BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0082 (PAB0082) DE:Hypothetical protein
         (570 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75201 hypothetical protein PAB0082 - Pyrococcus abyssi (st...  1159  0.0
pir||E71234 hypothetical protein PH0135 - Pyrococcus horikoshii ...  1019  0.0
pir||E69089 conserved hypothetical protein MTH1665 - Methanobact...   192  9e-48
sp|Q58428|YA22_METJA HYPOTHETICAL PROTEIN MJ1022 >gi|2128635|pir...   184  2e-45
gi|11498195 conserved hypothetical protein [Archaeoglobus fulgid...   159  1e-37
emb|CAC12053.1| (AL445065) conserved hypothetical protein [Therm...   155  9e-37
gb|AAG20138.1| (AE005092) archaeosine tRNA-ribosyltransferase; T...   135  1e-30
gb|AAF97200.1|AF268611_25 (AF268611) queuine tRNA-ribosyltransfe...    92  1e-17

>pir||A75201 hypothetical protein PAB0082 - Pyrococcus abyssi (strain Orsay)
           >gi|5457565|emb|CAB49056.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 570
           
 Score = 1159 bits (2965), Expect = 0.0
 Identities = 570/570 (100%), Positives = 570/570 (100%)

Query: 1   MEVVKHDGPGRLGVIRLEPPVQTPALAGVDFTLSPFNSYFHPKEFSEYDFNLAPAIPLSY 60
           MEVVKHDGPGRLGVIRLEPPVQTPALAGVDFTLSPFNSYFHPKEFSEYDFNLAPAIPLSY
Sbjct: 1   MEVVKHDGPGRLGVIRLEPPVQTPALAGVDFTLSPFNSYFHPKEFSEYDFNLAPAIPLSY 60

Query: 61  YTPDEVIEKALRRIESQDYSKFNAFYFPALKREKYYDMLIKIIEDNDFEAIYIGNSKVMI 120
           YTPDEVIEKALRRIESQDYSKFNAFYFPALKREKYYDMLIKIIEDNDFEAIYIGNSKVMI
Sbjct: 61  YTPDEVIEKALRRIESQDYSKFNAFYFPALKREKYYDMLIKIIEDNDFEAIYIGNSKVMI 120

Query: 121 KDYRGFVSTVRILREKFPNAILITDLEPFFYPLAVYLGIDAFDVRSLKIYFYEGLGFTQF 180
           KDYRGFVSTVRILREKFPNAILITDLEPFFYPLAVYLGIDAFDVRSLKIYFYEGLGFTQF
Sbjct: 121 KDYRGFVSTVRILREKFPNAILITDLEPFFYPLAVYLGIDAFDVRSLKIYFYEGLGFTQF 180

Query: 181 SPIIWDRPRDPIEFAKEMIKLVKIAIEEGKLRYLVENFLPTAMNAGILRIADREHWDYLE 240
           SPIIWDRPRDPIEFAKEMIKLVKIAIEEGKLRYLVENFLPTAMNAGILRIADREHWDYLE
Sbjct: 181 SPIIWDRPRDPIEFAKEMIKLVKIAIEEGKLRYLVENFLPTAMNAGILRIADREHWDYLE 240

Query: 241 KYTPVHDKTVVFISDHSMTRPEVIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSH 300
           KYTPVHDKTVVFISDHSMTRPEVIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSH
Sbjct: 241 KYTPVHDKTVVFISDHSMTRPEVIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSH 300

Query: 301 MLFRKAMKDALGEKLHRVHELIVTSPYGVVPREWEWLAKYDIVVTGHWSDEEVKFAGELL 360
           MLFRKAMKDALGEKLHRVHELIVTSPYGVVPREWEWLAKYDIVVTGHWSDEEVKFAGELL
Sbjct: 301 MLFRKAMKDALGEKLHRVHELIVTSPYGVVPREWEWLAKYDIVVTGHWSDEEVKFAGELL 360

Query: 361 ASTLDKYPDVPIIAHVEGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKKLEATLREF 420
           ASTLDKYPDVPIIAHVEGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKKLEATLREF
Sbjct: 361 ASTLDKYPDVPIIAHVEGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKKLEATLREF 420

