BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0080 128515 129042 176 !not a gene!
         (176 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C71234 hypothetical protein PH0133 - Pyrococcus horikoshii ...   208  2e-53

>pir||C71234 hypothetical protein PH0133 - Pyrococcus horikoshii
           >gi|3256519|dbj|BAA29202.1| (AP000001) 139aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 139
           
 Score =  208 bits (525), Expect = 2e-53
 Identities = 106/137 (77%), Positives = 113/137 (82%)

Query: 40  PKNLISPSLRSKTSSATSRTSSISWVTRIIEWLSSLNFLMTLISPLNPLSSNPVFGSSRT 99
           PKN  SPS +SKT SATS TSS+SWVT IIE  S L FLMTLI   +PLSS+PVFGSSRT
Sbjct: 3   PKNFSSPSFKSKTLSATSSTSSMSWVTNIIELPSLLKFLMTLIRSWSPLSSSPVFGSSRT 62

Query: 100 RYLGFIAKMHAIASLCFSPPLSSRGLLSSNPSRPTSLKAHLTLFSTSSSLNPRFLGPKAT 159
           RY GFIAKMHAIASLCFSPPLSS G L SNP  PT+ +AHLTLF TSSSL P+F GPKAT
Sbjct: 63  RYFGFIAKMHAIASLCFSPPLSSNGFLFSNPLSPTASRAHLTLFLTSSSLRPKFFGPKAT 122

Query: 160 SLNTFSSKNIASGFWNT 176
           SL TFSSKNIASGFWNT
Sbjct: 123 SLKTFSSKNIASGFWNT 139


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.125    0.350 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57736130
Number of Sequences: 2977
Number of extensions: 1990289
Number of successful extensions: 6740
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6739
Number of HSP's gapped (non-prelim): 1
length of query: 176
length of database: 189,106,746
effective HSP length: 61
effective length of query: 115
effective length of database: 152,599,039
effective search space: 17548889485
effective search space used: 17548889485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 162 (67.5 bits)