BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0082 (PAB0082) DE:Hypothetical protein
(570 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75201 hypothetical protein PAB0082 - Pyrococcus abyssi (st... 1159 0.0
pir||E71234 hypothetical protein PH0135 - Pyrococcus horikoshii ... 1019 0.0
pir||E69089 conserved hypothetical protein MTH1665 - Methanobact... 192 9e-48
sp|Q58428|YA22_METJA HYPOTHETICAL PROTEIN MJ1022 >gi|2128635|pir... 184 2e-45
gi|11498195 conserved hypothetical protein [Archaeoglobus fulgid... 159 1e-37
emb|CAC12053.1| (AL445065) conserved hypothetical protein [Therm... 155 9e-37
gb|AAG20138.1| (AE005092) archaeosine tRNA-ribosyltransferase; T... 135 1e-30
gb|AAF97200.1|AF268611_25 (AF268611) queuine tRNA-ribosyltransfe... 92 1e-17
>pir||A75201 hypothetical protein PAB0082 - Pyrococcus abyssi (strain Orsay)
>gi|5457565|emb|CAB49056.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 570
Score = 1159 bits (2965), Expect = 0.0
Identities = 570/570 (100%), Positives = 570/570 (100%)
Query: 1 MEVVKHDGPGRLGVIRLEPPVQTPALAGVDFTLSPFNSYFHPKEFSEYDFNLAPAIPLSY 60
MEVVKHDGPGRLGVIRLEPPVQTPALAGVDFTLSPFNSYFHPKEFSEYDFNLAPAIPLSY
Sbjct: 1 MEVVKHDGPGRLGVIRLEPPVQTPALAGVDFTLSPFNSYFHPKEFSEYDFNLAPAIPLSY 60
Query: 61 YTPDEVIEKALRRIESQDYSKFNAFYFPALKREKYYDMLIKIIEDNDFEAIYIGNSKVMI 120
YTPDEVIEKALRRIESQDYSKFNAFYFPALKREKYYDMLIKIIEDNDFEAIYIGNSKVMI
Sbjct: 61 YTPDEVIEKALRRIESQDYSKFNAFYFPALKREKYYDMLIKIIEDNDFEAIYIGNSKVMI 120
Query: 121 KDYRGFVSTVRILREKFPNAILITDLEPFFYPLAVYLGIDAFDVRSLKIYFYEGLGFTQF 180
KDYRGFVSTVRILREKFPNAILITDLEPFFYPLAVYLGIDAFDVRSLKIYFYEGLGFTQF
Sbjct: 121 KDYRGFVSTVRILREKFPNAILITDLEPFFYPLAVYLGIDAFDVRSLKIYFYEGLGFTQF 180
Query: 181 SPIIWDRPRDPIEFAKEMIKLVKIAIEEGKLRYLVENFLPTAMNAGILRIADREHWDYLE 240
SPIIWDRPRDPIEFAKEMIKLVKIAIEEGKLRYLVENFLPTAMNAGILRIADREHWDYLE
Sbjct: 181 SPIIWDRPRDPIEFAKEMIKLVKIAIEEGKLRYLVENFLPTAMNAGILRIADREHWDYLE 240
Query: 241 KYTPVHDKTVVFISDHSMTRPEVIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSH 300
KYTPVHDKTVVFISDHSMTRPEVIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSH
Sbjct: 241 KYTPVHDKTVVFISDHSMTRPEVIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSH 300
Query: 301 MLFRKAMKDALGEKLHRVHELIVTSPYGVVPREWEWLAKYDIVVTGHWSDEEVKFAGELL 360
MLFRKAMKDALGEKLHRVHELIVTSPYGVVPREWEWLAKYDIVVTGHWSDEEVKFAGELL
