BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0078 (PAB0078) DE:Hypothetical protein
(263 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75200 hypothetical protein PAB0078 - Pyrococcus abyssi (st... 551 e-156
pir||G71233 hypothetical protein PH0129 - Pyrococcus horikoshii ... 480 e-135
pir||B75219 hypothetical protein PAB0188 - Pyrococcus abyssi (st... 132 3e-30
pir||F71203 hypothetical protein PH1898 - Pyrococcus horikoshii ... 125 6e-28
gi|11498074 conserved hypothetical transmembrane protein [Archae... 109 5e-23
sp|Q57882|Y440_METJA HYPOTHETICAL PROTEIN MJ0440 >gi|2128325|pir... 108 8e-23
pir||C69064 conserved hypothetical protein MTH1480 - Methanobact... 97 3e-19
sp|P29085|YFUS_PYRWO HYPOTHETICAL 12.3 KD PROTEIN IN FUS 3'REGIO... 82 6e-15
>pir||D75200 hypothetical protein PAB0078 - Pyrococcus abyssi (strain Orsay)
>gi|5457560|emb|CAB49051.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 263
Score = 551 bits (1404), Expect = e-156
Identities = 263/263 (100%), Positives = 263/263 (100%)
Query: 1 MDVHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAV 60
MDVHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAV
Sbjct: 1 MDVHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAV 60
Query: 61 TPMVIFGSTVRALVDGGILKPNPWILTPGIFFTAFFLILPALFLDVKLKLYPKLTIAWGT 120
TPMVIFGSTVRALVDGGILKPNPWILTPGIFFTAFFLILPALFLDVKLKLYPKLTIAWGT
Sbjct: 61 TPMVIFGSTVRALVDGGILKPNPWILTPGIFFTAFFLILPALFLDVKLKLYPKLTIAWGT 120
Query: 121 LLAGYANYLLIINAKCWKPYELTLLHTLVSFVVVFAFYKVRPFERLYLYPVLAHYFDIAS 180
LLAGYANYLLIINAKCWKPYELTLLHTLVSFVVVFAFYKVRPFERLYLYPVLAHYFDIAS
Sbjct: 121 LLAGYANYLLIINAKCWKPYELTLLHTLVSFVVVFAFYKVRPFERLYLYPVLAHYFDIAS 180
Query: 181 TVVAIHFYSYMEVHWVERHLVNAFGAYAYYPWITVILFLVYYILRNMVPDGDERNYWYLA 240
TVVAIHFYSYMEVHWVERHLVNAFGAYAYYPWITVILFLVYYILRNMVPDGDERNYWYLA
Sbjct: 181 TVVAIHFYSYMEVHWVERHLVNAFGAYAYYPWITVILFLVYYILRNMVPDGDERNYWYLA 240
Query: 241 IYILGLGPAIRDPAQMVLQIACQ 263
IYILGLGPAIRDPAQMVLQIACQ
Sbjct: 241 IYILGLGPAIRDPAQMVLQIACQ 263
>pir||G71233 hypothetical protein PH0129 - Pyrococcus horikoshii
>gi|3256515|dbj|BAA29198.1| (AP000001) 267aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 267
Score = 480 bits (1223), Expect = e-135
Identities = 221/263 (84%), Positives = 241/263 (91%)
Query: 1 MDVHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAV 60
+++HQF WEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKY+IKPLKIKVDERLFLAV
Sbjct: 5 VNLHQFFWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYIIKPLKIKVDERLFLAV 64
Query: 61 TPMVIFGSTVRALVDGGILKPNPWILTPGIFFTAFFLILPALFLDVKLKLYPKLTIAWGT 120
TPMVIFGST+RALVDGG+L PNPWILTPGIFFTAFFLILP LF DVKLKLYPKLTIAWG+
