), Positives = 123/261 (47%), Gaps = 19/261 (7%)

Query: 2   DVHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAVT 61
           ++ +FL   F    Y   GY P+NTVV+ ++ G AV+   + + + LK K    L + + 
Sbjct: 4   EIIEFLESNFF---YLHPGYTPLNTVVFGIVLGIAVLIILR-MFRWLK-KDPGELLVPLL 58

Query: 62  PMVIFGSTVRALVDGGILKPNPWILTPGIFFTAFFLILPALFLDVKLKL-----YPKLTI 116
           P +  GS  RALVD GI      ++TPGI+       +  L   VKL+      Y KL  
Sbjct: 59  PFIFLGSGARALVDNGIYPLTHLLVTPGIYILVGLTTIATLIAAVKLEETRGWDYRKLIF 118

Query: 117 AWGTLLAGYANYLLIINAKCWKPYELTLLHTLVSFVVVFAFYKVRPFE----RLYLYPVL 172
           A G++LA  A  L+ I      P+ L++L     F   F    +R +E    R+ L  + 
Sbjct: 119 ATGSVLA--APNLISIRHIDPVPF-LSVLGVFSVFSAAFYALSLR-WEFLRGRMNLPVIY 174

Query: 173 AHYFDIASTVVAIHFYSYMEVHWVERHLVNAFG-AYAYYPWITVILFLVYYILRNMVPDG 231
           AH FD +ST VA+ +Y Y+E H +   L    G A   +P    ++    Y +   V   
Sbjct: 175 AHLFDASSTYVAVDWYGYIEQHVLPSALTGLTGTAMVMFPLKMAVILTALYAIDRYVESD 234

Query: 232 DERNYWYLAIYILGLGPAIRD 252
            +     L I+ILGL P +R+
Sbjct: 235 MDSEALKLVIFILGLAPGLRN 255


>sp|P29085|YFUS_PYRWO HYPOTHETICAL 12.3 KD PROTEIN IN FUS 3'REGION >gi|99236|pir||S23865
           hypothetical protein (fus 3' region) - Pyrococcus woesei
           >gi|45951|emb|CAA47642.1| (X67205) ORF [Pyrococcus
           woesei]
           Length = 106
           
 Score = 82.3 bits (200), Expect = 6e-15
 Identities = 40/97 (41%), Positives = 60/97 (61%), Gaps = 5/97 (5%)

Query: 3   VHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAVTP 62
           + +F  +YFI P+    GYNP+NT+VYA+I G A +  YK V+K LKI+++   F A+ P
Sbjct: 5   IREFFQKYFIDPIKYNTGYNPVNTLVYAIILGIATLLVYK-VLKRLKIEINNAFFRALIP 63

Query: 63  MVIFGSTVRALVDGGILKP----NPWILTPGIFFTAF 95
            +IFG+  RAL D G+ +      PW + PG+  + F
Sbjct: 64  YMIFGAFTRALTDAGVFRELISLFPWDILPGLCNSIF 100


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.332    0.148    0.484 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103219086
Number of Sequences: 2977
Number of extensions: 4371231
Number of successful extensions: 11512
Number of sequences better than 1.0e-10: 8
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 11495
Number of HSP's gapped (non-prelim): 8
length of query: 263
length of database: 189,106,746
effective HSP length: 46
effective length of query: 217
effective length of database: 161,576,344
effective search space: 35062066648
effective search space used: 35062066648
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 164 (68.3 bits)