Sbjct: 301 MLFRKAMKDALGEKLHRVHELIVTSPYGVVPREWEWLAKYDIVVTGHWSDEEVKFAGELL 360
Query: 361 ASTLDKYPDVPIIAHVEGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKKLEATLREF 420
ASTLDKYPDVPIIAHVEGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKKLEATLREF
Sbjct: 361 ASTLDKYPDVPIIAHVEGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKKLEATLREF 420
Query: 421 DVRDVDKEYRRYRFYENIRKVFDYYFGLGAGNEVLPDGAQVIGSKMLRLIFKNSQTGTFQ 480
DVRDVDKEYRRYRFYENIRKVFDYYFGLGAGNEVLPDGAQVIGSKMLRLIFKNSQTGTFQ
Sbjct: 421 DVRDVDKEYRRYRFYENIRKVFDYYFGLGAGNEVLPDGAQVIGSKMLRLIFKNSQTGTFQ 480
Query: 481 EGVISVTPFGMQRIYDGLNAYWVEIDFEIRGDIFAAGVERADSRIRPNDIVGVVKDGKVV 540
EGVISVTPFGMQRIYDGLNAYWVEIDFEIRGDIFAAGVERADSRIRPNDIVGVVKDGKVV
Sbjct: 481 EGVISVTPFGMQRIYDGLNAYWVEIDFEIRGDIFAAGVERADSRIRPNDIVGVVKDGKVV 540
Query: 541 GVGRAVLSGEEMVKAKKGIAVRVRKRAKSL 570
GVGRAVLSGEEMVKAKKGIAVRVRKRAKSL
Sbjct: 541 GVGRAVLSGEEMVKAKKGIAVRVRKRAKSL 570
>pir||E71234 hypothetical protein PH0135 - Pyrococcus horikoshii
>gi|3256521|dbj|BAA29204.1| (AP000001) 570aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 570
Score = 1019 bits (2606), Expect = 0.0
Identities = 473/569 (83%), Positives = 536/569 (94%)
Query: 1 MEVVKHDGPGRLGVIRLEPPVQTPALAGVDFTLSPFNSYFHPKEFSEYDFNLAPAIPLSY 60
MEV+KHDGPGRLGVIRLEPPVQTPALAGVDFT+SPFNSYF+PKE+ +YDFNLAP+IPLSY
Sbjct: 1 MEVIKHDGPGRLGVIRLEPPVQTPALAGVDFTISPFNSYFNPKEYHDYDFNLAPSIPLSY 60
Query: 61 YTPDEVIEKALRRIESQDYSKFNAFYFPALKREKYYDMLIKIIEDNDFEAIYIGNSKVMI 120
YTPDEVIEKAL+RIE+ DYSKFN FYFPALKR+KYY +++IE+NDF+AIYIGNSKVMI
Sbjct: 61 YTPDEVIEKALKRIETVDYSKFNTFYFPALKRDKYYPRFVELIEENDFDAIYIGNSKVMI 120
Query: 121 KDYRGFVSTVRILREKFPNAILITDLEPFFYPLAVYLGIDAFDVRSLKIYFYEGLGFTQF 180
KDYRGFV+T+RILREKFPNA+LITDLEPFFYPLAVYLG+DAFDVRSLKIY YEGLGFT F
Sbjct: 121 KDYRGFVATLRILREKFPNAVLITDLEPFFYPLAVYLGVDAFDVRSLKIYSYEGLGFTPF 180
Query: 181 SPIIWDRPRDPIEFAKEMIKLVKIAIEEGKLRYLVENFLPTAMNAGILRIADREHWDYLE 240
SP+IWDRP DPIEFA+EMIK++KIAI+EGKLRYLVENFLPT MN GILRIAD+EH DYLE
Sbjct: 181 SPVIWDRPNDPIEFAREMIKIIKIAIQEGKLRYLVENFLPTVMNVGILRIADKEHGDYLE 240
Query: 241 KYTPVHDKTVVFISDHSMTRPEVIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSH 300
KYTPVHDKTVVFIS+HS++RPEV RW+KR++ERFEPP GIDLLLIFPCSAKKPYSRSRSH
Sbjct: 241 KYTPVHDKTVVFISEHSISRPEVFRWRKRIEERFEPPKGIDLLLIFPCSAKKPYSRSRSH 300