Sbjct: 65 TPMVIFGSTIRALVDGGVLAPNPWILTPGIFFTAFFLILPVLFADVKLKLYPKLTIAWGS 124
Query: 121 LLAGYANYLLIINAKCWKPYELTLLHTLVSFVVVFAFYKVRPFERLYLYPVLAHYFDIAS 180
LLA YANYLLIIN KCWKPYELTLLH LVSF VV A+YK +PFE+LYLYP LAHYFDIAS
Sbjct: 125 LLAIYANYLLIINVKCWKPYELTLLHALVSFAVVLAYYKFKPFEKLYLYPTLAHYFDIAS 184
Query: 181 TVVAIHFYSYMEVHWVERHLVNAFGAYAYYPWITVILFLVYYILRNMVPDGDERNYWYLA 240
TVVAIHFY Y EVHWVE++LV FGAYAYYPWIT+IL +VYY+L+ +V D +ER YWYLA
Sbjct: 185 TVVAIHFYGYREVHWVEKYLVGMFGAYAYYPWITIILIIVYYVLKELVLDPEERYYWYLA 244
Query: 241 IYILGLGPAIRDPAQMVLQIACQ 263
+YILGLGP IRDPAQMVLQI C+
Sbjct: 245 VYILGLGPGIRDPAQMVLQIPCR 267
>pir||B75219 hypothetical protein PAB0188 - Pyrococcus abyssi (strain Orsay)
>gi|5457710|emb|CAB49201.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 267
Score = 132 bits (330), Expect = 3e-30
Identities = 84/268 (31%), Positives = 136/268 (50%), Gaps = 18/268 (6%)
Query: 6 FLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAVTPMVI 65
F +YF+ P+ GYNP+NT+ YA+I G A I YK V+K L+IK+D F A+ P +I
Sbjct: 5 FFRKYFVNPIKYNTGYNPVNTLTYAVILGLATILVYK-VLKRLRIKIDNAFFRALIPYMI 63
Query: 66 FGSTVRALVDGGILKPNPWILTPGIFFTAFFLILPALFLDVKLKLYPK---LTIAWGTLL 122
FG+ RAL D G+ ++PGI+F F + PAL + + + L+ WG +L
Sbjct: 64 FGAFTRALTDAGVFPRTYITVSPGIYFLVFSIAFPALLISHRFFKDWRGVFLSFGWGLVL 123
Query: 123 AGYANYLLIINAKCWK-PYELTLLHTLVSFVVVFAFYKVRPFERLYL-----YPVLAHYF 176
A ++A K + L +L + FV++ R+YL Y H++
Sbjct: 124 VDVA----ALSANIGKVSFRLEVLKYFIPFVIIAELVIYLLSRRVYLIRKNSYLFYVHFY 179
Query: 177 DIASTVVAIHFYSYMEVHWVERHLVNAFG-AYAYYPWITVILFLVYYILRNMVPDGDER- 234
D +T V + F Y E H V R L+ G A Y ILF+ +I+ + +G+++
Sbjct: 180 DATTTFVGVDFMGYWEQHVVPRLLIGLTGTAAVMYVLKFSILFIALWIMEKLEKEGEDKE 239
Query: 235 --NYWYLAIYILGLGPAIRDPAQMVLQI 260
++ + I+ILG P R+ +M++ +
Sbjct: 240 LLDFIRMVIFILGFAPGTRNLLRMLMGV 267
>pir||F71203 hypothetical protein PH1898 - Pyrococcus horikoshii
>gi|3258338|dbj|BAA31021.1| (AP000007) 267aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 267
Score = 125 bits (311), Expect = 6e-28
Identities = 81/267 (30%), Positives = 130/267 (48%), Gaps = 10/267 (3%)
Query: 3 VHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAVTP 62
+ F +YF+ P+ GYNP+NT+ YA+I G A I YK +K LKIK+D F A+ P
Sbjct: 2 LRDFFEKYFVNPIKYNTGYNPVNTLTYAIILGIATILVYKG-LKKLKIKIDNAFFRALVP 60
Query: 63 MVIFGSTVRALVDGGILKPNPWILTPGIFFTAFFLILPALFLDVK-LKLYPKL--TIAWG 119
+IFG+ RAL D + ++PGI+F + PAL + K K + ++ WG
Sbjct: 61 YMIFGAFTRALTDASVFPRTYITVSPGIYFLVSLIATPALLIPYKFFKDWRRVFSLFGWG 120
Query: 120 TLLAGYANYLLIINAKCWKPYELTLLHTLVSF--VVVFAFYKVRPFERLYLYPVLAHYFD 177
+L A L+ + + L V+ VV++ K R Y H++D
Sbjct: 121 LVLIDVAALLVNLQKVTFNFQVLKYFIPFVTIAEVVIYLLTKKLSIVRDNSYLFYVHFYD 180
Query: 178 IASTVVAIHFYSYMEVHWVERHLVNAFG-AYAYYPWITVILFLVYYILRNMVPDGDER-- 234