Query: 421 DVRDVDKEYRRYRFYENIRKVFDYYFGLGAGNEVLPDGAQVIGSKMLRLIFKNSQTGTFQ 480
           DVRDVDKEYRRYRFYENIRKVFDYYFGLGAGNEVLPDGAQVIGSKMLRLIFKNSQTGTFQ
Sbjct: 421 DVRDVDKEYRRYRFYENIRKVFDYYFGLGAGNEVLPDGAQVIGSKMLRLIFKNSQTGTFQ 480

Query: 481 EGVISVTPFGMQRIYDGLNAYWVEIDFEIRGDIFAAGVERADSRIRPNDIVGVVKDGKVV 540
           EGVISVTPFGMQRIYDGLNAYWVEIDFEIRGDIFAAGVERADSRIRPNDIVGVVKDGKVV
Sbjct: 481 EGVISVTPFGMQRIYDGLNAYWVEIDFEIRGDIFAAGVERADSRIRPNDIVGVVKDGKVV 540

Query: 541 GVGRAVLSGEEMVKAKKGIAVRVRKRAKSL 570
           GVGRAVLSGEEMVKAKKGIAVRVRKRAKSL
Sbjct: 541 GVGRAVLSGEEMVKAKKGIAVRVRKRAKSL 570


>pir||E71234 hypothetical protein PH0135 - Pyrococcus horikoshii
           >gi|3256521|dbj|BAA29204.1| (AP000001) 570aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 570
           
 Score = 1019 bits (2606), Expect = 0.0
 Identities = 473/569 (83%), Positives = 536/569 (94%)

Query: 1   MEVVKHDGPGRLGVIRLEPPVQTPALAGVDFTLSPFNSYFHPKEFSEYDFNLAPAIPLSY 60
           MEV+KHDGPGRLGVIRLEPPVQTPALAGVDFT+SPFNSYF+PKE+ +YDFNLAP+IPLSY
Sbjct: 1   MEVIKHDGPGRLGVIRLEPPVQTPALAGVDFTISPFNSYFNPKEYHDYDFNLAPSIPLSY 60

Query: 61  YTPDEVIEKALRRIESQDYSKFNAFYFPALKREKYYDMLIKIIEDNDFEAIYIGNSKVMI 120
           YTPDEVIEKAL+RIE+ DYSKFN FYFPALKR+KYY   +++IE+NDF+AIYIGNSKVMI
Sbjct: 61  YTPDEVIEKALKRIETVDYSKFNTFYFPALKRDKYYPRFVELIEENDFDAIYIGNSKVMI 120

Query: 121 KDYRGFVSTVRILREKFPNAILITDLEPFFYPLAVYLGIDAFDVRSLKIYFYEGLGFTQF 180
           KDYRGFV+T+RILREKFPNA+LITDLEPFFYPLAVYLG+DAFDVRSLKIY YEGLGFT F
Sbjct: 121 KDYRGFVATLRILREKFPNAVLITDLEPFFYPLAVYLGVDAFDVRSLKIYSYEGLGFTPF 180

Query: 181 SPIIWDRPRDPIEFAKEMIKLVKIAIEEGKLRYLVENFLPTAMNAGILRIADREHWDYLE 240
           SP+IWDRP DPIEFA+EMIK++KIAI+EGKLRYLVENFLPT MN GILRIAD+EH DYLE
Sbjct: 181 SPVIWDRPNDPIEFAREMIKIIKIAIQEGKLRYLVENFLPTVMNVGILRIADKEHGDYLE 240

Query: 241 KYTPVHDKTVVFISDHSMTRPEVIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSH 300
           KYTPVHDKTVVFIS+HS++RPEV RW+KR++ERFEPP GIDLLLIFPCSAKKPYSRSRSH
Sbjct: 241 KYTPVHDKTVVFISEHSISRPEVFRWRKRIEERFEPPKGIDLLLIFPCSAKKPYSRSRSH 300