Query: 301 MLFRKAMKDALGEKLHRVHELIVTSPYGVVPREWEWLAKYDIVVTGHWSDEEVKFAGELL 360
M++RK MK+ALGEK+HRVHEL+VTSPYGVVPREWEWLAKYDIVVTGHWS+ EV+FAGELL
Sbjct: 301 MMYRKVMKEALGEKVHRVHELVVTSPYGVVPREWEWLAKYDIVVTGHWSESEVRFAGELL 360
Query: 361 ASTLDKYPDVPIIAHVEGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKKLEATLREF 420
A T++KYPD+PI+AHVEGGY+EAV+YAMEL NR+VIFTAVG ST SK+SL KL+ TL+EF
Sbjct: 361 AQTIEKYPDIPIVAHVEGGYREAVKYAMELVNRDVIFTAVGSSTISKESLDKLKKTLKEF 420
Query: 421 DVRDVDKEYRRYRFYENIRKVFDYYFGLGAGNEVLPDGAQVIGSKMLRLIFKNSQTGTFQ 480
D+RD +K+YRRYRFYEN+RKVFDYYFGLGAG VLP+ AQ++GSKMLRLI NSQTGTFQ
Sbjct: 421 DLRDAEKDYRRYRFYENVRKVFDYYFGLGAGEAVLPENAQIVGSKMLRLIVNNSQTGTFQ 480
Query: 481 EGVISVTPFGMQRIYDGLNAYWVEIDFEIRGDIFAAGVERADSRIRPNDIVGVVKDGKVV 540
EGVISVTPFGMQRIYD LN+YWVE+DF+IRGD+FAAGVERAD IRPNDIVG+V+DG+VV
Sbjct: 481 EGVISVTPFGMQRIYDKLNSYWVEVDFDIRGDVFAAGVERADEGIRPNDIVGIVRDGRVV 540
Query: 541 GVGRAVLSGEEMVKAKKGIAVRVRKRAKS 569
VGRAVLSGEEMV+AKKGIAVRVRKR K+
Sbjct: 541 AVGRAVLSGEEMVRAKKGIAVRVRKRVKN 569
>pir||E69089 conserved hypothetical protein MTH1665 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622794|gb|AAB86137.1| (AE000925) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 309
Score = 192 bits (483), Expect = 9e-48
Identities = 126/325 (38%), Positives = 188/325 (57%), Gaps = 34/325 (10%)
Query: 250 VVFISDHSMTRPEVIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSHMLFRKAMKD 309
V+ + S+ RPE +RW++R+ R P G D++++ PCS KKPYS SRSH F +
Sbjct: 9 VICSIEESLHRPEAVRWRERM--RLMRPLG-DVVVVLPCSMKKPYSTSRSHRKFTGVTRG 65
Query: 310 ALGEKLHRVHELIVTSPYGVVPREWEW---LAKYDIVVTGHWSDEEVKFAGELLASTLDK 366
ELI+TSP+G+ PRE E ++ YD+ G WS EE K G++L +
Sbjct: 66 --------FQELILTSPFGICPRELENTYPISSYDVSTIGEWSHEEKKLVGDVLREYVG- 116
Query: 367 YPDVPIIAHVEGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKKLEATLREFDVRDVD 426
D+ +IAHV+GGY E ++ T++ TS ++L++L+ L ++
Sbjct: 117 --DLDVIAHVDGGYLEVCMEYLD----SFTATSMEARPTSPEALERLKRELESYE----- 165
Query: 427 KEYRRYRFYENIRKVFDYYFGLGAGNEVLPDGAQVIGSKMLRLIFKN--SQTGTFQ--EG 482
+ R R +R V Y FG G G ++P+ +V G + R I K+ +Q GTF G
Sbjct: 166 RIPPRERLLHMLRSVAVYQFGPG-GERIIPEDCRVTG-RYHRKILKSDGTQIGTFMMDRG 223
Query: 483 VISVTPFGMQRIYDGLNAYWVEIDFEIRGD-IFAAGVERADSRIRPNDIVGVVKDGKVVG 541
+IS++P G + +Y L WVEIDF + + +FA GV AD+ I P D V +V+ G+V G