+T V + F Y E H V R L+ G A Y V+L+ +I+ + +G+E
Sbjct: 181 ATTTFVGVDFMGYWEQHVVPRFLIGLTGTAAVMYVLKFVVLYTALWIMVKLEEEGEEEEL 240
Query: 235 -NYWYLAIYILGLGPAIRDPAQMVLQI 260
++ + I+ILG P R+ +M++ +
Sbjct: 241 LDFIKMVIFILGFAPGTRNLLRMLMGV 267
>gi|11498074 conserved hypothetical transmembrane protein [Archaeoglobus
fulgidus] >gi|7483261|pir||F69307 conserved hypothetical
transmembrane protein AF0462 - Archaeoglobus fulgidus
>gi|2650167|gb|AAB90775.1| (AE001073) conserved
hypothetical transmembrane protein [Archaeoglobus
fulgidus]
Length = 276
Score = 109 bits (269), Expect = 5e-23
Identities = 79/269 (29%), Positives = 133/269 (49%), Gaps = 20/269 (7%)
Query: 1 MDVHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAV 60
MD+ +F+ EY+I + +EGYN +NT+ +A I AV Y+++ K ++ DE+ A
Sbjct: 13 MDLWEFIKEYYIDSIVYKEGYNIVNTLTWAAILIVAVYALYRFLGK--RLDFDEKFVYAN 70
Query: 61 TPMVIFGSTVRALVDGGILKP--NPWILTPGIFFTAFFLILPALFLDVKL---KLYPKLT 115
P ++ GS+VR + D G L P + +TP I+ F + P L L ++ K Y
Sbjct: 71 IPYILLGSSVRVVEDAGFLTPPISYIFMTPFIYILIFAIAFPTLLLSLRFYGEKYYRVYA 130
Query: 116 I-----AWGTLLAGYANYLLIINAKCWK-PYELTLLHTLVSFVVVFAFYKVRPFER-LYL 168
+ A G L+ +AN L ++N W P + L +F VF ++P + L L
Sbjct: 131 VVGLVPAVGVLILLFAN-LPVVN--WWVIPAGVGLA---AAFTAVFYAISLKPMKNELSL 184
Query: 169 YPVLAHYFDIASTVVAIHFYSYMEVHWVERHLVNAFGAYAYYPWITVILFLVYYILRNMV 228
+ +H D T I + Y E+H + R+L++ FG + ++ + + Y+L
Sbjct: 185 LTMFSHMLDGFETFFGISYLGYWELHVLPRYLIDKFGPISLPAAKFLVFYAILYLLDTSE 244
Query: 229 PDGDERNYWYLAIYILGLGPAIRDPAQMV 257
D RNY + +LGL P +RD +M+
Sbjct: 245 EDKKLRNYVKFVLVVLGLAPGLRDGIRMM 273
>sp|Q57882|Y440_METJA HYPOTHETICAL PROTEIN MJ0440 >gi|2128325|pir||H64354 hypothetical
protein MJ0440 - Methanococcus jannaschii
>gi|1591144|gb|AAB98427.1| (U67495) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 299
Score = 108 bits (267), Expect = 8e-23
Identities = 76/273 (27%), Positives = 127/273 (45%), Gaps = 23/273 (8%)
Query: 2 DVHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAVT 61
++ F+++Y+I P GYN + + Y +I A+ YK ++ L I +DE+ +
Sbjct: 36 EIKNFIYKYYIEPAEKGTGYNIVQEITYGIILALALYLFYK-ALRKLNINIDEKFAIPGI 94
Query: 62 PMVIFGSTVRALVDGGILKPNPWILTPGI-FFTAFFLILPALFLDVKLK-LYPKLTIAWG 119
+ + +RALVD G ++ + +TPGI F F IL L + K Y K + G
Sbjct: 95 VFTVLIALMRALVDCGYIERSFLTITPGIVFLIGGFFILTILTTGLVFKEKYYKASAVIG 154
Query: 120 TLLAGYANYLLIINAKCWKPYELTLLHTL--VSFVVVFAFYKVRPFERLYL--------- 168
+L Y ++ + +T L + V +V +Y V+ ++
Sbjct: 155 LILLLYFLFVFL--------QHITHLEAILYVGILVGIFYYLVKFLDKTLKLNIIQSKID 206
Query: 169 -YPVLAHYFDIASTVVAIHFYSYMEVHWVERHLVNAFGAYAYYPWITVILFLVYYILRNM 227
Y V+ D ++T + I Y Y E H + R L+ FG YA+ P+ +I+ L YIL