Query: 301 MLFRKAMKDALGEKLHRVHELIVTSPYGVVPREWEWLAKYDIVVTGHWSDEEVKFAGELL 360
           M++RK MK+ALGEK+HRVHEL+VTSPYGVVPREWEWLAKYDIVVTGHWS+ EV+FAGELL
Sbjct: 301 MMYRKVMKEALGEKVHRVHELVVTSPYGVVPREWEWLAKYDIVVTGHWSESEVRFAGELL 360

Query: 361 ASTLDKYPDVPIIAHVEGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKKLEATLREF 420
           A T++KYPD+PI+AHVEGGY+EAV+YAMEL NR+VIFTAVG ST SK+SL KL+ TL+EF
Sbjct: 361 AQTIEKYPDIPIVAHVEGGYREAVKYAMELVNRDVIFTAVGSSTISKESLDKLKKTLKEF 420

Query: 421 DVRDVDKEYRRYRFYENIRKVFDYYFGLGAGNEVLPDGAQVIGSKMLRLIFKNSQTGTFQ 480
           D+RD +K+YRRYRFYEN+RKVFDYYFGLGAG  VLP+ AQ++GSKMLRLI  NSQTGTFQ
Sbjct: 421 DLRDAEKDYRRYRFYENVRKVFDYYFGLGAGEAVLPENAQIVGSKMLRLIVNNSQTGTFQ 480

Query: 481 EGVISVTPFGMQRIYDGLNAYWVEIDFEIRGDIFAAGVERADSRIRPNDIVGVVKDGKVV 540
           EGVISVTPFGMQRIYD LN+YWVE+DF+IRGD+FAAGVERAD  IRPNDIVG+V+DG+VV
Sbjct: 481 EGVISVTPFGMQRIYDKLNSYWVEVDFDIRGDVFAAGVERADEGIRPNDIVGIVRDGRVV 540

Query: 541 GVGRAVLSGEEMVKAKKGIAVRVRKRAKS 569
            VGRAVLSGEEMV+AKKGIAVRVRKR K+
Sbjct: 541 AVGRAVLSGEEMVRAKKGIAVRVRKRVKN 569


>pir||E69089 conserved hypothetical protein MTH1665 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622794|gb|AAB86137.1| (AE000925) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 309
           
 Score =  192 bits (483), Expect = 9e-48
 Identities = 126/325 (38%), Positives = 188/325 (57%), Gaps = 34/325 (10%)

Query: 250 VVFISDHSMTRPEVIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSHMLFRKAMKD 309
           V+   + S+ RPE +RW++R+  R   P G D++++ PCS KKPYS SRSH  F    + 
Sbjct: 9   VICSIEESLHRPEAVRWRERM--RLMRPLG-DVVVVLPCSMKKPYSTSRSHRKFTGVTRG 65

Query: 310 ALGEKLHRVHELIVTSPYGVVPREWEW---LAKYDIVVTGHWSDEEVKFAGELLASTLDK 366
                     ELI+TSP+G+ PRE E    ++ YD+   G WS EE K  G++L   +  
Sbjct: 66  --------FQELILTSPFGICPRELENTYPISSYDVSTIGEWSHEEKKLVGDVLREYVG- 116

Query: 367 YPDVPIIAHVEGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKKLEATLREFDVRDVD 426
             D+ +IAHV+GGY E     ++        T++    TS ++L++L+  L  ++     
Sbjct: 117 --DLDVIAHVDGGYLEVCMEYLD----SFTATSMEARPTSPEALERLKRELESYE----- 165

Query: 427 KEYRRYRFYENIRKVFDYYFGLGAGNEVLPDGAQVIGSKMLRLIFKN--SQTGTFQ--EG 482
           +   R R    +R V  Y FG G G  ++P+  +V G +  R I K+  +Q GTF    G
Sbjct: 166 RIPPRERLLHMLRSVAVYQFGPG-GERIIPEDCRVTG-RYHRKILKSDGTQIGTFMMDRG 223

Query: 483 VISVTPFGMQRIYDGLNAYWVEIDFEIRGD-IFAAGVERADSRIRPNDIVGVVKDGKVVG 541
           +IS++P G + +Y  L   WVEIDF +  + +FA GV  AD+ I P D V +V+ G+V G
Sbjct: 224 LISLSPEGGRSLYM-LGVKWVEIDFNLESNTLFAPGVSDADTGIIPGDEVVIVQGGEVAG 282