Sbjct: 224 LISLSPEGGRSLYM-LGVKWVEIDFNLESNTLFAPGVSDADTGIIPGDEVVIVQGGEVAG 282
Query: 542 VGRAVLSGEEMVKAKKGIAVRVRKR 566
VGRAVLSG+EMV+A++G+AVRVR+R
Sbjct: 283 VGRAVLSGDEMVRAERGVAVRVRRR 307
>sp|Q58428|YA22_METJA HYPOTHETICAL PROTEIN MJ1022 >gi|2128635|pir||E64427 hypothetical
protein MJ1022 - Methanococcus jannaschii
>gi|1499864|gb|AAB99026.1| (U67545) alignment in
/usr/local/projects/ARG/Intergenic/ARG_R428_orf1.nr
[Methanococcus jannaschii]
Length = 569
Score = 184 bits (463), Expect = 2e-45
Identities = 160/506 (31%), Positives = 269/506 (52%), Gaps = 53/506 (10%)
Query: 81 KFNAFYFPALKREKYYDMLIKIIEDNDFEAIYIGNSKVMIKDYRGFVSTVRILREKF-PN 139
K N F + L K+ D++ +ED D I G + K+ + + +REK PN
Sbjct: 91 KGNVFKYQILNFGKHVDLIE--LEDADLYIIADGRRLIERKE----LQIIPKIREKISPN 144
Query: 140 -AILITDLEPFFYPLAVYLGIDAFDVRSLKIYFYEGLGFTQFSPIIWDR------PRDPI 192
AI + P+ PL Y+G+D FD K+Y G FT+ + D +
Sbjct: 145 SAIYSPAVFPWEIPLLAYIGVDYFDDSLAKLYASMGYKFTKNRAVKVDSFSFEELYNNNK 204
Query: 193 EFAKEMIKLVKIAIEEGKLRYLVENFLPTAMNAGILRIADREHWDYLEKYTPVHDKTVVF 252
+ +E+++ V+IAI+ G LR +VE TA++ L R + L + ++
Sbjct: 205 KVYEEILEEVRIAIKNGFLRNVVEE---TAVSHPYLWANYRRYEPDLRNIPLSKENKIIV 261
Query: 253 ISDHSMTRPEVIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSHMLFRKAMKDALG 312
++ ++ PEV ++ +R+ + +EP + I +LL PCS+KKPYS S+SH F KA+K A
Sbjct: 262 TTNINI--PEVKKYLERL-DNYEPYSNIIVLL--PCSSKKPYSISQSHQKFIKAIKSAKV 316
Query: 313 EKLHRVHELIVTSPYGVVPREWEWLAKYDIVVTGHWSDEEVKFAGELLASTL----DKYP 368
V E+I+TSPYG+VPR E L YDI VTG WS EE++ L + L +K+
Sbjct: 317 V----VEEVILTSPYGLVPRALERLVNYDIPVTGEWSFEEIELINNCLKNFLKKVKEKFD 372
Query: 369 DVPIIAHVEGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKKLEATLREF----DVRD 424
D +IAH+ Y E +EL +++ T+ G + TS+++LK L TL+++ +D
Sbjct: 373 DYIVIAHLPEHYLE----ILELD--DIVITSKG-NPTSEEALKNLTDTLKKYKELTKSKD 425
Query: 425 VDKEYRRYRFYENIRKVFDYYFGLG-AGNEVLPDGAQVIGSKMLRLIFKNSQTGTF--QE 481
++K+ +R NI+++ ++ FG+ NE+ + I +K+ KN Q + +
Sbjct: 426 INKKGQR---IHNIQQLAEFQFGINFIPNEIFINHKGQIFTKINN---KNQQIASINPKN 479
Query: 482 GVISVTPFGMQRIYD--GLNAYWVEIDFEI-RGDIFAAGVERADSRIRPNDIVGVVKDGK 538
G++ +T G + +++ G + ++E+++EI +G +F G + I ND V ++KD
Sbjct: 480 GLLILTLSGGELLWNSGGKDINYIEVNYEIKKGSLFPPGFVDCNENISYNDEVVLIKDDT 539
Query: 539 VVGVGRAVLSGEEMVKAKKGIAVRVR 564