Sbjct: 207 DYVVIGQLIDASATTIGIGVYGYWEQHPIPRFLMETFGVYAFIPFKLLIILLALYILNKE 266
Query: 228 VPDGDERNYWYLAIYILGLGPAIRDPAQMVLQI 260
V D + +N L I LGL P +RD + V+ +
Sbjct: 267 VEDENIKNIIKLCIMALGLAPGLRDLFRTVMGV 299
>pir||C69064 conserved hypothetical protein MTH1480 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622595|gb|AAB85955.1| (AE000908) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 263
Score = 96.7 bits (237), Expect = 3e-19
Identities = 81/261 (31%), Positives = 123/261 (47%), Gaps = 19/261 (7%)
Query: 2 DVHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAVT 61
++ +FL F Y GY P+NTVV+ ++ G AV+ + + + LK K L + +
Sbjct: 4 EIIEFLESNFF---YLHPGYTPLNTVVFGIVLGIAVLIILR-MFRWLK-KDPGELLVPLL 58
Query: 62 PMVIFGSTVRALVDGGILKPNPWILTPGIFFTAFFLILPALFLDVKLKL-----YPKLTI 116
P + GS RALVD GI ++TPGI+ + L VKL+ Y KL
Sbjct: 59 PFIFLGSGARALVDNGIYPLTHLLVTPGIYILVGLTTIATLIAAVKLEETRGWDYRKLIF 118
Query: 117 AWGTLLAGYANYLLIINAKCWKPYELTLLHTLVSFVVVFAFYKVRPFE----RLYLYPVL 172
A G++LA A L+ I P+ L++L F F +R +E R+ L +
Sbjct: 119 ATGSVLA--APNLISIRHIDPVPF-LSVLGVFSVFSAAFYALSLR-WEFLRGRMNLPVIY 174
Query: 173 AHYFDIASTVVAIHFYSYMEVHWVERHLVNAFG-AYAYYPWITVILFLVYYILRNMVPDG 231
AH FD +ST VA+ +Y Y+E H + L G A +P ++ Y + V
Sbjct: 175 AHLFDASSTYVAVDWYGYIEQHVLPSALTGLTGTAMVMFPLKMAVILTALYAIDRYVESD 234
Query: 232 DERNYWYLAIYILGLGPAIRD 252
+ L I+ILGL P +R+
Sbjct: 235 MDSEALKLVIFILGLAPGLRN 255
>sp|P29085|YFUS_PYRWO HYPOTHETICAL 12.3 KD PROTEIN IN FUS 3'REGION >gi|99236|pir||S23865
hypothetical protein (fus 3' region) - Pyrococcus woesei
>gi|45951|emb|CAA47642.1| (X67205) ORF [Pyrococcus
woesei]
Length = 106
Score = 82.3 bits (200), Expect = 6e-15
Identities = 40/97 (41%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
Query: 3 VHQFLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAVTP 62
+ +F +YFI P+ GYNP+NT+VYA+I G A + YK V+K LKI+++ F A+ P
Sbjct: 5 IREFFQKYFIDPIKYNTGYNPVNTLVYAIILGIATLLVYK-VLKRLKIEINNAFFRALIP 63
Query: 63 MVIFGSTVRALVDGGILKP----NPWILTPGIFFTAF 95
+IFG+ RAL D G+ + PW + PG+ + F
Sbjct: 64 YMIFGAFTRALTDAGVFRELISLFPWDILPGLCNSIF 100
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.332 0.148 0.484
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103219086
Number of Sequences: 2977
Number of extensions: 4371231
Number of successful extensions: 11512
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 11495
Number of HSP's gapped (non-prelim): 8
length of query: 263
length of database: 189,106,746
effective HSP length: 46
effective length of query: 217
effective length of database: 161,576,344
effective search space: 35062066648
effective search space used: 35062066648
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 164 (68.3 bits)