Query: 542 VGRAVLSGEEMVKAKKGIAVRVRKR 566
           VGRAVLSG+EMV+A++G+AVRVR+R
Sbjct: 283 VGRAVLSGDEMVRAERGVAVRVRRR 307


>sp|Q58428|YA22_METJA HYPOTHETICAL PROTEIN MJ1022 >gi|2128635|pir||E64427 hypothetical
           protein MJ1022 - Methanococcus jannaschii
           >gi|1499864|gb|AAB99026.1| (U67545) alignment in
           /usr/local/projects/ARG/Intergenic/ARG_R428_orf1.nr
           [Methanococcus jannaschii]
           Length = 569
           
 Score =  184 bits (463), Expect = 2e-45
 Identities = 160/506 (31%), Positives = 269/506 (52%), Gaps = 53/506 (10%)

Query: 81  KFNAFYFPALKREKYYDMLIKIIEDNDFEAIYIGNSKVMIKDYRGFVSTVRILREKF-PN 139
           K N F +  L   K+ D++   +ED D   I  G   +  K+    +  +  +REK  PN
Sbjct: 91  KGNVFKYQILNFGKHVDLIE--LEDADLYIIADGRRLIERKE----LQIIPKIREKISPN 144

Query: 140 -AILITDLEPFFYPLAVYLGIDAFDVRSLKIYFYEGLGFTQFSPIIWDR------PRDPI 192
            AI    + P+  PL  Y+G+D FD    K+Y   G  FT+   +  D         +  
Sbjct: 145 SAIYSPAVFPWEIPLLAYIGVDYFDDSLAKLYASMGYKFTKNRAVKVDSFSFEELYNNNK 204

Query: 193 EFAKEMIKLVKIAIEEGKLRYLVENFLPTAMNAGILRIADREHWDYLEKYTPVHDKTVVF 252
           +  +E+++ V+IAI+ G LR +VE    TA++   L    R +   L       +  ++ 
Sbjct: 205 KVYEEILEEVRIAIKNGFLRNVVEE---TAVSHPYLWANYRRYEPDLRNIPLSKENKIIV 261

Query: 253 ISDHSMTRPEVIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSHMLFRKAMKDALG 312
            ++ ++  PEV ++ +R+ + +EP + I +LL  PCS+KKPYS S+SH  F KA+K A  
Sbjct: 262 TTNINI--PEVKKYLERL-DNYEPYSNIIVLL--PCSSKKPYSISQSHQKFIKAIKSAKV 316

Query: 313 EKLHRVHELIVTSPYGVVPREWEWLAKYDIVVTGHWSDEEVKFAGELLASTL----DKYP 368
                V E+I+TSPYG+VPR  E L  YDI VTG WS EE++     L + L    +K+ 
Sbjct: 317 V----VEEVILTSPYGLVPRALERLVNYDIPVTGEWSFEEIELINNCLKNFLKKVKEKFD 372

Query: 369 DVPIIAHVEGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKKLEATLREF----DVRD 424
           D  +IAH+   Y E     +EL   +++ T+ G + TS+++LK L  TL+++      +D
Sbjct: 373 DYIVIAHLPEHYLE----ILELD--DIVITSKG-NPTSEEALKNLTDTLKKYKELTKSKD 425

Query: 425 VDKEYRRYRFYENIRKVFDYYFGLG-AGNEVLPDGAQVIGSKMLRLIFKNSQTGTF--QE 481
           ++K+ +R     NI+++ ++ FG+    NE+  +    I +K+     KN Q  +   + 
Sbjct: 426 INKKGQR---IHNIQQLAEFQFGINFIPNEIFINHKGQIFTKINN---KNQQIASINPKN 479

Query: 482 GVISVTPFGMQRIYD--GLNAYWVEIDFEI-RGDIFAAGVERADSRIRPNDIVGVVKDGK 538
           G++ +T  G + +++  G +  ++E+++EI +G +F  G    +  I  ND V ++KD  
Sbjct: 480 GLLILTLSGGELLWNSGGKDINYIEVNYEIKKGSLFPPGFVDCNENISYNDEVVLIKDDT 539