+G+GRA++SG EM KAK G V +R
Sbjct: 540 FLGIGRALMSGFEMKKAKHGALVNIR 565
>gi|11498195 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483029|pir||C69323 conserved hypothetical protein
AF0587 - Archaeoglobus fulgidus
>gi|2650036|gb|AAB90653.1| (AE001064) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 528
Score = 159 bits (397), Expect = 1e-37
Identities = 115/329 (34%), Positives = 177/329 (52%), Gaps = 49/329 (14%)
Query: 252 FISDHSMTRPEVIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSHMLFRKAMKDAL 311
F + S +R EV + +R E ++P + D +L+ PC+A+KPY SR+H R +K
Sbjct: 232 FSALESSSRFEVRYFFERALECYKPFS--DTVLLLPCTARKPYLTSRTHRALRSKVKV-- 287
Query: 312 GEKLHRVHELIVTSPYGVVPREWEWL---AKYDIVVTGHWSDEEVKFAGELLASTLDKYP 368
V+E+I++SP VVPRE+E L YD VTGHWS+EEV F L ++K
Sbjct: 288 -----NVNEIIISSPL-VVPREFELLYPAVNYDTPVTGHWSEEEVSFVAGWLKRFIEKGG 341
Query: 369 DVPIIAHVEGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKKLEATLREFDVRDVDKE 428
++AHV GGY++ V + EV++TA D S +S+++L+ +E + +
Sbjct: 342 FRKVVAHVTGGYRKVVERVEDEVEAEVVYTAEKD-VLSDESIERLK---QEIESKGKVDL 397
Query: 429 YRRYRFYENIRKVFDYYFGLGAGNEV---LPDGAQVIGSKMLRLIFKNSQTGTFQEGVIS 485
YRR + + Y FG+ +V P+ + G K L + +
Sbjct: 398 YRRI-----LEHMLSYQFGITWSGKVAGRYPELELLEGKKRLARVDR------------- 439
Query: 486 VTPFGMQRIYDGL-------NAYWVEI-DFEIRGDIFAAGVERADSRIRPNDIVGVVKDG 537
+GM IY+ + N Y VEI DFE++G IFA GV RAD +IRPND+V V +
Sbjct: 440 --IYGMLDIYEKIAAYLLEKNIYTVEIGDFEVKGTIFAGGVLRADEKIRPNDVV-VFHNS 496
Query: 538 KVVGVGRAVLSGEEMVKAKKGIAVRVRKR 566
++ GVG A +SG+EM ++KGIA+ V+++
Sbjct: 497 RIFGVGLAAMSGKEMAGSEKGIAINVKRK 525
>emb|CAC12053.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 510
Score = 155 bits (389), Expect = 9e-37
Identities = 147/500 (29%), Positives = 233/500 (46%), Gaps = 59/500 (11%)
Query: 90 LKREKYYDMLIK--IIEDNDFEAIYIGNSKVMIKDYRGFVSTVRILREK--FPNAILITD 145
+ R+ Y IK I+E + + + I N +++ + V + + + F I+I+
Sbjct: 45 IPRQILYPAKIKQEILETD--KLVIIPNGAELVRKPKDLVRIIMDIHSRYGFSKLIMISG 102
Query: 146 L-EPFFYPLAVYLGIDAFDVRSLKIYFYEGLGFTQFS--PIIWDRPRDPIEFAKEMIKLV 202
+ +P+ P VYLGI FD L++ G FT F D + F +M+ ++
Sbjct: 103 ISDPYSIPALVYLGISFFDSSILEMEGKMGYRFTPFGIEKADHDVSSENAIFISDMMHII 162
Query: 203 KIAIEEGKLRYLVENFLPTAMNAGILRIADREHWDYLEKYTPVHDKTVVFISDHSMTRPE 262
+ +I +G LR L+E + ++ A ++RIAD ++ E PV + + + RP+
