BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0079 (PAB0079) DE:Hypothetical protein
         (235 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75200 hypothetical protein PAB0079 - Pyrococcus abyssi (st...   463  e-129
pir||H71233 hypothetical protein PH0130 - Pyrococcus horikoshii ...   280  1e-74

>pir||E75200 hypothetical protein PAB0079 - Pyrococcus abyssi (strain Orsay)
           >gi|5457561|emb|CAB49052.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 235
           
 Score =  463 bits (1178), Expect = e-129
 Identities = 235/235 (100%), Positives = 235/235 (100%)

Query: 1   MMSTRLAETENVKYILGEKYVMFERISSANTFEPFGELSNIIGGIREGDTAGVIVTDQLS 60
           MMSTRLAETENVKYILGEKYVMFERISSANTFEPFGELSNIIGGIREGDTAGVIVTDQLS
Sbjct: 1   MMSTRLAETENVKYILGEKYVMFERISSANTFEPFGELSNIIGGIREGDTAGVIVTDQLS 60

Query: 61  HAYFLHLALSNFQGNSYYLDVSSRVSPQIVSSLGGNPDMVFFGKVYSINDVFSALNYVQP 120
           HAYFLHLALSNFQGNSYYLDVSSRVSPQIVSSLGGNPDMVFFGKVYSINDVFSALNYVQP
Sbjct: 61  HAYFLHLALSNFQGNSYYLDVSSRVSPQIVSSLGGNPDMVFFGKVYSINDVFSALNYVQP 120

Query: 121 GSLLIVGSLNLLNPSTEDVLNLRKIVHEKGLFAIVLVEEQALNELDLLGESRRLLLIPEL 180
           GSLLIVGSLNLLNPSTEDVLNLRKIVHEKGLFAIVLVEEQALNELDLLGESRRLLLIPEL
Sbjct: 121 GSLLIVGSLNLLNPSTEDVLNLRKIVHEKGLFAIVLVEEQALNELDLLGESRRLLLIPEL 180

Query: 181 YEQVLIGRINHYRGKYKLTVTVLRNYPEKLDSLGDHEIVIDEEVRKILSLGTEGQ 235
           YEQVLIGRINHYRGKYKLTVTVLRNYPEKLDSLGDHEIVIDEEVRKILSLGTEGQ
Sbjct: 181 YEQVLIGRINHYRGKYKLTVTVLRNYPEKLDSLGDHEIVIDEEVRKILSLGTEGQ 235


>pir||H71233 hypothetical protein PH0130 - Pyrococcus horikoshii
           >gi|3256516|dbj|BAA29199.1| (AP000001) 218aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 218
           
 Score =  280 bits (708), Expect = 1e-74
 Identities = 131/215 (60%), Positives = 172/215 (79%)

Query: 21  VMFERISSANTFEPFGELSNIIGGIREGDTAGVIVTDQLSHAYFLHLALSNFQGNSYYLD 80
           +MFE++ S   F PF +LS  IGG+REGD  G++VTDQLSHAYFLHLA+S+F G SYYLD
Sbjct: 1   MMFEKLESPKEFSPFKDLSKKIGGLREGDLVGIVVTDQLSHAYFLHLAVSSFPGFSYYLD 60

Query: 81  VSSRVSPQIVSSLGGNPDMVFFGKVYSINDVFSALNYVQPGSLLIVGSLNLLNPSTEDVL 140
           +SSR+S  ++SSLGG+P  +FFG+VY++ D+ S++ YV   SL +VGSLN L+P  ED+L
Sbjct: 61  LSSRLSMDVLSSLGGDPGRIFFGRVYTMGDIISSIKYVSENSLFVVGSLNALDPRKEDIL 120

Query: 141 NLRKIVHEKGLFAIVLVEEQALNELDLLGESRRLLLIPELYEQVLIGRINHYRGKYKLTV 200
            L+  + EK L+ +VL+EEQ LNEL+L GE RRLL++PE++EQ+L+GRI++YRGKYKLTV
Sbjct: 121 ALKSEISEKTLYGMVLIEEQNLNELNLPGEIRRLLIVPEVFEQILVGRISYYRGKYKLTV 180

Query: 201 TVLRNYPEKLDSLGDHEIVIDEEVRKILSLGTEGQ 235
           TVLR YP+KL SLGDHE  +DEEV+KIL    EGQ
Sbjct: 181 TVLRAYPDKLSSLGDHEFTVDEEVKKILFPNREGQ 215


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.139    0.383 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84773358
Number of Sequences: 2977
Number of extensions: 3521366
Number of successful extensions: 8404
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8402
Number of HSP's gapped (non-prelim): 2
length of query: 235
length of database: 189,106,746
effective HSP length: 57
effective length of query: 178
effective length of database: 154,992,987
effective search space: 27588751686
effective search space used: 27588751686
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)