Query: 539 VVGVGRAVLSGEEMVKAKKGIAVRVR 564
            +G+GRA++SG EM KAK G  V +R
Sbjct: 540 FLGIGRALMSGFEMKKAKHGALVNIR 565


>gi|11498195 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483029|pir||C69323 conserved hypothetical protein
           AF0587 - Archaeoglobus fulgidus
           >gi|2650036|gb|AAB90653.1| (AE001064) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 528
           
 Score =  159 bits (397), Expect = 1e-37
 Identities = 115/329 (34%), Positives = 177/329 (52%), Gaps = 49/329 (14%)

Query: 252 FISDHSMTRPEVIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSHMLFRKAMKDAL 311
           F +  S +R EV  + +R  E ++P +  D +L+ PC+A+KPY  SR+H   R  +K   
Sbjct: 232 FSALESSSRFEVRYFFERALECYKPFS--DTVLLLPCTARKPYLTSRTHRALRSKVKV-- 287

Query: 312 GEKLHRVHELIVTSPYGVVPREWEWL---AKYDIVVTGHWSDEEVKFAGELLASTLDKYP 368
                 V+E+I++SP  VVPRE+E L     YD  VTGHWS+EEV F    L   ++K  
Sbjct: 288 -----NVNEIIISSPL-VVPREFELLYPAVNYDTPVTGHWSEEEVSFVAGWLKRFIEKGG 341

Query: 369 DVPIIAHVEGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKKLEATLREFDVRDVDKE 428
              ++AHV GGY++ V    +    EV++TA  D   S +S+++L+   +E + +     
Sbjct: 342 FRKVVAHVTGGYRKVVERVEDEVEAEVVYTAEKD-VLSDESIERLK---QEIESKGKVDL 397

Query: 429 YRRYRFYENIRKVFDYYFGLGAGNEV---LPDGAQVIGSKMLRLIFKNSQTGTFQEGVIS 485
           YRR      +  +  Y FG+    +V    P+   + G K L  + +             
Sbjct: 398 YRRI-----LEHMLSYQFGITWSGKVAGRYPELELLEGKKRLARVDR------------- 439

Query: 486 VTPFGMQRIYDGL-------NAYWVEI-DFEIRGDIFAAGVERADSRIRPNDIVGVVKDG 537
              +GM  IY+ +       N Y VEI DFE++G IFA GV RAD +IRPND+V V  + 
Sbjct: 440 --IYGMLDIYEKIAAYLLEKNIYTVEIGDFEVKGTIFAGGVLRADEKIRPNDVV-VFHNS 496

Query: 538 KVVGVGRAVLSGEEMVKAKKGIAVRVRKR 566
           ++ GVG A +SG+EM  ++KGIA+ V+++
Sbjct: 497 RIFGVGLAAMSGKEMAGSEKGIAINVKRK 525


>emb|CAC12053.1| (AL445065) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 510
           
 Score =  155 bits (389), Expect = 9e-37
 Identities = 147/500 (29%), Positives = 233/500 (46%), Gaps = 59/500 (11%)

Query: 90  LKREKYYDMLIK--IIEDNDFEAIYIGNSKVMIKDYRGFVSTVRILREK--FPNAILITD 145
           + R+  Y   IK  I+E +  + + I N   +++  +  V  +  +  +  F   I+I+ 
Sbjct: 45  IPRQILYPAKIKQEILETD--KLVIIPNGAELVRKPKDLVRIIMDIHSRYGFSKLIMISG 102

Query: 146 L-EPFFYPLAVYLGIDAFDVRSLKIYFYEGLGFTQFS--PIIWDRPRDPIEFAKEMIKLV 202
           + +P+  P  VYLGI  FD   L++    G  FT F       D   +   F  +M+ ++
Sbjct: 103 ISDPYSIPALVYLGISFFDSSILEMEGKMGYRFTPFGIEKADHDVSSENAIFISDMMHII 162