Sbjct: 163 QRSISDGTLRELIEKAVISSKAAEMVRIADYSYYQDFESVFPVRTPYIKANTIEDLYRPD 222
Query: 263 VIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSHMLFRKAMKDALGEKLHRVHELI 322
+IR++ + E + P D+ LI PCSAKKPYSRS+SH + + ALG +HE+I
Sbjct: 223 LIRYRNYISESYVKPDA-DIALILPCSAKKPYSRSKSH----QKVIGALGNLRRFIHEVI 277
Query: 323 VTSPYGVVPREWE--WLAK-YDIVVTGHWSDEEVKFAGELLASTLDKYPDVPIIAHVEGG 379
VTSP G+VPR+ E + A+ YDI V G W ++E +++S + + +IA +
Sbjct: 278 VTSPIGIVPRDLEETYPARFYDIPVIGLWYEDEKIMMKRMMSSYMGRNRYRKVIAFIPED 337
Query: 380 YK---EAVRYAMELTN---------REVIFTAVGDSTTSKDSLKKLEATLREFDVRDVDK 427
EA+ Y E+ REVI + + K + LR
Sbjct: 338 LDFITEAIPYPHEVIEFKSSNLQRLREVIQREIAGGKAVNQKVAKYNSILR--------- 388
Query: 428 EYRRYRFYENIRKVFDYYFGLGAGNE--VLPDGAQVIGSKMLRLIFKNSQTGTFQEGVIS 485
Y+F E I + Y N+ ++ DG L N G F S
Sbjct: 389 ----YQFGEWILPLVSGYTIRRNYNQDMIVKDGKI--------LFVYNENLGKFTINKAS 436
Query: 486 VTPFGMQRIYDGLNAYWVEID-FEIRGDIFAAGVERADSRIRPNDIVGVVKDGKVVGVGR 544
F I +G + VEID F+ +++A GV A IR D V +V G+V GVG
Sbjct: 437 ADMF----IKNG--KFLVEIDDFKPTSNVYAMGVVDATEDIRQEDEVVLVHSGEVRGVGI 490
Query: 545 AVLSGEEMVKAKKGIAVRVR 564
A + M++ KKGIAV+VR
Sbjct: 491 AKMPARAMIELKKGIAVKVR 510
>gb|AAG20138.1| (AE005092) archaeosine tRNA-ribosyltransferase; TgtA2
[Halobacterium sp. NRC-1]
Length = 585
Score = 135 bits (337), Expect = 1e-30
Identities = 127/377 (33%), Positives = 182/377 (47%), Gaps = 31/377 (8%)
Query: 202 VKIAIEEGKLRYLVENFLP-TAMNAGILRIADREHWDYLEKYTPV-HDKTVVFISDHSMT 259
V+ I +G+LR VE TA +R D+++ Y+E+ TP D ++ + ++
Sbjct: 221 VRRRIRDGRLRDYVEGQARHTAWLTAAMRELDQQY-GYVEQRTPTFRDSLLLSSTQDALH 279
Query: 260 RPEVIRWKKRVKERFEPPAGIDLLLIFPCSAKKPYSRSRSHMLFRKAMKDALGEKLHRVH 319
R E+ R+ RV R+ LL+ PCSA+KPYS S+SH F+ A +R H
Sbjct: 280 RVEIQRFADRVTSRYRKRLDGHPLLLVPCSARKPYSDSQSHRQFQDAAS-------YRAH 332
Query: 320 ELIVTSPYGVVPREWEW---LAKYDIVVTGHWSDEEVKFAGELLASTLDKYPDVPIIAHV 376
+TSP GVVP+E E YD VVTG WS EE F +L L++ +IAHV
Sbjct: 333 VASITSPIGVVPQELELTYPAQHYDSVVTGRWSAEEKDFVARVLRRYLERTDYSRVIAHV 392
Query: 377 -EGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKKLEATLREFDVRDVDKEYRRYRFY 435
GY++ + FT V D T+ +SL +L A L DK + + R
Sbjct: 393 PPEGYRDICERVAGDVDVPFEFT-VADHPTTDESLGELNAAL-----AGEDKIWVQEREA 446
Query: 436 ENIRKVFDYYFGLGAGNEVLPDGAQVIGSKMLRLIFKNSQTG------TFQEGVISVTPF 489
++ V DYY G GAG+ V D +V G + +L ++ TG + G +S T
Sbjct: 447 ATLKAVADYYLGDGAGDAVFAD-IEVQG-RYPKLQALDADTGDQLAALVPEYGSLSFTLA 504
Query: 490 G-MQRIYDGLNAYWVEID-FEIRGDIFAAGVERADSRIRPNDIVGVVKDGKVVGVGRAVL 547
G Q + VEID F +G + A GV A IR D V V++ VGRA +
Sbjct: 505 GARQWVASDAPTKRVEIDGFVPQGSVLAPGVIDASDDIRVGDEV-VIEGPAAFAVGRARM 563
Query: 548 SGEEMVKAKKGIAVRVR 564
G M A +G+AV+VR
Sbjct: 564 PGPAMADATRGMAVQVR 580
>gb|AAF97200.1|AF268611_25 (AF268611) queuine tRNA-ribosyltransferase [uncultured marine group
II euryarchaeote 37F11]
Length = 589
Score = 92.4 bits (226), Expect = 1e-17
Identities = 80/301 (26%), Positives = 140/301 (45%), Gaps = 28/301 (9%)
Query: 127 VSTVRILREKFPNAILITDL--EPFFYPLAVYLGIDAFDVRSLKIYFYEGLGFTQFSPII 184
V + +++ +FP ++L T P + + G+D FD G T F P
Sbjct: 148 VQAISVIKNRFPGSLLWTPGLGGPDNAAVLAWFGVDIFDFSRSGFAVASGHLLTAFGPRA 207
Query: 185 W-----DRPRDPIEFAKEMIKLVKIAIEEGKLRYLVEN-FLPTAMNAGILRIADR--EHW 236
P ++ + ++ V+ AI G LR L E L + +R D+ +
Sbjct: 208 PLDGEDCSPAVAVDHYDQSLRSVRSAISSGTLRTLAEQQSLNSPKLVEHMRFFDKMMKSS 267
Query: 237 DYLEKYTPVHDKTVVFISDHSMTRPEVIRWKKRVKERFEPPAGID-LLLIFPCSAKKPYS 295
D + + P+ + ++S S V +W + ++ P +D +L++ PCSA+KPY
Sbjct: 268 DNIMRIHPLGVNRIDYLSTTSHQDSSVEQWVDFISNTYQVPEKLDNVLVLLPCSARKPYR 327
Query: 296 RSRSHMLFRKAMKDALGEKLHRVHELIVTSPYGVVPREWE--W-LAKYDIVVTGHWSDEE 352
S+SH F +A+ + HE++VTSP G+VPR+ E W A YDI VTG WS +E
Sbjct: 328 LSKSHRKFIQAL------GTNACHEVMVTSPLGLVPRDLEDVWPAAFYDIPVTGDWSRDE 381
Query: 353 VKFAGELLASTLDKYPDVPIIAHVEGGYKEAVRYAMELTNREVIFTAVGDSTTSKDSLKK 412
+ ++ + ++++ II H +E+ +I T G+S+ S+ +L +
Sbjct: 382 LHRIESMVRNLVERHDYDRIINH--------SGMVIEIEGFNIIDTRQGESSGSRTALHR 433
Query: 413 L 413
L
Sbjct: 434 L 434
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.142 0.419
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 221150433
Number of Sequences: 2977
Number of extensions: 10014223
Number of successful extensions: 22551
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 22525
Number of HSP's gapped (non-prelim): 9
length of query: 570
length of database: 189,106,746
effective HSP length: 55
effective length of query: 515
effective length of database: 156,189,961
effective search space: 80437829915
effective search space used: 80437829915
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 167 (69.5 bits)