Query: 203 KIAIEEGKLRYLVENFLPTAMNAGILRIADREHWDYLEKYTPVHDKTVVFISDHSMTRPE 262
           + +I +G LR L+E  + ++  A ++RIAD  ++   E   PV    +   +   + RP+
Sbjct: 163 QRSISDGTLRELIEKAVISSKAAEMVRIADYSYYQDFESVFPVRTPYIKANTIEDLYRPD 222

Query: 263 VIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSHMLFRKAMKDALGEKLHRVHELI 322
           +IR++  + E +  P   D+ LI PCSAKKPYSRS+SH    + +  ALG     +HE+I
Sbjct: 223 LIRYRNYISESYVKPDA-DIALILPCSAKKPYSRSKSH----QKVIGALGNLRRFIHEVI 277

Query: 323 VTSPYGVVPREWE--WLAK-YDIVVTGHWSDEEVKFAGELLASTLDKYPDVPIIAHVEGG 379
           VTSP G+VPR+ E  + A+ YDI V G W ++E      +++S + +     +IA +   
Sbjct: 278 VTSPIGIVPRDLEETYPARFYDIPVIGLWYEDEKIMMKRMMSSYMGRNRYRKVIAFIPED 337

Query: 380 YK---EAVRYAMELTN---------REVIFTAVGDSTTSKDSLKKLEATLREFDVRDVDK 427
                EA+ Y  E+           REVI   +         + K  + LR         
Sbjct: 338 LDFITEAIPYPHEVIEFKSSNLQRLREVIQREIAGGKAVNQKVAKYNSILR--------- 388

Query: 428 EYRRYRFYENIRKVFDYYFGLGAGNE--VLPDGAQVIGSKMLRLIFKNSQTGTFQEGVIS 485
               Y+F E I  +   Y      N+  ++ DG          L   N   G F     S
Sbjct: 389 ----YQFGEWILPLVSGYTIRRNYNQDMIVKDGKI--------LFVYNENLGKFTINKAS 436

Query: 486 VTPFGMQRIYDGLNAYWVEID-FEIRGDIFAAGVERADSRIRPNDIVGVVKDGKVVGVGR 544
              F    I +G   + VEID F+   +++A GV  A   IR  D V +V  G+V GVG 
Sbjct: 437 ADMF----IKNG--KFLVEIDDFKPTSNVYAMGVVDATEDIRQEDEVVLVHSGEVRGVGI 490

Query: 545 AVLSGEEMVKAKKGIAVRVR 564
           A +    M++ KKGIAV+VR
Sbjct: 491 AKMPARAMIELKKGIAVKVR 510


>gb|AAG20138.1| (AE005092) archaeosine tRNA-ribosyltransferase; TgtA2
           [Halobacterium sp. NRC-1]
           Length = 585
           
 Score =  135 bits (337), Expect = 1e-30
 Identities = 127/377 (33%), Positives = 182/377 (47%), Gaps = 31/377 (8%)

Query: 202 VKIAIEEGKLRYLVENFLP-TAMNAGILRIADREHWDYLEKYTPV-HDKTVVFISDHSMT 259
           V+  I +G+LR  VE     TA     +R  D+++  Y+E+ TP   D  ++  +  ++ 
Sbjct: 221 VRRRIRDGRLRDYVEGQARHTAWLTAAMRELDQQY-GYVEQRTPTFRDSLLLSSTQDALH 279

Query: 260 RPEVIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSHMLFRKAMKDALGEKLHRVH 319
           R E+ R+  RV  R+        LL+ PCSA+KPYS S+SH  F+ A         +R H
Sbjct: 280 RVEIQRFADRVTSRYRKRLDGHPLLLVPCSARKPYSDSQSHRQFQDAAS-------YRAH 332

Query: 320 ELIVTSPYGVVPREWEW---LAKYDIVVTGHWSDEEVKFAGELLASTLDKYPDVPIIAHV 376
              +TSP GVVP+E E       YD VVTG WS EE  F   +L   L++     +IAHV
Sbjct: 333 VASITSPIGVVPQELELTYPAQHYDSVVTGRWSAEEKDFVARVLRRYLERTDYSRVIAHV 392

Query: 377 -EGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKKLEATLREFDVRDVDKEYRRYRFY 435
              GY++         +    FT V D  T+ +SL +L A L        DK + + R  
Sbjct: 393 PPEGYRDICERVAGDVDVPFEFT-VADHPTTDESLGELNAAL-----AGEDKIWVQEREA 446

Query: 436 ENIRKVFDYYFGLGAGNEVLPDGAQVIGSKMLRLIFKNSQTG------TFQEGVISVTPF 489
             ++ V DYY G GAG+ V  D  +V G +  +L   ++ TG        + G +S T  
Sbjct: 447 ATLKAVADYYLGDGAGDAVFAD-IEVQG-RYPKLQALDADTGDQLAALVPEYGSLSFTLA 504

Query: 490 G-MQRIYDGLNAYWVEID-FEIRGDIFAAGVERADSRIRPNDIVGVVKDGKVVGVGRAVL 547
           G  Q +        VEID F  +G + A GV  A   IR  D V V++      VGRA +
Sbjct: 505 GARQWVASDAPTKRVEIDGFVPQGSVLAPGVIDASDDIRVGDEV-VIEGPAAFAVGRARM 563

Query: 548 SGEEMVKAKKGIAVRVR 564
            G  M  A +G+AV+VR
Sbjct: 564 PGPAMADATRGMAVQVR 580


>gb|AAF97200.1|AF268611_25 (AF268611) queuine tRNA-ribosyltransferase [uncultured marine group
           II euryarchaeote 37F11]
           Length = 589
           
 Score = 92.4 bits (226), Expect = 1e-17
 Identities = 80/301 (26%), Positives = 140/301 (45%), Gaps = 28/301 (9%)

Query: 127 VSTVRILREKFPNAILITDL--EPFFYPLAVYLGIDAFDVRSLKIYFYEGLGFTQFSPII 184
           V  + +++ +FP ++L T     P    +  + G+D FD          G   T F P  
Sbjct: 148 VQAISVIKNRFPGSLLWTPGLGGPDNAAVLAWFGVDIFDFSRSGFAVASGHLLTAFGPRA 207

Query: 185 W-----DRPRDPIEFAKEMIKLVKIAIEEGKLRYLVEN-FLPTAMNAGILRIADR--EHW 236
                   P   ++   + ++ V+ AI  G LR L E   L +      +R  D+  +  
Sbjct: 208 PLDGEDCSPAVAVDHYDQSLRSVRSAISSGTLRTLAEQQSLNSPKLVEHMRFFDKMMKSS 267

Query: 237 DYLEKYTPVHDKTVVFISDHSMTRPEVIRWKKRVKERFEPPAGID-LLLIFPCSAKKPYS 295
           D + +  P+    + ++S  S     V +W   +   ++ P  +D +L++ PCSA+KPY 
Sbjct: 268 DNIMRIHPLGVNRIDYLSTTSHQDSSVEQWVDFISNTYQVPEKLDNVLVLLPCSARKPYR 327

Query: 296 RSRSHMLFRKAMKDALGEKLHRVHELIVTSPYGVVPREWE--W-LAKYDIVVTGHWSDEE 352
            S+SH  F +A+        +  HE++VTSP G+VPR+ E  W  A YDI VTG WS +E
Sbjct: 328 LSKSHRKFIQAL------GTNACHEVMVTSPLGLVPRDLEDVWPAAFYDIPVTGDWSRDE 381

Query: 353 VKFAGELLASTLDKYPDVPIIAHVEGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKK 412
           +     ++ + ++++    II H            +E+    +I T  G+S+ S+ +L +
Sbjct: 382 LHRIESMVRNLVERHDYDRIINH--------SGMVIEIEGFNIIDTRQGESSGSRTALHR 433

Query: 413 L 413
           L
Sbjct: 434 L 434


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.142    0.419 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 221150433
Number of Sequences: 2977
Number of extensions: 10014223
Number of successful extensions: 22551
Number of sequences better than 1.0e-10: 8
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 22525
Number of HSP's gapped (non-prelim): 9
length of query: 570
length of database: 189,106,746
effective HSP length: 55
effective length of query: 515
effective length of database: 156,189,961
effective search space: 80437829915
effective search space used: 80437829915
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 167 (69.5 bits)